Rmu_co8418849.1_g000001

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8418849.1
OG0000534
Physical Location & Seq
Forward (+)
1 .. 1194
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8418849.1_g000001.1.cds

Sequence Viewer

Length: 749 bp
ccatggttacagttcagtttaccgatgtggggatatcaactataagcaaagcagctatgtcaagaggaatgagcagttatgttttgattgtctactctaatgcccttgctaccctccttctccttccctctttcattttacaaaagaagcaggtttctcttaccttttcgttcctttctggactcttcctcctaggcctaatcgggagttcaagtatattattggcatataatggcatcaactacagctcaccaacactttcttcagctatggcaaatcttataccaatctacacgttcatgttggcaatcattttcaggctggaaaaactagatttgaggagatcaagcagtcaagctaaagtgttgggcactatagtatcagtctctggagcatttataataatcctatataagggcttagtaatcttaaagccttcatcgccatccaacttcttcatgatctcacatcagtcaaactcaaggtgggtctttggaggtcttatgctggcaatgtcctgccttttgtctgcaatttggaacattgttcaggcatccattgttaaaaactgtccatcaaaggtgacagtggtcttcttctacacgttctttatgacaatccaatgcacaatattttctctgattgtggaaaggaatccgaatacttgggttataagacctggcattgagatgatctccattgtctgctcagtgagtagtactatatataagcgtagactatgttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

248

Amino Acids

27.39

Weight (kDa)

9.91

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 400, 673
Acc36I ACCTGC 1 cut(s) 141
AccI GTMKAC 2 cut(s) 92, 735
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 2 cut(s) 29, 414
AflIII ACRYGT 2 cut(s) 293, 602
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 678
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 4 cut(s) 55, 248, 268, 358
AluI AGCT 4 cut(s) 55, 248, 268, 358
Alw26I GTCTC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 52
AspA2I CCTAGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 242, 594
AvrII CCTAGG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 373
BaeI ACNNNNGTAYC 2 cut(s) 362, 395
BbsI GAAGAC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 453, 582
BciT130I CCWGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 193, 331
BfmI CTRYAG 2 cut(s) 243, 374
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 1 cut(s) 53
BlnI CCTAGG 1 cut(s) 192
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 720
Bme1390I CCNGG 1 cut(s) 680
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 2 cut(s) 245, 562
BoxI GACNNNNGTC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 585
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 2, 192
BsaXI ACNNNNNCTCC 4 cut(s) 173, 198, 203, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 414
Bse3DI GCAATG 1 cut(s) 518
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 2 cut(s) 2, 192
BseGI GGATG 2 cut(s) 445, 553
BseLI CCNNNNNNNGG 2 cut(s) 29, 414
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 1 cut(s) 722
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 29, 414
BsmAI GTCTC 1 cut(s) 390
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 3 cut(s) 343, 461, 692
Bsp19I CCATGG 1 cut(s) 2
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 721
BspHI TCATGA 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 2, 192
BssMI GATC 3 cut(s) 343, 461, 692
BssT1I CCWWGG 2 cut(s) 2, 192
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 3 cut(s) 12, 571, 588
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 2 cut(s) 420, 708
BstDSI CCRYGG 1 cut(s) 2
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 2 cut(s) 445, 553
BstKTI GATC 3 cut(s) 346, 464, 695
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 3 cut(s) 343, 461, 692
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstNI CCWGG 1 cut(s) 680
BstPAI GACNNNNGTC 1 cut(s) 589
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 2 cut(s) 243, 374
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 585
BsuRI GGCC 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 2
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 445, 553
BtsIMutI CAGTG 2 cut(s) 593, 716
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 509
CaiI CAGNNNCTG 1 cut(s) 388
CciI TCATGA 1 cut(s) 458
Csp6I GTAC 1 cut(s) 719
CviAII CATG 3 cut(s) 3, 300, 459
CviJI RGCY 8 cut(s) 55, 197, 248, 268, 321, 358, 419, 435
CviKI_1 RGCY 8 cut(s) 55, 197, 248, 268, 321, 358, 419, 435
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 2 cut(s) 420, 708
DpnI GATC 3 cut(s) 345, 463, 694
DpnII GATC 3 cut(s) 343, 461, 692
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 2, 192
Eco147I AGGCCT 1 cut(s) 197
Eco32I GATATC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 248
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 678
EcoRV GATATC 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 2, 192
ErhI CCWWGG 2 cut(s) 2, 192
FaeI CATG 3 cut(s) 6, 303, 462
FatI CATG 3 cut(s) 2, 299, 458
FblI GTMKAC 2 cut(s) 92, 735
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 2 cut(s) 432, 540
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 193, 331
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 3 cut(s) 6, 303, 462
HinfI GANTC 2 cut(s) 182, 654
HphI GGTGA 2 cut(s) 242, 594
Hpy166II GTNNAC 3 cut(s) 20, 93, 736
Hpy188I TCNGA 2 cut(s) 641, 659
Hpy188III TCNNGA 5 cut(s) 62, 179, 204, 389, 459
Hpy8I GTNNAC 3 cut(s) 20, 93, 736
HpyAV CCTTC 3 cut(s) 127, 133, 446
HpyCH4III ACNGT 3 cut(s) 12, 571, 588
HpyCH4IV ACGT 2 cut(s) 295, 604
HpyCH4V TGCA 2 cut(s) 532, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 2 cut(s) 420, 708
HpySE526I ACGT 2 cut(s) 295, 604
Hsp92II CATG 3 cut(s) 6, 303, 462
Kzo9I GATC 3 cut(s) 343, 461, 692
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 245, 562
MaeI CTAG 2 cut(s) 193, 331
MaeII ACGT 2 cut(s) 295, 604
MaeIII GTNAC 3 cut(s) 6, 582, 742
MalI GATC 3 cut(s) 345, 463, 694
MboI GATC 3 cut(s) 343, 461, 692
MboII GAAGA 5 cut(s) 177, 254, 447, 585, 588
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 1 cut(s) 533
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 6 cut(s) 58, 124, 138, 199, 332, 490
MseI TTAA 2 cut(s) 430, 563
MslI CAYNNNNRTG 2 cut(s) 298, 688
MspR9I CCNGG 1 cut(s) 680
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 1 cut(s) 441
NcoI CCATGG 1 cut(s) 2
NdeII GATC 3 cut(s) 343, 461, 692
NlaIII CATG 3 cut(s) 6, 303, 462
NmuCI GTSAC 1 cut(s) 582
PagI TCATGA 1 cut(s) 458
PceI AGGCCT 1 cut(s) 197
PfeI GAWTC 1 cut(s) 654
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 589
PsiI TTATAA 2 cut(s) 400, 673
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PstNI CAGNNNCTG 1 cut(s) 388
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
RseI CAYNNNNRTG 2 cut(s) 298, 688
SaqAI TTAA 2 cut(s) 430, 563
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 343, 461, 692
ScaI AGTACT 1 cut(s) 720
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 2 cut(s) 245, 562
SfcI CTRYAG 2 cut(s) 243, 374
SmiMI CAYNNNNRTG 2 cut(s) 298, 688
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
Sse9I AATT 1 cut(s) 533
SseBI AGGCCT 1 cut(s) 197
SspI AATATT 1 cut(s) 632
SspMI CTAG 2 cut(s) 193, 331
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 2 cut(s) 2, 192
TaaI ACNGT 3 cut(s) 12, 571, 588
TaiI ACGT 2 cut(s) 298, 607
TasI AATT 1 cut(s) 533
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 1 cut(s) 654
Tru1I TTAA 2 cut(s) 430, 563
Tru9I TTAA 2 cut(s) 430, 563
TscAI CASTG 2 cut(s) 593, 716
TseFI GTSAC 1 cut(s) 582
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 4 cut(s) 123, 288, 428, 447
TspRI CASTG 2 cut(s) 593, 716
XagI CCTNNNNNAGG 1 cut(s) 412
XmaJI CCTAGG 1 cut(s) 192
XmiI GTMKAC 2 cut(s) 92, 735
XspI CTAG 2 cut(s) 193, 331
ZrmI AGTACT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.