Rw2G051700

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000534
Physical Location & Seq
Reverse (-)
79361827 .. 79363596
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051700.1

Sequence Viewer

Length: 1071 bp
ATGGCACTTGAATCTCGTATATGGGGCTCAGTGCCTTTTGCTGCCATGGTGTTGGTCGAGTGCGCAGAAATTGGAGTGTCAACGATAAGTAAAGCAGCCATGTCAAGAGGGATGAGCCACTTTGTTTTCATCGTTTACTATAATGCACTCGGTACCGTCCTGCTTTTCCCTTATTTCATCTTCCAAAGAAACAAGAGAGCTCCTTTGAATTGCAGACTCATTTGTAGATTCTTCCTTCTTGGCTTAATAGGGAGTTCAGGAAAAATTTTGTTCTTTGCTGGTGTCAAATACAGTTCACCTACTCTTTCAGCAGCACTGGCAAATCTTACCCCCATCTTCACTTTCTTGCTTGCCGTAGCTTTCAGGATGGAAAAGCTTGATTTGAGGCAACCAAGCGGTCAAGCCAAATCCTTGGGCACCATAATATCGGTGTGTGGGGCACTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTACCACATTCTGGCTTCAAAAATCATCATATACATTCAGAGCACTCAGCGTGGGTTTTCGGAGGTCTTCTACTTGCAATTCAATGTATTGTGTCTTCATCATGGAATATCGCTCAGGCAGCTACGGTCAAGGATTATCCAGAAGAAATGACCATAGTCTTCTTCTACACCCTCTTTTTGACGATTCAATGCTCAGTTATCTCACTGTTTGTGGAATGGAAAAATCCAAGTGCATGGAAATTGGAGCTCGGAATTGAGATGGTTGCCATTCTCTATGCGGCGATTTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTCAAGCCATTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTCGGTGATGCTCTTTATCTTGGCAGTGTGATCGGATCTGTTGTAATTGCGTTCGGATTTTATACGGTGATATGGGCACAAATAAAAGAAAAGAAGATGGTGCCTGATAATGAAGTGCAAAGATTAGAATCATCCATCCAAAGGGCTCCTCTTTTGCCAACCGATGTCACTGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

356

Amino Acids

39.24

Weight (kDa)

9.19

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 25 - 151 1.4e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 3 cut(s) 152, 416, 991
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 3 cut(s) 396, 764, 787
AclWI GGATC 1 cut(s) 934
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 497, 1032
AgsI TTSAA 6 cut(s) 11, 208, 505, 569, 674, 847
AluBI AGCT 5 cut(s) 200, 359, 376, 608, 733
AluI AGCT 5 cut(s) 200, 359, 376, 608, 733
Alw21I GWGCWC 3 cut(s) 202, 531, 735
AlwI GGATC 1 cut(s) 934
AoxI GGCC 2 cut(s) 463, 824
ApaI GGGCCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 41, 95, 311, 605
ApoI RAATTY 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 463, 464, 824
AsuHPI GGTGA 3 cut(s) 288, 908, 970
BaeGI GKGCMC 4 cut(s) 419, 442, 467, 970
BanI GGYRCC 3 cut(s) 152, 416, 991
BanII GRGCYC 5 cut(s) 29, 202, 467, 735, 1039
BarI GAAGNNNNNNTAC 2 cut(s) 565, 597
BbsI GAAGAC 3 cut(s) 545, 573, 637
Bbv12I GWGCWC 3 cut(s) 202, 531, 735
BbvI GCAGC 4 cut(s) 28, 107, 323, 617
BccI CCATC 6 cut(s) 341, 361, 472, 739, 982, 1034
BceAI ACGGC 1 cut(s) 338
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BisI GCNGC 5 cut(s) 42, 96, 312, 606, 765
BlsI GCNGC 5 cut(s) 43, 97, 313, 607, 766
BmgT120I GGNCC 3 cut(s) 463, 464, 824
BmiI GGNNCC 6 cut(s) 154, 418, 465, 825, 993, 1038
BmsI GCATC 1 cut(s) 889
BoxI GACNNNNGTC 1 cut(s) 641
BpiI GAAGAC 3 cut(s) 545, 573, 637
Bpu10I CCTNAGC 1 cut(s) 600
BsaBI GATNNNNATC 1 cut(s) 1018
BsaJI CCNNGG 3 cut(s) 45, 411, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 1032
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 1018
BseDI CCNNGG 3 cut(s) 45, 411, 892
BseGI GGATG 4 cut(s) 117, 372, 1022, 1026
BseJI GATNNNNATC 1 cut(s) 1018
BseLI CCNNNNNNNGG 2 cut(s) 497, 1032
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 4 cut(s) 42, 546, 614, 693
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 1029
BseSI GKGCMC 4 cut(s) 419, 442, 467, 970
BseXI GCAGC 4 cut(s) 28, 107, 323, 617
BshFI GGCC 2 cut(s) 465, 826
BshNI GGYRCC 3 cut(s) 152, 416, 991
BsiHKAI GWGCWC 3 cut(s) 202, 531, 735
BslI CCNNNNNNNGG 2 cut(s) 497, 1032
BsnI GGCC 2 cut(s) 465, 826
Bsp120I GGGCCC 1 cut(s) 463
Bsp1286I GDGCHC 9 cut(s) 29, 202, 419, 442, 467, 531, 735, 970, 1039
Bsp143I GATC 2 cut(s) 921, 926
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 3 cut(s) 396, 764, 787
BspANI GGCC 2 cut(s) 465, 826
BspCNI CTCAG 4 cut(s) 41, 545, 613, 692
BspLI GGNNCC 6 cut(s) 154, 418, 465, 825, 993, 1038
BspPI GGATC 1 cut(s) 934
BspT107I GGYRCC 3 cut(s) 152, 416, 991
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 3 cut(s) 45, 411, 892
BssMI GATC 2 cut(s) 921, 926
BssT1I CCWWGG 2 cut(s) 45, 411
Bst4CI ACNGT 5 cut(s) 157, 293, 613, 693, 958
BstC8I GCNNGC 2 cut(s) 351, 812
BstDEI CTNAG 4 cut(s) 28, 532, 600, 679
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 117, 372, 1022, 1026
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 924, 929
BstMBI GATC 2 cut(s) 921, 926
BstMWI GCNNNNNNNGC 2 cut(s) 317, 605
BstPAI GACNNNNGTC 1 cut(s) 641
BstSLI GKGCMC 4 cut(s) 419, 442, 467, 970
BstV1I GCAGC 4 cut(s) 28, 107, 323, 617
BstV2I GAAGAC 3 cut(s) 545, 573, 637
BstX2I RGATCY 1 cut(s) 926
BstXI CCANNNNNNTGG 3 cut(s) 52, 412, 720
BstYI RGATCY 1 cut(s) 926
BsuRI GGCC 2 cut(s) 465, 826
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 4 cut(s) 117, 372, 1022, 1026
BtsI GCAGTG 2 cut(s) 876, 922
BtsIMutI CAGTG 7 cut(s) 36, 314, 440, 689, 876, 922, 1059
Cac8I GCNNGC 2 cut(s) 351, 812
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 463, 464, 824
Csp6I GTAC 1 cut(s) 153
CviAII CATG 6 cut(s) 46, 100, 588, 720, 800, 841
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 28, 532, 600, 679
DpnI GATC 2 cut(s) 923, 928
DpnII GATC 2 cut(s) 921, 926
Ecl136II GAGCTC 2 cut(s) 200, 733
Eco130I CCWWGG 2 cut(s) 45, 411
Eco24I GRGCYC 5 cut(s) 29, 202, 467, 735, 1039
Eco53kI GAGCTC 2 cut(s) 200, 733
EcoICRI GAGCTC 2 cut(s) 200, 733
EcoO109I RGGNCCY 3 cut(s) 463, 464, 824
EcoT14I CCWWGG 2 cut(s) 45, 411
EcoT38I GRGCYC 5 cut(s) 29, 202, 467, 735, 1039
ErhI CCWWGG 2 cut(s) 45, 411
FaeI CATG 6 cut(s) 49, 103, 591, 723, 803, 844
FatI CATG 6 cut(s) 45, 99, 587, 719, 799, 840
Fnu4HI GCNGC 5 cut(s) 42, 96, 312, 606, 765
FokI GGATG 4 cut(s) 124, 379, 1009, 1013
FriOI GRGCYC 5 cut(s) 29, 202, 467, 735, 1039
Fsp4HI GCNGC 5 cut(s) 42, 96, 312, 606, 765
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 42, 96, 312, 606, 765
HaeIII GGCC 2 cut(s) 465, 826
HhaI GCGC 1 cut(s) 65
Hin1II CATG 6 cut(s) 49, 103, 591, 723, 803, 844
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 5 cut(s) 11, 216, 228, 670, 1019
HphI GGTGA 3 cut(s) 288, 908, 970
Hpy166II GTNNAC 3 cut(s) 81, 136, 296
Hpy188I TCNGA 5 cut(s) 526, 548, 737, 926, 947
Hpy188III TCNNGA 4 cut(s) 105, 258, 364, 626
Hpy8I GTNNAC 3 cut(s) 81, 136, 296
HpyAV CCTTC 3 cut(s) 245, 463, 814
HpyCH4III ACNGT 5 cut(s) 157, 293, 613, 693, 958
HpyCH4V TGCA 7 cut(s) 146, 213, 563, 719, 814, 869, 1009
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 605
HpyF3I CTNAG 4 cut(s) 28, 532, 600, 679
Hsp92II CATG 6 cut(s) 49, 103, 591, 723, 803, 844
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 2 cut(s) 921, 926
LmnI GCTCC 3 cut(s) 205, 730, 1042
Lsp1109I GCAGC 4 cut(s) 28, 107, 323, 617
LweI GCATC 1 cut(s) 889
MaeIII GTNAC 2 cut(s) 448, 1057
MalI GATC 2 cut(s) 923, 928
MboI GATC 2 cut(s) 921, 926
MboII GAAGA 9 cut(s) 172, 223, 328, 545, 573, 637, 640, 641, 997
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 9 cut(s) 29, 202, 419, 442, 467, 531, 735, 970, 1039
MluCI AATT 8 cut(s) 69, 208, 264, 564, 725, 738, 858, 936
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 6 cut(s) 101, 378, 542, 668, 902, 1050
MseI TTAA 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 317, 605
NcoI CCATGG 1 cut(s) 45
NdeII GATC 2 cut(s) 921, 926
NlaIII CATG 6 cut(s) 49, 103, 591, 723, 803, 844
NlaIV GGNNCC 6 cut(s) 154, 418, 465, 825, 993, 1038
NmuCI GTSAC 2 cut(s) 448, 1057
NsbI TGCGCA 1 cut(s) 64
PfeI GAWTC 4 cut(s) 11, 228, 670, 1019
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 5 cut(s) 43, 97, 313, 607, 766
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PshAI GACNNNNGTC 1 cut(s) 641
Psp124BI GAGCTC 2 cut(s) 202, 735
PspN4I GGNNCC 6 cut(s) 154, 418, 465, 825, 993, 1038
PspOMI GGGCCC 1 cut(s) 463
PspPI GGNCC 3 cut(s) 463, 464, 824
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 2 cut(s) 202, 735
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 5 cut(s) 42, 96, 312, 606, 765
Sau3AI GATC 2 cut(s) 921, 926
Sau96I GGNCC 3 cut(s) 463, 464, 824
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 9 cut(s) 29, 202, 419, 442, 467, 531, 735, 970, 1039
SetI ASST 8 cut(s) 202, 301, 361, 378, 455, 553, 610, 735
SfaNI GCATC 1 cut(s) 889
Sse9I AATT 8 cut(s) 69, 208, 264, 564, 725, 738, 858, 936
SsiI CCGC 3 cut(s) 396, 764, 787
SstI GAGCTC 2 cut(s) 202, 735
StyI CCWWGG 2 cut(s) 45, 411
TaaI ACNGT 5 cut(s) 157, 293, 613, 693, 958
TaqI TCGA 1 cut(s) 57
TasI AATT 8 cut(s) 69, 208, 264, 564, 725, 738, 858, 936
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 4 cut(s) 11, 228, 670, 1019
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 7 cut(s) 36, 321, 447, 696, 876, 922, 1066
TseFI GTSAC 2 cut(s) 448, 1057
TseI GCWGC 4 cut(s) 41, 95, 311, 605
Tsp45I GTSAC 2 cut(s) 448, 1057
TspDTI ATGAA 5 cut(s) 118, 166, 573, 788, 1017
TspRI CASTG 7 cut(s) 36, 321, 447, 696, 876, 922, 1066
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.