Rh2CG603800

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000534
Physical Location & Seq
Reverse (-)
77913967 .. 77914935
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG603800.1

Sequence Viewer

Length: 558 bp
ATGTTTTTGTCGTTTACTCTAGCGCACTTGAAAGAAGGTTCTCTTACTTTTTCACTCCTTGGTGGACAATTCCTTCTTGGCCTAATTGGGAGTTCAAGTTTGTTGTTAGCATATAATGGGATCAACTACAGCTTACCAACACTGGCTTCAGCTATAGGGAATCTTATACCAGTCTTTACATTCATGCTGGCAATTATTTTCAGGATGGAAAAGCTAGATTTGAGAAGATCAAGCGGTCGAGCCAAAGTGTTATGGACTATAGTATCAGTATCCGGAGCATTTATAGTAATTTTATACAAGGGATCAGTAATCTTTTCACCATCCAACTCTCCTCACAAAAACTTAACGATAACCTCACAGCAAACAAAGTGGATCTTAGGAGGTCTTATGCTTGCAGTAGCATGCCTTTTGGCAGCAATATGGAACATTCTTCAGAAATCACTTGTTGAGAACTGTCCATCAATGGTTACCATAGTCTTCTTCTACACCTTATTTATGACAATCCAATGCACAGTGCTCTCTTTGTTTGTGGAAAGGAATCGGAATGGTGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

185

Amino Acids

20.34

Weight (kDa)

9.76

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 1 cut(s) 234
AclWI GGATC 3 cut(s) 128, 310, 380
AcuI CTGAAG 2 cut(s) 132, 416
AgsI TTSAA 2 cut(s) 31, 96
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 132, 152, 214
AluI AGCT 3 cut(s) 132, 152, 214
Alw21I GWGCWC 1 cut(s) 519
AlwI GGATC 3 cut(s) 128, 310, 380
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 309
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 425
BccI CCATC 3 cut(s) 199, 328, 466
BciVI GTATCC 1 cut(s) 280
BfaI CTAG 2 cut(s) 20, 215
BfmI CTRYAG 3 cut(s) 127, 153, 258
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse1I ACTGG 2 cut(s) 147, 170
BseAI TCCGGA 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 210, 320
BseNI ACTGG 2 cut(s) 147, 170
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 1 cut(s) 273
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 519
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 4 cut(s) 120, 227, 302, 372
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 272
BspPI GGATC 3 cut(s) 128, 310, 380
BsrI ACTGG 2 cut(s) 147, 170
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 4 cut(s) 120, 227, 302, 372
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 455, 514
BstC8I GCNNGC 3 cut(s) 189, 393, 403
BstDEI CTNAG 1 cut(s) 376
BstEII GGTNACC 1 cut(s) 466
BstF5I GGATG 2 cut(s) 210, 320
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 4 cut(s) 123, 230, 305, 375
BstMBI GATC 4 cut(s) 120, 227, 302, 372
BstMCI CGRYCG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 405
BstPI GGTNACC 1 cut(s) 466
BstSFI CTRYAG 3 cut(s) 127, 153, 258
BstV1I GCAGC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 469
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 210, 320
BtsIMutI CAGTG 2 cut(s) 140, 519
Cac8I GCNNGC 3 cut(s) 189, 393, 403
CfoI GCGC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 350, 385
CviAII CATG 2 cut(s) 184, 402
CviJI RGCY 6 cut(s) 81, 132, 146, 152, 214, 242
CviKI_1 RGCY 6 cut(s) 81, 132, 146, 152, 214, 242
DdeI CTNAG 1 cut(s) 376
DpnI GATC 4 cut(s) 122, 229, 304, 374
DpnII GATC 4 cut(s) 120, 227, 302, 372
Eco130I CCWWGG 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 132, 416
Eco91I GGTNACC 1 cut(s) 466
EcoO65I GGTNACC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 187, 405
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 359, 391
FatI CATG 2 cut(s) 183, 401
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 2 cut(s) 217, 307
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 2 cut(s) 20, 215
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 187, 405
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 2 cut(s) 160, 538
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 2 cut(s) 15, 65
Hpy188I TCNGA 2 cut(s) 435, 543
Hpy188III TCNNGA 2 cut(s) 202, 273
Hpy8I GTNNAC 2 cut(s) 15, 65
HpyAV CCTTC 2 cut(s) 29, 83
HpyCH4III ACNGT 2 cut(s) 455, 514
HpyCH4V TGCA 2 cut(s) 395, 510
HpyF3I CTNAG 1 cut(s) 376
Hsp92II CATG 2 cut(s) 187, 405
HspAI GCGC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 272
Kzo9I GATC 4 cut(s) 120, 227, 302, 372
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 5 cut(s) 128, 173, 183, 187, 286
Lsp1109I GCAGC 1 cut(s) 425
MaeI CTAG 2 cut(s) 20, 215
MaeIII GTNAC 1 cut(s) 466
MalI GATC 4 cut(s) 122, 229, 304, 374
MboI GATC 4 cut(s) 120, 227, 302, 372
MboII GAAGA 4 cut(s) 237, 422, 469, 472
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 4 cut(s) 68, 84, 192, 288
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 3 cut(s) 342, 364, 374
MroI TCCGGA 1 cut(s) 272
MseI TTAA 2 cut(s) 344, 556
MspI CCGG 1 cut(s) 273
NdeII GATC 4 cut(s) 120, 227, 302, 372
NlaIII CATG 2 cut(s) 187, 405
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 160, 538
PkrI GCNGC 1 cut(s) 415
PspEI GGTNACC 1 cut(s) 466
PsuI RGATCY 1 cut(s) 372
SaqAI TTAA 2 cut(s) 344, 556
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 4 cut(s) 120, 227, 302, 372
SduI GDGCHC 1 cut(s) 519
SetI ASST 7 cut(s) 40, 134, 154, 216, 356, 385, 491
SfcI CTRYAG 3 cut(s) 127, 153, 258
SphI GCATGC 1 cut(s) 405
Sse9I AATT 4 cut(s) 68, 84, 192, 288
SsiI CCGC 1 cut(s) 234
SspMI CTAG 2 cut(s) 20, 215
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 455, 514
TaqI TCGA 1 cut(s) 238
TasI AATT 4 cut(s) 68, 84, 192, 288
TfiI GAWTC 2 cut(s) 160, 538
Tru1I TTAA 2 cut(s) 344, 556
Tru9I TTAA 2 cut(s) 344, 556
TscAI CASTG 2 cut(s) 147, 519
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 2 cut(s) 147, 519
XceI RCATGY 1 cut(s) 405
XspI CTAG 2 cut(s) 20, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.