Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000534

Physical Location & Seq

Genomic Coordinates Forward (+)

4055584 .. 4058860

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAAATCTTATGCCGATCTTTACATTCATACTGGAGATCACTTTCAGGATGGAAAAGATGGATTTGAGGAGGTCAAGCTGTCAAGCCATAGTGTCAGGGACTATTCTCTCAGTATCTGGAGCATTTGTAGTAGTTCTATACGAGGGATCAGTAATCTTTTCACCATCCAACTCTCCTGACCAGAACTTCATGATGATCTCACAGCAGTCAAAGTGGGTCTTTGGAGGTCTTATGCTTGCAATGGCCAGCGTTTTGGCCGCATCATGGAGCATTCTTCAGGCTTTTATATGGGATTATGGATATGTAAGTACTGATATAGATTGCAAATTTAGGCTGTATTTGGGTGTGTTCCATGTTGGTGTTGAAACCTGGTGCTTTTCCCAAAAGGGACCTATCTTTGTAGCCATGTTCAGGCCCTTGGGAGTTGCCATTGCTGCAGCCATGGTAGTCATCTTCCTCGGCAAAGCACTTCACCTTGGCAGTGTGATTGGATCTATCATTATTGCAATTGGGTTTTATGCTATGATATGGGCACAAATCAAAGAAAATAGCACCAAAGGGAAGGAGAAGGTACGAAGCATGGATCAGCCTTGTAAATGGGGCATACTGTTACCTTTTGCAACCATGGTTACAGTTCAGTTTACCAATGTGGGGACATCAACTATAAGCAAAGCAGCTATGTCAAGAGGAATGAGCAGTTATGTTTTGATTGTCTACTCTAATGCCCTTGCTACCCTCCTTCTCCTTCCCTCTTTCATTTTACAAAAGAAGCAGGTTTCTCTTACCTTTTCGTTCCTTTGCGGACTCTTCCTCCTAGGCCTAATCGGGTATGATGCAGCCAAAATCACGCATTGCATTGCGTCACTTCTTTCGAATCCGAATACTTGGGTTATAAGACCTGGCATTGAGATGATCTCCATTGTCTGCTCAGCTATAATGGGGAATGTGTTCCATGTTGGTGTTCATACTTGGTGCTTGCACCAAAAGGGACCTGTCTTTGTAGCCATGTTCAGACCTTTGGGAGTTGCCATTGCGGCTGTCATGGTGGTCTTCTTCCTCGGCGATCCGCTTCATCTTGGCAGGCAATTTCTTTACTTGATTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

369

Amino Acids

40.57

Weight (kDa)

9.27

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica	MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica	Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis	pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis	RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata	RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora	Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa	Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha	Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana	Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	896
Acc36I	ACCTGC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	4 cut(s)	261, 804, 1037, 1070
AclWI	GGATC	4 cut(s)	157, 502, 594, 1061
AcoI	YGGCCR	2 cut(s)	246, 258
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	313, 576
AfiI	CCNNNNNNNGG	3 cut(s)	267, 414, 654
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	371, 901
AluBI	AGCT	3 cut(s)	81, 680, 935
AluI	AGCT	3 cut(s)	81, 680, 935
AlwI	GGATC	4 cut(s)	157, 502, 594, 1061
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	4 cut(s)	246, 258, 416, 820
ApeKI	GCWGC	4 cut(s)	437, 440, 677, 839
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	950
AspA2I	CCTAGG	1 cut(s)	817
AspS9I	GGNCC	3 cut(s)	392, 417, 992
AsuHPI	GGTGA	2 cut(s)	156, 467
AsuII	TTCGAA	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	392, 992
AvrII	CCTAGG	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	1045
BbvI	GCAGC	4 cut(s)	424, 452, 689, 851
BccI	CCATC	3 cut(s)	46, 55, 175
BciT130I	CCWGG	2 cut(s)	373, 903
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	766
BglI	GCCNNNNNGGC	1 cut(s)	1037
BisI	GCNGC	6 cut(s)	261, 438, 441, 678, 840, 1038
BlnI	CCTAGG	1 cut(s)	817
BlpI	GCTNAGC	1 cut(s)	931
BlsI	GCNGC	6 cut(s)	262, 439, 442, 679, 841, 1039
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	373, 903
Bme18I	GGWCC	2 cut(s)	392, 992
BmgT120I	GGNCC	3 cut(s)	392, 417, 992
BmiI	GGNNCC	2 cut(s)	393, 993
BmrFI	CCNGG	2 cut(s)	373, 903
BmsI	GCATC	2 cut(s)	272, 826
BpiI	GAAGAC	1 cut(s)	1045
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
BpmI	CTGGAG	2 cut(s)	56, 141
Bpu1102I	GCTNAGC	1 cut(s)	931
Bpu14I	TTCGAA	1 cut(s)	875
BsaJI	CCNNGG	7 cut(s)	420, 444, 460, 478, 627, 817, 1060
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 798, 828
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 414, 654
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	5 cut(s)	249, 432, 853, 858, 1032
BseBI	CCWGG	2 cut(s)	373, 903
BseDI	CCNNGG	7 cut(s)	420, 444, 460, 478, 627, 817, 1060
BseGI	GGATG	2 cut(s)	57, 167
BseLI	CCNNNNNNNGG	3 cut(s)	267, 414, 654
BseMI	GCAATG	5 cut(s)	249, 432, 853, 858, 1032
BseMII	CTCAG	2 cut(s)	126, 945
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	4 cut(s)	424, 452, 689, 851
BshFI	GGCC	4 cut(s)	248, 260, 418, 822
BslFI	GGGAC	4 cut(s)	115, 405, 670, 1005
BslI	CCNNNNNNNGG	3 cut(s)	267, 414, 654
BsmFI	GGGAC	4 cut(s)	115, 405, 670, 1005
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	4 cut(s)	248, 260, 418, 822
Bsp119I	TTCGAA	1 cut(s)	875
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
Bsp1720I	GCTNAGC	1 cut(s)	931
Bsp19I	CCATGG	2 cut(s)	444, 627
BspACI	CCGC	4 cut(s)	261, 804, 1037, 1070
BspANI	GGCC	4 cut(s)	248, 260, 418, 822
BspCNI	CTCAG	2 cut(s)	125, 944
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	393, 993
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	4 cut(s)	157, 502, 594, 1061
BspT104I	TTCGAA	1 cut(s)	875
BsrDI	GCAATG	5 cut(s)	249, 432, 853, 858, 1032
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	7 cut(s)	420, 444, 460, 478, 627, 817, 1060
BssMI	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
BssT1I	CCWWGG	5 cut(s)	420, 444, 478, 627, 817
Bst2UI	CCWGG	2 cut(s)	373, 903
Bst4CI	ACNGT	2 cut(s)	612, 637
Bst6I	CTCTTC	1 cut(s)	815
BstBI	TTCGAA	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	240, 250, 980, 1085
BstDEI	CTNAG	2 cut(s)	112, 931
BstDSI	CCRYGG	2 cut(s)	444, 627
BstF5I	GGATG	2 cut(s)	57, 167
BstKTI	GATC	8 cut(s)	21, 42, 152, 201, 497, 589, 918, 1069
BstMBI	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 1037
BstNI	CCWGG	2 cut(s)	373, 903
BstSCI	CCNGG	2 cut(s)	371, 901
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	424, 452, 689, 851
BstV2I	GAAGAC	1 cut(s)	1045
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	4 cut(s)	248, 260, 418, 822
BtgI	CCRYGG	2 cut(s)	444, 627
BtsCI	GGATG	2 cut(s)	57, 167
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	490
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	4 cut(s)	240, 250, 980, 1085
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	392, 417, 992
CseI	GACGC	1 cut(s)	852
CsiI	ACCWGGT	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	312, 575
CviQI	GTAC	2 cut(s)	312, 575
DdeI	CTNAG	2 cut(s)	112, 931
DpnI	GATC	8 cut(s)	20, 41, 151, 200, 496, 588, 917, 1068
DpnII	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
EaeI	YGGCCR	2 cut(s)	246, 258
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
Eco130I	CCWWGG	5 cut(s)	420, 444, 478, 627, 817
Eco147I	AGGCCT	1 cut(s)	822
Eco47I	GGWCC	2 cut(s)	392, 992
Eco57I	CTGAAG	1 cut(s)	263
EcoO109I	RGGNCCY	3 cut(s)	392, 417, 992
EcoRII	CCWGG	2 cut(s)	371, 901
EcoT14I	CCWWGG	5 cut(s)	420, 444, 478, 627, 817
ErhI	CCWWGG	5 cut(s)	420, 444, 478, 627, 817
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	4 cut(s)	115, 405, 670, 1005
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	6 cut(s)	261, 438, 441, 678, 840, 1038
FokI	GGATG	2 cut(s)	64, 154
Fsp4HI	GCNGC	6 cut(s)	261, 438, 441, 678, 840, 1038
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	6 cut(s)	261, 438, 441, 678, 840, 1038
GsuI	CTGGAG	2 cut(s)	56, 141
HaeIII	GGCC	4 cut(s)	248, 260, 418, 822
HgaI	GACGC	1 cut(s)	852
HinfI	GANTC	3 cut(s)	807, 877, 1102
HphI	GGTGA	2 cut(s)	156, 467
Hpy166II	GTNNAC	2 cut(s)	645, 718
Hpy188I	TCNGA	2 cut(s)	882, 1016
Hpy188III	TCNNGA	5 cut(s)	49, 120, 179, 193, 687
Hpy8I	GTNNAC	2 cut(s)	645, 718
HpyAV	CCTTC	4 cut(s)	559, 565, 752, 758
HpyCH4III	ACNGT	2 cut(s)	612, 637
HpyCH4V	TGCA	8 cut(s)	242, 327, 440, 509, 623, 839, 858, 982
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 1037
HpyF3I	CTNAG	2 cut(s)	112, 931
Kzo9I	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
LmnI	GCTCC	2 cut(s)	122, 270
Lsp1109I	GCAGC	4 cut(s)	424, 452, 689, 851
LweI	GCATC	2 cut(s)	272, 826
MabI	ACCWGGT	1 cut(s)	371
MaeI	CTAG	1 cut(s)	818
MaeIII	GTNAC	3 cut(s)	612, 631, 864
MalI	GATC	8 cut(s)	20, 41, 151, 200, 496, 588, 917, 1068
MboI	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
MboII	GAAGA	5 cut(s)	269, 448, 802, 1045, 1048
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	329, 510, 1088
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	801
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	950
MscI	TGGCCA	1 cut(s)	248
MslI	CAYNNNNRTG	3 cut(s)	360, 911, 960
Msp20I	TGGCCA	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	373, 903
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	373, 903
MwoI	GCNNNNNNNGC	2 cut(s)	437, 1037
NcoI	CCATGG	2 cut(s)	444, 627
NdeII	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
NlaIV	GGNNCC	2 cut(s)	393, 993
NmeAIII	GCCGAG	2 cut(s)	441, 1041
NmuCI	GTSAC	1 cut(s)	864
NspV	TTCGAA	1 cut(s)	875
PagI	TCATGA	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	822
PctI	GAATGC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	950
PfeI	GAWTC	2 cut(s)	877, 1102
PkrI	GCNGC	6 cut(s)	262, 439, 442, 679, 841, 1039
PleI	GAGTC	1 cut(s)	801
PpsI	GAGTC	1 cut(s)	801
PpuMI	RGGWCCY	2 cut(s)	392, 992
PsiI	TTATAA	1 cut(s)	896
Psp5II	RGGWCCY	2 cut(s)	392, 992
Psp6I	CCWGG	2 cut(s)	371, 901
PspGI	CCWGG	2 cut(s)	371, 901
PspN4I	GGNNCC	2 cut(s)	393, 993
PspPI	GGNCC	3 cut(s)	392, 417, 992
PspPPI	RGGWCCY	2 cut(s)	392, 992
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	313, 576
RsaNI	GTAC	2 cut(s)	312, 575
RseI	CAYNNNNRTG	3 cut(s)	360, 911, 960
SatI	GCNGC	6 cut(s)	261, 438, 441, 678, 840, 1038
Sau3AI	GATC	8 cut(s)	18, 39, 149, 198, 494, 586, 915, 1066
Sau96I	GGNCC	3 cut(s)	392, 417, 992
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	1 cut(s)	801
ScrFI	CCNGG	2 cut(s)	373, 903
SduI	GDGCHC	1 cut(s)	538
SexAI	ACCWGGT	1 cut(s)	371
SfaNI	GCATC	2 cut(s)	272, 826
SfcI	CTRYAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	875
SinI	GGWCC	2 cut(s)	392, 992
SmiMI	CAYNNNNRTG	3 cut(s)	360, 911, 960
Sse9I	AATT	3 cut(s)	329, 510, 1088
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	4 cut(s)	261, 804, 1037, 1070
SspMI	CTAG	1 cut(s)	818
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	371, 901
StyI	CCWWGG	5 cut(s)	420, 444, 478, 627, 817
TaaI	ACNGT	2 cut(s)	612, 637
TaqI	TCGA	1 cut(s)	875
TasI	AATT	3 cut(s)	329, 510, 1088
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	2 cut(s)	263, 1040
TfiI	GAWTC	2 cut(s)	877, 1102
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	864
TseI	GCWGC	4 cut(s)	437, 440, 677, 839
Tsp45I	GTSAC	1 cut(s)	864
TspDTI	ATGAA	6 cut(s)	19, 181, 748, 956, 1064, 1094
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	392, 992
XapI	RAATTY	1 cut(s)	329
XmaJI	CCTAGG	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	950
XspI	CTAG	1 cut(s)	818
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.