pycom111g02950

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000534
Physical Location & Seq
Forward (+)
1765660 .. 1767726
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02950.7

Sequence Viewer

Length: 1074 bp
ATGGTGTGGCAACAGCGCATATGGGGGGCCGTGCCCTTCACTGCCATGGCAATCGTTGAGTGTGCAGAAGTTGGCGTGTCAACAATAAGCAAAGTTGCCATGGCGGAAGGGATGAGCCACTTTGTCTTCATTGTCTACTACAACGCTCTTGGTACCCTCTTGCTTCTCCCCTTCTTCATCTACCGAAGAAACAAGCGACCACCCTTGACTTTCAGGCTCATTTGCCAATTCTTTCTCCTCGGCCTAATAGGGAGCTCAGGGAAAATTCTGTTTTTCGCCGGTGTCAAAAACAGTTCGGCTATTCTTGCGGCAGCAATGGCGAATCTCACCCCAATTTTCACTTTCTTGCTTGCCATAATTTTCAGGATGGAAAAGCTAGACTTGAGAAAAGCAACCGGTTATGCCAAATCCTTGGGCGCCATTATAGCAGTGGGAGGGGCATTGATAGTGACCCTCTACGACGGCCCTGCTCTTTTGAATTCTTCCTTGTCTTCCGGCTTGAATCACTCGACTCATAGATCTTTCGTCTCACAGTCATCAACCTGGATCTTTGGAGGTATGGTACTTGCAATCCAATGCCTCGTATCTTCGACATGGAACATCGCTCAGGCAGCCACTGTGAAGGATTACCCGGAAGAAATGACCATAGTCTTCTTCTACACCATGTTTCTGACAATTCAATGCACAGTTATCTCTCTAATTGTGGAAAGGAATAATCTGAGTGCTTGGAAAATGGAGCTTCCCATTGAGATAATCGGCATTTTGTATGCGGCAATCTGTGTGAGTGTGTTTCGCATCAGTGTTCATGTCTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTTAAGCCCTTAGGAATCGCCATTGCAGCAGTTGTGGTGGTTGTTTTCCTTGGCAACACCTTTTATCTTGGCAGTTTGATTGGATCTATTGTGATCTCGCTGGGATTTTATACCGTGACATATGCACAACTAAAGGAGAAAATGATGGAGGTTGATAATGCAGTTCAACAATCAGAACCGTCGACCCAAACGACTCCGCTGTTGCGAAGCAGTAATGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

358

Amino Acids

39.21

Weight (kDa)

9.18

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 2 cut(s) 152, 416
AccI GTMKAC 2 cut(s) 135, 1031
AciI CCGC 4 cut(s) 104, 308, 770, 1046
AclWI GGATC 2 cut(s) 554, 940
AcsI RAATTY 2 cut(s) 264, 478
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 2 cut(s) 154, 564
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 4 cut(s) 478, 502, 680, 1016
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 3 cut(s) 255, 376, 739
AluI AGCT 3 cut(s) 255, 376, 739
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 2 cut(s) 554, 940
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 4 cut(s) 27, 241, 463, 830
ApeKI GCWGC 3 cut(s) 311, 611, 875
ApoI RAATTY 2 cut(s) 264, 478
AsiGI ACCGGT 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 2 cut(s) 18, 419
AspS9I GGNCC 3 cut(s) 27, 464, 830
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 36
BanI GGYRCC 2 cut(s) 152, 416
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 3 cut(s) 118, 483, 643
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 323, 623, 887
BccI CCATC 2 cut(s) 361, 988
BceAI ACGGC 2 cut(s) 14, 478
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 544
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 420
BglII AGATCT 1 cut(s) 518
BisI GCNGC 5 cut(s) 309, 312, 612, 771, 876
BlsI GCNGC 5 cut(s) 310, 313, 613, 772, 877
Bme1390I CCNGG 2 cut(s) 544, 632
BmgT120I GGNCC 3 cut(s) 27, 464, 830
BmiI GGNNCC 4 cut(s) 28, 154, 418, 831
BmrFI CCNGG 2 cut(s) 544, 632
BmsI GCATC 1 cut(s) 804
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 3 cut(s) 118, 483, 643
Bpu10I CCTNAGC 2 cut(s) 256, 606
BpuEI CTTGAG 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 5 cut(s) 45, 99, 238, 411, 898
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bse118I RCCGGY 2 cut(s) 278, 395
Bse21I CCTNAGG 1 cut(s) 859
Bse3DI GCAATG 2 cut(s) 321, 870
BseBI CCWGG 1 cut(s) 544
BseDI CCNNGG 5 cut(s) 45, 99, 238, 411, 898
BseGI GGATG 2 cut(s) 117, 372
BseMI GCAATG 2 cut(s) 321, 870
BseMII CTCAG 3 cut(s) 270, 620, 710
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 3 cut(s) 323, 623, 887
BseYI CCCAGC 1 cut(s) 949
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 4 cut(s) 29, 243, 465, 832
BshNI GGYRCC 2 cut(s) 152, 416
BshTI ACCGGT 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 4 cut(s) 279, 396, 495, 632
BsmAI GTCTC 1 cut(s) 532
BsmBI CGTCTC 1 cut(s) 532
BsnI GGCC 4 cut(s) 29, 243, 465, 832
Bsp1286I GDGCHC 2 cut(s) 36, 257
Bsp143I GATC 4 cut(s) 518, 546, 932, 942
Bsp19I CCATGG 2 cut(s) 45, 99
BspACI CCGC 4 cut(s) 104, 308, 770, 1046
BspANI GGCC 4 cut(s) 29, 243, 465, 832
BspCNI CTCAG 3 cut(s) 269, 619, 711
BspLI GGNNCC 4 cut(s) 28, 154, 418, 831
BspPI GGATC 2 cut(s) 554, 940
BspT107I GGYRCC 2 cut(s) 152, 416
BsrDI GCAATG 2 cut(s) 321, 870
BsrFI RCCGGY 2 cut(s) 278, 395
BssAI RCCGGY 2 cut(s) 278, 395
BssECI CCNNGG 5 cut(s) 45, 99, 238, 411, 898
BssMI GATC 4 cut(s) 518, 546, 932, 942
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 4 cut(s) 45, 99, 411, 898
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 6 cut(s) 293, 534, 619, 688, 964, 1029
BstACI GRCGYC 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 351, 818
BstDEI CTNAG 4 cut(s) 256, 606, 719, 859
BstDSI CCRYGG 2 cut(s) 45, 99
BstF5I GGATG 2 cut(s) 117, 372
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 2 cut(s) 18, 419
BstKTI GATC 4 cut(s) 521, 549, 935, 945
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 4 cut(s) 518, 546, 932, 942
BstMWI GCNNNNNNNGC 5 cut(s) 305, 317, 425, 611, 875
BstNI CCWGG 1 cut(s) 544
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 542, 630
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 323, 623, 887
BstV2I GAAGAC 3 cut(s) 118, 483, 643
BstX2I RGATCY 3 cut(s) 518, 546, 932
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 3 cut(s) 518, 546, 932
Bsu36I CCTNAGG 1 cut(s) 859
BsuRI GGCC 4 cut(s) 29, 243, 465, 832
BtgI CCRYGG 2 cut(s) 45, 99
BtgZI GCGATG 1 cut(s) 586
BtsCI GGATG 2 cut(s) 117, 372
BtsI GCAGTG 2 cut(s) 39, 435
BtsIMutI CAGTG 4 cut(s) 39, 435, 615, 805
Cac8I GCNNGC 2 cut(s) 351, 818
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 2 cut(s) 18, 419
Cfr10I RCCGGY 2 cut(s) 278, 395
Cfr13I GGNCC 3 cut(s) 27, 464, 830
Csp6I GTAC 2 cut(s) 153, 563
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 6 cut(s) 46, 100, 594, 664, 806, 847
CviQI GTAC 2 cut(s) 153, 563
DdeI CTNAG 4 cut(s) 256, 606, 719, 859
DinI GGCGCC 1 cut(s) 418
DpnI GATC 4 cut(s) 520, 548, 934, 944
DpnII GATC 4 cut(s) 518, 546, 932, 942
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 255
Eco130I CCWWGG 4 cut(s) 45, 99, 411, 898
Eco24I GRGCYC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 255
Eco81I CCTNAGG 1 cut(s) 859
EcoICRI GAGCTC 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 542
EcoT14I CCWWGG 4 cut(s) 45, 99, 411, 898
EcoT38I GRGCYC 1 cut(s) 257
EgeI GGCGCC 1 cut(s) 418
EheI GGCGCC 1 cut(s) 418
ErhI CCWWGG 4 cut(s) 45, 99, 411, 898
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 6 cut(s) 49, 103, 597, 667, 809, 850
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 6 cut(s) 45, 99, 593, 663, 805, 846
FauNDI CATATG 2 cut(s) 20, 970
FblI GTMKAC 2 cut(s) 135, 1031
Fnu4HI GCNGC 5 cut(s) 309, 312, 612, 771, 876
FokI GGATG 2 cut(s) 124, 379
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 5 cut(s) 309, 312, 612, 771, 876
FspBI CTAG 1 cut(s) 377
GlaI GCGC 2 cut(s) 17, 418
GluI GCNGC 5 cut(s) 309, 312, 612, 771, 876
GsaI CCCAGC 1 cut(s) 953
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 4 cut(s) 29, 243, 465, 832
HapII CCGG 4 cut(s) 279, 396, 495, 632
HhaI GCGC 2 cut(s) 18, 419
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 6 cut(s) 49, 103, 597, 667, 809, 850
Hin6I GCGC 2 cut(s) 16, 417
HinP1I GCGC 2 cut(s) 16, 417
HincII GTYRAC 2 cut(s) 81, 1032
HindII GTYRAC 2 cut(s) 81, 1032
HinfI GANTC 5 cut(s) 322, 502, 511, 864, 1042
HpaII CCGG 4 cut(s) 279, 396, 495, 632
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 3 cut(s) 81, 136, 1032
Hpy188I TCNGA 3 cut(s) 672, 720, 1024
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 3 cut(s) 81, 136, 1032
Hpy99I CGWCG 2 cut(s) 464, 1033
HpyAV CCTTC 5 cut(s) 46, 101, 181, 616, 820
HpyCH4III ACNGT 6 cut(s) 293, 534, 619, 688, 964, 1029
HpyCH4V TGCA 7 cut(s) 65, 569, 684, 820, 875, 974, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 317, 425, 611, 875
HpyF3I CTNAG 4 cut(s) 256, 606, 719, 859
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 6 cut(s) 49, 103, 597, 667, 809, 850
HspAI GCGC 2 cut(s) 16, 417
KasI GGCGCC 1 cut(s) 416
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 4 cut(s) 518, 546, 932, 942
LmnI GCTCC 2 cut(s) 252, 736
Lsp1109I GCAGC 3 cut(s) 323, 623, 887
LweI GCATC 1 cut(s) 804
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 2 cut(s) 448, 964
MalI GATC 4 cut(s) 520, 548, 934, 944
MboI GATC 4 cut(s) 518, 546, 932, 942
MboII GAAGA 9 cut(s) 118, 166, 198, 474, 483, 579, 643, 646, 647
MflI RGATCY 3 cut(s) 518, 546, 932
MhlI GDGCHC 2 cut(s) 36, 257
MluCI AATT 7 cut(s) 227, 264, 333, 357, 478, 675, 699
Mly113I GGCGCC 1 cut(s) 417
MlyI GAGTC 2 cut(s) 505, 1036
MnlI CCTC 7 cut(s) 167, 248, 428, 464, 548, 590, 991
MseI TTAA 1 cut(s) 852
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 1048
MspI CCGG 4 cut(s) 279, 396, 495, 632
MspR9I CCNGG 2 cut(s) 544, 632
MvaI CCWGG 1 cut(s) 544
MwoI GCNNNNNNNGC 5 cut(s) 305, 317, 425, 611, 875
NarI GGCGCC 1 cut(s) 417
NciI CCSGG 1 cut(s) 632
NcoI CCATGG 2 cut(s) 45, 99
NdeI CATATG 2 cut(s) 20, 970
NdeII GATC 4 cut(s) 518, 546, 932, 942
NlaIII CATG 6 cut(s) 49, 103, 597, 667, 809, 850
NlaIV GGNNCC 4 cut(s) 28, 154, 418, 831
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 448, 964
PcsI WCGNNNNNNNCGW 1 cut(s) 1037
PfeI GAWTC 3 cut(s) 322, 502, 864
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 5 cut(s) 310, 313, 613, 772, 877
PleI GAGTC 2 cut(s) 505, 1036
PluTI GGCGCC 1 cut(s) 420
PpsI GAGTC 2 cut(s) 505, 1036
PshAI GACNNNNGTC 1 cut(s) 647
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 542
PspFI CCCAGC 1 cut(s) 949
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 4 cut(s) 28, 154, 418, 831
PspPI GGNCC 3 cut(s) 27, 464, 830
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 3 cut(s) 518, 546, 932
RsaI GTAC 2 cut(s) 154, 564
RsaNI GTAC 2 cut(s) 153, 563
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 257
SalI GTCGAC 1 cut(s) 1030
SaqAI TTAA 1 cut(s) 852
SatI GCNGC 5 cut(s) 309, 312, 612, 771, 876
Sau3AI GATC 4 cut(s) 518, 546, 932, 942
Sau96I GGNCC 3 cut(s) 27, 464, 830
SchI GAGTC 2 cut(s) 505, 1036
ScrFI CCNGG 2 cut(s) 544, 632
SduI GDGCHC 2 cut(s) 36, 257
SetI ASST 7 cut(s) 257, 378, 545, 559, 741, 911, 1002
SfaNI GCATC 1 cut(s) 804
SfoI GGCGCC 1 cut(s) 418
SgrAI CRCCGGYG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 7 cut(s) 227, 264, 333, 357, 478, 675, 699
SsiI CCGC 4 cut(s) 104, 308, 770, 1046
SspDI GGCGCC 1 cut(s) 416
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 542, 630
StyI CCWWGG 4 cut(s) 45, 99, 411, 898
TaaI ACNGT 6 cut(s) 293, 534, 619, 688, 964, 1029
TaqI TCGA 3 cut(s) 509, 590, 1031
TasI AATT 7 cut(s) 227, 264, 333, 357, 478, 675, 699
TauI GCSGC 2 cut(s) 311, 773
TfiI GAWTC 3 cut(s) 322, 502, 864
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 4 cut(s) 46, 435, 622, 805
TseFI GTSAC 2 cut(s) 448, 964
TseI GCWGC 3 cut(s) 311, 611, 875
Tsp45I GTSAC 2 cut(s) 448, 964
TspDTI ATGAA 3 cut(s) 118, 166, 794
TspRI CASTG 4 cut(s) 46, 435, 622, 805
XapI RAATTY 2 cut(s) 264, 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmiI GTMKAC 2 cut(s) 135, 1031
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.