RchiOBHm_Chr2g0170831

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000534
Physical Location & Seq
Reverse (-)
84628438 .. 84628980
543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53832

Sequence Viewer

Length: 360 bp
ATGTGCAATGAATTATATATGGAAAATAAGTACCGACTTAGATTACTAATATTTGGGAGTGTGTTGCGTATTGGTATTCATATCTGGTGCTTGCACCAAAAGGGGCCTATCTTTGTAGCAATGTTTAGGCCTTTGGGAATTGCCATTGCTGCAGTGATGGTAGTCATCTTCCTCGGCGATTCACTTCACCTTGGCAGTGTGATTGGATCTATCATTATAGCAATTGGGTTCTATGCTGTGATGTGGGCACAGATAAAAGAAAAGAGCACTACTCTTATGGAGAGTGATGTCCAAAGCTTGGCATCATCGACCCAAAAGACCCCACTCTTGCAATGCAGAACCACCAGAGAAGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

119

Amino Acids

13.33

Weight (kDa)

8.93

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AclWI GGATC 1 cut(s) 214
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 298
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw21I GWGCWC 1 cut(s) 269
AlwI GGATC 1 cut(s) 214
AoxI GGCC 2 cut(s) 104, 128
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 256, 288
BsaJI CCNNGG 2 cut(s) 172, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse3DI GCAATG 4 cut(s) 13, 126, 144, 338
BseDI CCNNGG 2 cut(s) 172, 190
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 4 cut(s) 13, 126, 144, 338
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 2 cut(s) 106, 130
BsiHKAI GWGCWC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 298
BsnI GGCC 2 cut(s) 106, 130
Bsp1286I GDGCHC 2 cut(s) 250, 269
Bsp143I GATC 1 cut(s) 206
BspANI GGCC 2 cut(s) 106, 130
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 214
BsrDI GCAATG 4 cut(s) 13, 126, 144, 338
BssECI CCNNGG 2 cut(s) 172, 190
BssMI GATC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 38
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 2 cut(s) 106, 130
BtsI GCAGTG 2 cut(s) 159, 202
BtsIMutI CAGTG 2 cut(s) 159, 202
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 3 cut(s) 106, 130, 297
CviKI_1 RGCY 3 cut(s) 106, 130, 297
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaiI YATR 8 cut(s) 16, 18, 20, 81, 218, 234, 278, 358
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 106, 130
HindIII AAGCTT 1 cut(s) 295
HinfI GANTC 1 cut(s) 179
HphI GGTGA 1 cut(s) 179
HpyCH4V TGCA 5 cut(s) 6, 94, 152, 331, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 206
LpnPI CCDG 1 cut(s) 70
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 311
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 1 cut(s) 160
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 250, 269
MluCI AATT 3 cut(s) 11, 138, 222
MnlI CCTC 1 cut(s) 182
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 1 cut(s) 153
PceI AGGCCT 1 cut(s) 130
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 104
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 250, 269
SetI ASST 2 cut(s) 192, 299
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 150
SgeI CNNG 6 cut(s) 97, 103, 185, 203, 310, 340
Sse9I AATT 3 cut(s) 11, 138, 222
SseBI AGGCCT 1 cut(s) 130
SspI AATATT 1 cut(s) 51
StuI AGGCCT 1 cut(s) 130
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 1 cut(s) 308
TasI AATT 3 cut(s) 11, 138, 222
TfiI GAWTC 1 cut(s) 179
TscAI CASTG 2 cut(s) 159, 202
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 24, 68
TspRI CASTG 2 cut(s) 159, 202
Van91I CCANNNNNTGG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.