Rroxscaffold_2G00081060

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000534
Physical Location & Seq
Forward (+)
4062017 .. 4067600
5584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081060.1

Sequence Viewer

Length: 867 bp
ATGGCACTTGAATCTCGTATATGGGGCTCAGTGCCTTTTGCTGCCATGGTGTTGGTCGAGTGCGCAGAAATTGGAGTATCAACGATAAGTAAAGCAGCCATGTCACGAGGGATGAGCCATTTTGTTTTCATTGTTTACTATAATGCACTCGGTACCGTCCTGCTTTTCCCTTATTTCATCTTCCAAAGGGTAACCAGGACACTTACTAATGCTCTCTCAGCCTCTCATATTCAATTGGTCATTGAAATGAGTTCACCTACTCTTTCAGCAGCACTGGCAAATCTTACCCCCATCTTCACTTTCTTGCTTGCCGTAGCTTTCAGGATGGAAAAGCTTGATTTGAGGCAACCAAGCGGTCAAGCCAAATCCTTGGGCACCATTATATCGGTGTGTGGGGCACTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTACCACATTCTGGCTTCAAAAATCAGCATATACATTCAGAGCACTCAGCGTGGGTTTTCGGAGGTCTTCTACTTGCAATTCAATGTATTGTGTCTTCATCATGGAATATCGCTCAGGCGATCTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTCAAGCCATTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTTGGTGATGCTCTTTATCTTGGCAGTGTGATCGGATCTGTTGTAATTGCATTCGGATTTTATACGGTGATATGGGCACAAATAAAAGAAAAGAAGATGGTGCCTGATAATGAAGTGCAAAGATTAGAATCATCCATCCAAAGGGCTCCTCTTTTGCCAACTGATGTCACTGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

288

Amino Acids

31.39

Weight (kDa)

9.21

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 3 cut(s) 152, 374, 787
AccB7I CCANNNNNTGG 1 cut(s) 455
AciI CCGC 2 cut(s) 354, 583
AclWI GGATC 1 cut(s) 730
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 455, 828
AgsI TTSAA 6 cut(s) 11, 233, 245, 463, 527, 643
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 2 cut(s) 317, 334
AluI AGCT 2 cut(s) 317, 334
Alw21I GWGCWC 1 cut(s) 489
AlwI GGATC 1 cut(s) 730
AoxI GGCC 2 cut(s) 421, 620
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 3 cut(s) 41, 95, 269
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 421, 422, 620
AsuHPI GGTGA 3 cut(s) 246, 704, 766
BaeGI GKGCMC 4 cut(s) 377, 400, 425, 766
BanI GGYRCC 3 cut(s) 152, 374, 787
BanII GRGCYC 3 cut(s) 29, 425, 835
BarI GAAGNNNNNNTAC 2 cut(s) 523, 555
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 2 cut(s) 503, 531
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 3 cut(s) 28, 107, 281
BccI CCATC 5 cut(s) 299, 319, 430, 778, 830
BceAI ACGGC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BciT130I CCWGG 1 cut(s) 196
BisI GCNGC 3 cut(s) 42, 96, 270
BlsI GCNGC 3 cut(s) 43, 97, 271
Bme1390I CCNGG 1 cut(s) 196
BmgT120I GGNCC 3 cut(s) 421, 422, 620
BmiI GGNNCC 6 cut(s) 154, 376, 423, 621, 789, 834
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 685
BpiI GAAGAC 2 cut(s) 503, 531
Bpu10I CCTNAGC 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 814
BsaJI CCNNGG 3 cut(s) 45, 369, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 828
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 814
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 3 cut(s) 45, 369, 688
BseGI GGATG 4 cut(s) 117, 330, 818, 822
BseJI GATNNNNATC 1 cut(s) 814
BseLI CCNNNNNNNGG 2 cut(s) 455, 828
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 4 cut(s) 42, 231, 504, 572
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 825
BseSI GKGCMC 4 cut(s) 377, 400, 425, 766
BseXI GCAGC 3 cut(s) 28, 107, 281
BshFI GGCC 2 cut(s) 423, 622
BshNI GGYRCC 3 cut(s) 152, 374, 787
BsiHKAI GWGCWC 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 455, 828
BsmI GAATGC 1 cut(s) 737
BsnI GGCC 2 cut(s) 423, 622
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 7 cut(s) 29, 377, 400, 425, 489, 766, 835
Bsp143I GATC 3 cut(s) 564, 717, 722
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 354, 583
BspANI GGCC 2 cut(s) 423, 622
BspCNI CTCAG 4 cut(s) 41, 230, 503, 571
BspLI GGNNCC 6 cut(s) 154, 376, 423, 621, 789, 834
BspPI GGATC 1 cut(s) 730
BspT107I GGYRCC 3 cut(s) 152, 374, 787
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 45, 369, 688
BssMI GATC 3 cut(s) 564, 717, 722
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 3 cut(s) 45, 369, 688
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 157, 754
BstC8I GCNNGC 2 cut(s) 309, 608
BstDEI CTNAG 4 cut(s) 28, 217, 490, 558
BstDSI CCRYGG 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 4 cut(s) 117, 330, 818, 822
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 567, 720, 725
BstMBI GATC 3 cut(s) 564, 717, 722
BstMWI GCNNNNNNNGC 2 cut(s) 218, 275
BstNI CCWGG 1 cut(s) 196
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 194
BstSLI GKGCMC 4 cut(s) 377, 400, 425, 766
BstV1I GCAGC 3 cut(s) 28, 107, 281
BstV2I GAAGAC 2 cut(s) 503, 531
BstX2I RGATCY 1 cut(s) 722
BstXI CCANNNNNNTGG 2 cut(s) 52, 370
BstYI RGATCY 1 cut(s) 722
BsuRI GGCC 2 cut(s) 423, 622
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 4 cut(s) 117, 330, 818, 822
BtsI GCAGTG 2 cut(s) 672, 718
BtsIMutI CAGTG 6 cut(s) 36, 272, 398, 672, 718, 855
Cac8I GCNNGC 2 cut(s) 309, 608
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 421, 422, 620
Csp6I GTAC 1 cut(s) 153
CviAII CATG 5 cut(s) 46, 100, 546, 596, 637
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 28, 217, 490, 558
DpnI GATC 3 cut(s) 566, 719, 724
DpnII GATC 3 cut(s) 564, 717, 722
Eco130I CCWWGG 3 cut(s) 45, 369, 688
Eco24I GRGCYC 3 cut(s) 29, 425, 835
Eco91I GGTNACC 1 cut(s) 190
EcoO109I RGGNCCY 3 cut(s) 421, 422, 620
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 3 cut(s) 45, 369, 688
EcoT38I GRGCYC 3 cut(s) 29, 425, 835
ErhI CCWWGG 3 cut(s) 45, 369, 688
FaeI CATG 5 cut(s) 49, 103, 549, 599, 640
FatI CATG 5 cut(s) 45, 99, 545, 595, 636
Fnu4HI GCNGC 3 cut(s) 42, 96, 270
FokI GGATG 4 cut(s) 124, 337, 805, 809
FriOI GRGCYC 3 cut(s) 29, 425, 835
Fsp4HI GCNGC 3 cut(s) 42, 96, 270
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 42, 96, 270
HaeIII GGCC 2 cut(s) 423, 622
HhaI GCGC 1 cut(s) 65
Hin1II CATG 5 cut(s) 49, 103, 549, 599, 640
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 11, 815
HphI GGTGA 3 cut(s) 246, 704, 766
Hpy166II GTNNAC 2 cut(s) 136, 254
Hpy188I TCNGA 4 cut(s) 484, 506, 722, 743
Hpy188III TCNNGA 2 cut(s) 105, 322
Hpy8I GTNNAC 2 cut(s) 136, 254
HpyAV CCTTC 2 cut(s) 421, 610
HpyCH4III ACNGT 2 cut(s) 157, 754
HpyCH4V TGCA 6 cut(s) 146, 521, 610, 665, 737, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 275
HpyF3I CTNAG 4 cut(s) 28, 217, 490, 558
Hsp92II CATG 5 cut(s) 49, 103, 549, 599, 640
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 564, 717, 722
LmnI GCTCC 1 cut(s) 838
Lsp1109I GCAGC 3 cut(s) 28, 107, 281
LweI GCATC 1 cut(s) 685
MaeIII GTNAC 4 cut(s) 102, 190, 406, 853
MalI GATC 3 cut(s) 566, 719, 724
MboI GATC 3 cut(s) 564, 717, 722
MboII GAAGA 5 cut(s) 172, 286, 503, 531, 793
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 7 cut(s) 29, 377, 400, 425, 489, 766, 835
MluCI AATT 5 cut(s) 69, 233, 522, 654, 732
MnlI CCTC 5 cut(s) 101, 232, 336, 500, 846
MslI CAYNNNNRTG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 218, 275
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 564, 717, 722
NlaIII CATG 5 cut(s) 49, 103, 549, 599, 640
NlaIV GGNNCC 6 cut(s) 154, 376, 423, 621, 789, 834
NmuCI GTSAC 3 cut(s) 102, 406, 853
NsbI TGCGCA 1 cut(s) 64
PctI GAATGC 1 cut(s) 737
PfeI GAWTC 2 cut(s) 11, 815
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 3 cut(s) 43, 97, 271
Psp6I CCWGG 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 6 cut(s) 154, 376, 423, 621, 789, 834
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 3 cut(s) 421, 422, 620
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 245
SatI GCNGC 3 cut(s) 42, 96, 270
Sau3AI GATC 3 cut(s) 564, 717, 722
Sau96I GGNCC 3 cut(s) 421, 422, 620
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 7 cut(s) 29, 377, 400, 425, 489, 766, 835
SetI ASST 5 cut(s) 259, 319, 336, 413, 511
SfaNI GCATC 1 cut(s) 685
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 5 cut(s) 69, 233, 522, 654, 732
SsiI CCGC 2 cut(s) 354, 583
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 3 cut(s) 45, 369, 688
TaaI ACNGT 2 cut(s) 157, 754
TaqI TCGA 1 cut(s) 57
TasI AATT 5 cut(s) 69, 233, 522, 654, 732
TfiI GAWTC 2 cut(s) 11, 815
TscAI CASTG 6 cut(s) 36, 279, 405, 672, 718, 862
TseFI GTSAC 3 cut(s) 102, 406, 853
TseI GCWGC 3 cut(s) 41, 95, 269
Tsp45I GTSAC 3 cut(s) 102, 406, 853
TspDTI ATGAA 5 cut(s) 118, 166, 531, 584, 813
TspRI CASTG 6 cut(s) 36, 279, 405, 672, 718, 862
Van91I CCANNNNNTGG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.