Rh2BG634900

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000534
Physical Location & Seq
Reverse (-)
85627136 .. 85628912
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG634900.1

Sequence Viewer

Length: 1155 bp
ATGCCTTTTCCTCTGTTTCATAAGCTTGTCAATGATCAAGAGGTGTTATATAAGTACATTGAGAAAGGGAGAGGACTTGAAAAAAGCATAGATATGGCGCCTTGTACATGGGGTAATGTGCTGCCTTTTGCAGCTATGGTAATGGTGCAGTTCACAGATATAGGTGCAGTAACTATAAGCAAAGCAGCCATGTCGAAAGGAATGAGCAGTTATGTTTTAGTTGTTTACTCTACTGGGCTTGCTACCGTCTTTCTCCTTCCTTGTTTTATCTTACAAAAGAAGATTTCACTTACTTTTTCACTCCTTGGTGGAACATTCCTTCTTGGCCTATTTGGGAGTGCAGGTTTGTTATTGATATATAATGGCATCAACTACAGCTCACCAACACTTGCTTCAGCAATGGGAAACCTTATCCCAATCTTTACATTCATACTGGCGATCATTTTCAGGATGGAAAAACTGGATTTAAGGAGGTCGAGCTGTCAAGCCAAAGTGTTGGGGACTATTGTATCAGTATCTGGAGCATTTGTAGTAATTCTATACAAGGGATCAGTAATCTTTTCACCGTCCAACTCTCCTGACCAGAACGTCATGATGATCTTGCAGCAGTCAAAGTGGGTCTTTGGAGGTCTTATGCTTGCAATGGCGAGCGTTTTGAAGGCATCATGGAATATTCTTCAGACATCAATTGTGAAGAACTGTCCATCAATGATTACCATAGTCTTCTTCTACACCTTCTTTGTGGCAATTGAATCCACAGTGTTCTCTCTATTTTTGGTAAGCAATCCAAGTGCTTGGGTACTACGGCCTGACATTGAGATGATCTCCATTGTCTTCTCAGCTGTATTTGGGAGTGTATTCCATATTGGTGTTGAAACCTGGTGCTTGCACCAAAAGGGACCTATCTTTGTGGCCATGTTTAGGCCCTTGGCAGTTGCCATTGCTGCAGTCATGGTAGTCATCTTCCTCGGCGACGCACTTCACCTTGGCAGTGTGATTGGGTCTATCATTATTGCAATTGGGTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGAGCACCAATGGTACAGAGAATGAAGTCCAAAGCTTGGCATCATCCACTCAAAAGACCCCTCTATTGCAATGCAGAACCTCAGGAGAAGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

384

Amino Acids

41.89

Weight (kDa)

8.95

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 58 - 179 1e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
Acc36I ACCTGC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 1093
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 912
AcuI CTGAAG 2 cut(s) 378, 662
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 4 cut(s) 56, 106, 801, 1072
AfiI CCNNNNNNNGG 2 cut(s) 921, 1093
AgsI TTSAA 4 cut(s) 80, 658, 752, 875
AjnI CCWGG 1 cut(s) 878
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 6 cut(s) 25, 134, 378, 480, 842, 1092
AluI AGCT 6 cut(s) 25, 134, 378, 480, 842, 1092
Alw21I GWGCWC 1 cut(s) 1064
AlwI GGATC 1 cut(s) 556
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 4 cut(s) 325, 806, 912, 923
ApeKI GCWGC 5 cut(s) 121, 131, 185, 604, 944
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 899, 924
AsuHPI GGTGA 3 cut(s) 372, 555, 974
AvaII GGWCC 1 cut(s) 899
AxyI CCTNAGG 1 cut(s) 1138
BaeGI GKGCMC 1 cut(s) 1045
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BalI TGGCCA 1 cut(s) 914
BanI GGYRCC 1 cut(s) 97
BbsI GAAGAC 2 cut(s) 715, 826
Bbv12I GWGCWC 1 cut(s) 1064
BbvI GCAGC 5 cut(s) 108, 143, 197, 616, 931
BccI CCATC 2 cut(s) 445, 712
BceAI ACGGC 1 cut(s) 821
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BciT130I CCWGG 1 cut(s) 880
BclI TGATCA 1 cut(s) 34
BfmI CTRYAG 2 cut(s) 373, 945
BfoI RGCGCY 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 5 cut(s) 122, 132, 186, 605, 945
BlsI GCNGC 5 cut(s) 123, 133, 187, 606, 946
Bme1390I CCNGG 1 cut(s) 880
Bme18I GGWCC 1 cut(s) 899
BmgT120I GGNCC 2 cut(s) 899, 924
BmiI GGNNCC 2 cut(s) 99, 900
BmrFI CCNGG 1 cut(s) 880
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 3 cut(s) 375, 671, 1106
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 715, 826
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 4 cut(s) 304, 927, 967, 985
BsaXI ACNNNNNCTCC 5 cut(s) 328, 358, 513, 543, 1134
Bsc4I CCNNNNNNNGG 2 cut(s) 921, 1093
Bse1I ACTGG 3 cut(s) 238, 438, 465
Bse21I CCTNAGG 1 cut(s) 1138
Bse3DI GCAATG 4 cut(s) 405, 648, 939, 1133
BseBI CCWGG 1 cut(s) 880
BseDI CCNNGG 4 cut(s) 304, 927, 967, 985
BseGI GGATG 2 cut(s) 456, 1100
BseLI CCNNNNNNNGG 2 cut(s) 921, 1093
BseMI GCAATG 4 cut(s) 405, 648, 939, 1133
BseMII CTCAG 2 cut(s) 852, 1152
BseNI ACTGG 3 cut(s) 238, 438, 465
BseSI GKGCMC 1 cut(s) 1045
BseXI GCAGC 5 cut(s) 108, 143, 197, 616, 931
BsgI GTGCAG 3 cut(s) 167, 186, 360
BshFI GGCC 4 cut(s) 327, 808, 914, 925
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 1064
BslFI GGGAC 2 cut(s) 514, 912
BslI CCNNNNNNNGG 2 cut(s) 921, 1093
BsmFI GGGAC 2 cut(s) 514, 912
BsnI GGCC 4 cut(s) 327, 808, 914, 925
Bsp1286I GDGCHC 2 cut(s) 1045, 1064
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 5 cut(s) 34, 438, 548, 597, 822
BspANI GGCC 4 cut(s) 327, 808, 914, 925
BspCNI CTCAG 2 cut(s) 851, 1151
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 99, 900
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 97
BsrDI GCAATG 4 cut(s) 405, 648, 939, 1133
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 3 cut(s) 238, 438, 465
BssECI CCNNGG 4 cut(s) 304, 927, 967, 985
BssMI GATC 5 cut(s) 34, 438, 548, 597, 822
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 3 cut(s) 304, 927, 985
Bst2UI CCWGG 1 cut(s) 880
Bst4CI ACNGT 4 cut(s) 247, 567, 701, 760
BstACI GRCGYC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 104
BstC8I GCNNGC 4 cut(s) 240, 639, 649, 887
BstDEI CTNAG 2 cut(s) 838, 1138
BstF5I GGATG 2 cut(s) 456, 1100
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 5 cut(s) 37, 441, 551, 600, 825
BstMBI GATC 5 cut(s) 34, 438, 548, 597, 822
BstMWI GCNNNNNNNGC 1 cut(s) 944
BstNI CCWGG 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 878
BstSFI CTRYAG 2 cut(s) 373, 945
BstSLI GKGCMC 1 cut(s) 1045
BstV1I GCAGC 5 cut(s) 108, 143, 197, 616, 931
BstV2I GAAGAC 2 cut(s) 715, 826
BstXI CCANNNNNNTGG 2 cut(s) 496, 795
Bsu36I CCTNAGG 1 cut(s) 1138
BsuRI GGCC 4 cut(s) 327, 808, 914, 925
BtsCI GGATG 2 cut(s) 456, 1100
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 2 cut(s) 765, 997
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 4 cut(s) 240, 639, 649, 887
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 1 cut(s) 591
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 899, 924
CseI GACGC 1 cut(s) 983
CsiI ACCWGGT 1 cut(s) 878
Csp6I GTAC 4 cut(s) 55, 105, 800, 1071
CviAII CATG 6 cut(s) 108, 190, 592, 666, 916, 952
CviQI GTAC 4 cut(s) 55, 105, 800, 1071
DdeI CTNAG 2 cut(s) 838, 1138
DinI GGCGCC 1 cut(s) 99
DpnI GATC 5 cut(s) 36, 440, 550, 599, 824
DpnII GATC 5 cut(s) 34, 438, 548, 597, 822
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 912
Eco130I CCWWGG 3 cut(s) 304, 927, 985
Eco47I GGWCC 1 cut(s) 899
Eco57I CTGAAG 2 cut(s) 378, 662
Eco81I CCTNAGG 1 cut(s) 1138
EcoO109I RGGNCCY 2 cut(s) 899, 924
EcoRII CCWGG 1 cut(s) 878
EcoT14I CCWWGG 3 cut(s) 304, 927, 985
EgeI GGCGCC 1 cut(s) 99
EheI GGCGCC 1 cut(s) 99
ErhI CCWWGG 3 cut(s) 304, 927, 985
FaeI CATG 6 cut(s) 111, 193, 595, 669, 919, 955
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 2 cut(s) 514, 912
FatI CATG 6 cut(s) 107, 189, 591, 665, 915, 951
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 5 cut(s) 122, 132, 186, 605, 945
FokI GGATG 2 cut(s) 463, 1087
Fsp4HI GCNGC 5 cut(s) 122, 132, 186, 605, 945
GlaI GCGC 1 cut(s) 99
GluI GCNGC 5 cut(s) 122, 132, 186, 605, 945
GsuI CTGGAG 1 cut(s) 540
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 4 cut(s) 327, 808, 914, 925
HgaI GACGC 1 cut(s) 983
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 6 cut(s) 111, 193, 595, 669, 919, 955
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 2 cut(s) 23, 1090
HinfI GANTC 1 cut(s) 752
HphI GGTGA 3 cut(s) 372, 555, 974
Hpy166II GTNNAC 2 cut(s) 153, 226
Hpy188I TCNGA 1 cut(s) 681
Hpy188III TCNNGA 6 cut(s) 38, 448, 519, 578, 592, 1140
Hpy8I GTNNAC 2 cut(s) 153, 226
Hpy99I CGWCG 1 cut(s) 977
HpyAV CCTTC 4 cut(s) 266, 329, 652, 745
HpyCH4III ACNGT 4 cut(s) 247, 567, 701, 760
HpyCH4IV ACGT 1 cut(s) 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 944
HpyF3I CTNAG 2 cut(s) 838, 1138
HpySE526I ACGT 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 6 cut(s) 111, 193, 595, 669, 919, 955
HspAI GCGC 1 cut(s) 98
KasI GGCGCC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 5 cut(s) 34, 438, 548, 597, 822
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 5 cut(s) 108, 143, 197, 616, 931
LweI GCATC 3 cut(s) 375, 671, 1106
MabI ACCWGGT 1 cut(s) 878
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 169
MalI GATC 5 cut(s) 36, 440, 550, 599, 824
MboI GATC 5 cut(s) 34, 438, 548, 597, 822
MboII GAAGA 7 cut(s) 292, 668, 706, 715, 718, 826, 955
MfeI CAATTG 3 cut(s) 687, 747, 1017
MhlI GDGCHC 2 cut(s) 1045, 1064
MlsI TGGCCA 1 cut(s) 914
MluCI AATT 4 cut(s) 534, 687, 747, 1017
MluNI TGGCCA 1 cut(s) 914
Mly113I GGCGCC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 8 cut(s) 21, 34, 65, 465, 620, 977, 1128, 1147
Mox20I TGGCCA 1 cut(s) 914
MscI TGGCCA 1 cut(s) 914
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 3 cut(s) 92, 818, 867
Msp20I TGGCCA 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 880
MunI CAATTG 3 cut(s) 687, 747, 1017
MvaI CCWGG 1 cut(s) 880
MwoI GCNNNNNNNGC 1 cut(s) 944
NarI GGCGCC 1 cut(s) 98
NdeII GATC 5 cut(s) 34, 438, 548, 597, 822
NlaIII CATG 6 cut(s) 111, 193, 595, 669, 919, 955
NlaIV GGNNCC 2 cut(s) 99, 900
NmeAIII GCCGAG 1 cut(s) 948
PagI TCATGA 1 cut(s) 591
PfeI GAWTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 1093
PkrI GCNGC 5 cut(s) 123, 133, 187, 606, 946
PluTI GGCGCC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 899
Psp5II RGGWCCY 1 cut(s) 899
Psp6I CCWGG 1 cut(s) 878
PspGI CCWGG 1 cut(s) 878
PspN4I GGNNCC 2 cut(s) 99, 900
PspPI GGNCC 2 cut(s) 899, 924
PspPPI RGGWCCY 1 cut(s) 899
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 4 cut(s) 56, 106, 801, 1072
RsaNI GTAC 4 cut(s) 55, 105, 800, 1071
RseI CAYNNNNRTG 3 cut(s) 92, 818, 867
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 5 cut(s) 122, 132, 186, 605, 945
Sau3AI GATC 5 cut(s) 34, 438, 548, 597, 822
Sau96I GGNCC 2 cut(s) 899, 924
ScrFI CCNGG 1 cut(s) 880
SduI GDGCHC 2 cut(s) 1045, 1064
SexAI ACCWGGT 1 cut(s) 878
SfaNI GCATC 3 cut(s) 375, 671, 1106
SfcI CTRYAG 2 cut(s) 373, 945
SfoI GGCGCC 1 cut(s) 99
SinI GGWCC 1 cut(s) 899
SmiMI CAYNNNNRTG 3 cut(s) 92, 818, 867
Sse9I AATT 4 cut(s) 534, 687, 747, 1017
SspDI GGCGCC 1 cut(s) 97
SspI AATATT 1 cut(s) 673
StyD4I CCNGG 1 cut(s) 878
StyI CCWWGG 3 cut(s) 304, 927, 985
TaaI ACNGT 4 cut(s) 247, 567, 701, 760
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 194, 476
TasI AATT 4 cut(s) 534, 687, 747, 1017
TatI WGTACW 2 cut(s) 54, 104
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 2 cut(s) 765, 997
TseI GCWGC 5 cut(s) 121, 131, 185, 604, 944
TspDTI ATGAA 3 cut(s) 8, 418, 1095
TspRI CASTG 2 cut(s) 765, 997
Van91I CCANNNNNTGG 1 cut(s) 1093
VpaK11BI GGWCC 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.