Rw0G017070

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00753
OG0000534
Physical Location & Seq
Forward (+)
15847 .. 17503
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017070.1

Sequence Viewer

Length: 1065 bp
ATGGTGTCTTGTACATGGAGTGATGTGCTACCTTTTGCAGCTATGGTAATGGTGCAGTTCACAGACATAGGTGCAGCAACTATAAGCAAAGCAGCCATGACGAAAGGAGTGAGCAGTTATGTTTTAGTTGCTTACTCCAATGCGCTTGGTACCGTCTTTCTTCTTCCTTGTTTCATCTTACAAAATAAGGTTTCTCTTACCTTTTCACTCCTTGGTGGACAATTCCTTCTGGGCATGATTGGGAGTTCAAGCTTGTTATTGGCATATAGTGGCATCAACTACAGCTCACCAACACTTGCTTCAGCTATGGCAAATCTCATACCAATCTTTACATTCATACTGGCAGTCATTTTCCGGATGGAAAAGCTAGATTTGAGGAGGTCAAGCTGCCAAGCCAAAGTTTTAGGGACTATAGTATCAGTATCTGGAGCATTTGTAGTAATTCTATACAAGGGATCAGTGATCTTTTCACCATCAAACTCTCCTGACCAGAACTTCATGATGATCTCACAGCAGTCAAAGTGGGTCTTTGGAGGTCTTATGCTGGCAATGGTGTGCCTTCTGAATGCAACATGGGGTATTGTTCAGACATCATTTGTTCAGAACTGTCCATCAATGATTACCATACTCTTCTTCTACAACTTCTTTGTCACAATCCAGTGCACAATATTCTCTCTAATTATGGAAAGGACTTGGAATGCTTGGGTAATAAGGCCTGACATTGAGATGATCTCCATTGTCTTCTCAGCTTTATTTGGGAGTGTGTTCCATGTTGGTGTTCAAACCTGGTGCTTGCACCAAAAGGGACCTATCTTTGTAGCCATGTTTAGGCCCCTGGGAGTTGCCATTGCAGCAGTCATGGTAGTGATCTTCCTCGGCGATGCACTTCATCTTGGAAGTGTCATTGGATCCATCATTATTGCAGTTGGCTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGAGCACTACTCTTATGGAGAATGAAGTCCAAAGCTTGGCACCATCATCCACCCAAAAGACCCCTCTTTTGCAATGCAGAACCTCAGGAGAAGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

354

Amino Acids

38.6

Weight (kDa)

8.61

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 27 - 148 8.1e-10 EamA-like transporter family
EamA PF00892 178 - 314 2.9e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 2 cut(s) 149, 1003
AccB7I CCANNNNNTGG 1 cut(s) 1000
AccIII TCCGGA 1 cut(s) 354
AclWI GGATC 3 cut(s) 463, 903, 916
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 13, 151
AfiI CCNNNNNNNGG 2 cut(s) 828, 1000
AgsI TTSAA 2 cut(s) 249, 782
AjnI CCWGG 2 cut(s) 785, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AluBI AGCT 8 cut(s) 41, 252, 285, 305, 367, 387, 749, 999
AluI AGCT 8 cut(s) 41, 252, 285, 305, 367, 387, 749, 999
Alw21I GWGCWC 2 cut(s) 665, 971
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 3 cut(s) 463, 903, 916
AlwNI CAGNNNCTG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 2 cut(s) 713, 830
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 5 cut(s) 38, 74, 92, 387, 851
ArsI GACNNNNNNTTYG 2 cut(s) 1015, 1047
Asp718I GGTACC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 806, 831
AsuHPI GGTGA 2 cut(s) 279, 462
AvaII GGWCC 1 cut(s) 806
AxyI CCTNAGG 1 cut(s) 1048
BaeGI GKGCMC 2 cut(s) 665, 952
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BamHI GGATCC 1 cut(s) 908
BanI GGYRCC 2 cut(s) 149, 1003
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 2 cut(s) 665, 971
BbvI GCAGC 5 cut(s) 50, 86, 104, 374, 863
BccI CCATC 5 cut(s) 352, 481, 619, 920, 1015
BciT130I CCWGG 2 cut(s) 787, 836
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 2 cut(s) 280, 411
BisI GCNGC 5 cut(s) 39, 75, 93, 388, 852
BlsI GCNGC 5 cut(s) 40, 76, 94, 389, 853
Bme1390I CCNGG 2 cut(s) 787, 836
Bme18I GGWCC 1 cut(s) 806
BmgT120I GGNCC 2 cut(s) 806, 831
BmiI GGNNCC 5 cut(s) 151, 807, 833, 910, 1005
BmrFI CCNGG 2 cut(s) 787, 836
BmsI GCATC 2 cut(s) 282, 871
BpiI GAAGAC 1 cut(s) 733
BplI GAGNNNNNCTC 4 cut(s) 716, 748, 958, 990
BpmI CTGGAG 1 cut(s) 447
BsaJI CCNNGG 4 cut(s) 211, 834, 835, 874
BsaWI WCCGGW 1 cut(s) 354
BsaXI ACNNNNNCTCC 3 cut(s) 420, 450, 1044
Bsc4I CCNNNNNNNGG 2 cut(s) 828, 1000
Bse1I ACTGG 2 cut(s) 345, 658
Bse21I CCTNAGG 1 cut(s) 1048
Bse3DI GCAATG 3 cut(s) 555, 846, 1043
BseAI TCCGGA 1 cut(s) 354
BseBI CCWGG 2 cut(s) 787, 836
BseDI CCNNGG 4 cut(s) 211, 834, 835, 874
BseGI GGATG 2 cut(s) 363, 1010
BseLI CCNNNNNNNGG 2 cut(s) 828, 1000
BseMI GCAATG 3 cut(s) 555, 846, 1043
BseMII CTCAG 2 cut(s) 759, 1062
BseNI ACTGG 2 cut(s) 345, 658
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 2 cut(s) 665, 952
BseXI GCAGC 5 cut(s) 50, 86, 104, 374, 863
BsgI GTGCAG 2 cut(s) 74, 93
BshFI GGCC 2 cut(s) 715, 832
BshNI GGYRCC 2 cut(s) 149, 1003
BsiHKAI GWGCWC 2 cut(s) 665, 971
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 2 cut(s) 421, 819
BslI CCNNNNNNNGG 2 cut(s) 828, 1000
BsmFI GGGAC 2 cut(s) 421, 819
BsmI GAATGC 2 cut(s) 571, 703
BsnI GGCC 2 cut(s) 715, 832
Bsp1286I GDGCHC 3 cut(s) 665, 952, 971
Bsp13I TCCGGA 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 11
Bsp143I GATC 6 cut(s) 455, 462, 504, 729, 867, 908
BspANI GGCC 2 cut(s) 715, 832
BspCNI CTCAG 2 cut(s) 758, 1061
BspEI TCCGGA 1 cut(s) 354
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 5 cut(s) 151, 807, 833, 910, 1005
BspPI GGATC 3 cut(s) 463, 903, 916
BspT107I GGYRCC 2 cut(s) 149, 1003
BsrDI GCAATG 3 cut(s) 555, 846, 1043
BsrGI TGTACA 1 cut(s) 11
BsrI ACTGG 2 cut(s) 345, 658
BssECI CCNNGG 4 cut(s) 211, 834, 835, 874
BssMI GATC 6 cut(s) 455, 462, 504, 729, 867, 908
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 787, 836
Bst4CI ACNGT 2 cut(s) 154, 608
Bst6I CTCTTC 1 cut(s) 635
BstAUI TGTACA 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 546, 794
BstDEI CTNAG 2 cut(s) 745, 1048
BstF5I GGATG 2 cut(s) 363, 1010
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 6 cut(s) 458, 465, 507, 732, 870, 911
BstMBI GATC 6 cut(s) 455, 462, 504, 729, 867, 908
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNI CCWGG 2 cut(s) 787, 836
BstSCI CCNGG 2 cut(s) 785, 834
BstSFI CTRYAG 2 cut(s) 280, 411
BstSLI GKGCMC 2 cut(s) 665, 952
BstV1I GCAGC 5 cut(s) 50, 86, 104, 374, 863
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 908
BstYI RGATCY 1 cut(s) 908
Bsu36I CCTNAGG 1 cut(s) 1048
BsuRI GGCC 2 cut(s) 715, 832
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 2 cut(s) 363, 1010
BtsIMutI CAGTG 2 cut(s) 465, 665
Cac8I GCNNGC 2 cut(s) 546, 794
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 1 cut(s) 498
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 806, 831
CsiI ACCWGGT 1 cut(s) 785
Csp6I GTAC 2 cut(s) 12, 150
CviAII CATG 8 cut(s) 15, 97, 235, 499, 573, 770, 823, 859
CviQI GTAC 2 cut(s) 12, 150
DdeI CTNAG 2 cut(s) 745, 1048
DpnI GATC 6 cut(s) 457, 464, 506, 731, 869, 910
DpnII GATC 6 cut(s) 455, 462, 504, 729, 867, 908
Eam1104I CTCTTC 1 cut(s) 635
EarI CTCTTC 1 cut(s) 635
Eco130I CCWWGG 1 cut(s) 211
Eco147I AGGCCT 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 806
Eco57I CTGAAG 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 1048
EcoO109I RGGNCCY 2 cut(s) 806, 831
EcoRII CCWGG 2 cut(s) 785, 834
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 8 cut(s) 18, 100, 238, 502, 576, 773, 826, 862
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 2 cut(s) 421, 819
FatI CATG 8 cut(s) 14, 96, 234, 498, 572, 769, 822, 858
Fnu4HI GCNGC 5 cut(s) 39, 75, 93, 388, 852
FokI GGATG 2 cut(s) 370, 997
Fsp4HI GCNGC 5 cut(s) 39, 75, 93, 388, 852
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 144
GluI GCNGC 5 cut(s) 39, 75, 93, 388, 852
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 715, 832
HapII CCGG 1 cut(s) 355
HhaI GCGC 1 cut(s) 145
Hin1II CATG 8 cut(s) 18, 100, 238, 502, 576, 773, 826, 862
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 2 cut(s) 250, 997
HpaII CCGG 1 cut(s) 355
HphI GGTGA 2 cut(s) 279, 462
Hpy166II GTNNAC 3 cut(s) 60, 218, 663
Hpy188I TCNGA 3 cut(s) 564, 588, 603
Hpy188III TCNNGA 5 cut(s) 355, 426, 485, 499, 1050
Hpy8I GTNNAC 3 cut(s) 60, 218, 663
HpyAV CCTTC 2 cut(s) 236, 569
HpyCH4III ACNGT 2 cut(s) 154, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 2 cut(s) 745, 1048
Hsp92II CATG 8 cut(s) 18, 100, 238, 502, 576, 773, 826, 862
HspAI GCGC 1 cut(s) 143
Kpn2I TCCGGA 1 cut(s) 354
KpnI GGTACC 1 cut(s) 153
Kzo9I GATC 6 cut(s) 455, 462, 504, 729, 867, 908
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 5 cut(s) 50, 86, 104, 374, 863
LweI GCATC 2 cut(s) 282, 871
MabI ACCWGGT 1 cut(s) 785
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 649
MalI GATC 6 cut(s) 457, 464, 506, 731, 869, 910
MboI GATC 6 cut(s) 455, 462, 504, 729, 867, 908
MboII GAAGA 6 cut(s) 152, 155, 622, 625, 733, 862
MflI RGATCY 1 cut(s) 908
MhlI GDGCHC 3 cut(s) 665, 952, 971
MluCI AATT 3 cut(s) 221, 441, 678
MnlI CCTC 6 cut(s) 369, 372, 527, 884, 1038, 1057
MroI TCCGGA 1 cut(s) 354
MslI CAYNNNNRTG 3 cut(s) 725, 774, 863
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 2 cut(s) 787, 836
Mva1269I GAATGC 2 cut(s) 571, 703
MvaI CCWGG 2 cut(s) 787, 836
MwoI GCNNNNNNNGC 1 cut(s) 851
NdeII GATC 6 cut(s) 455, 462, 504, 729, 867, 908
NlaIII CATG 8 cut(s) 18, 100, 238, 502, 576, 773, 826, 862
NlaIV GGNNCC 5 cut(s) 151, 807, 833, 910, 1005
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 1 cut(s) 649
PagI TCATGA 1 cut(s) 498
PasI CCCWGGG 1 cut(s) 835
PceI AGGCCT 1 cut(s) 715
PctI GAATGC 2 cut(s) 571, 703
PflMI CCANNNNNTGG 1 cut(s) 1000
PkrI GCNGC 5 cut(s) 40, 76, 94, 389, 853
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 785, 834
PspGI CCWGG 2 cut(s) 785, 834
PspN4I GGNNCC 5 cut(s) 151, 807, 833, 910, 1005
PspPI GGNCC 2 cut(s) 806, 831
PspPPI RGGWCCY 1 cut(s) 806
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 908
RsaI GTAC 2 cut(s) 13, 151
RsaNI GTAC 2 cut(s) 12, 150
RseI CAYNNNNRTG 3 cut(s) 725, 774, 863
SatI GCNGC 5 cut(s) 39, 75, 93, 388, 852
Sau3AI GATC 6 cut(s) 455, 462, 504, 729, 867, 908
Sau96I GGNCC 2 cut(s) 806, 831
ScrFI CCNGG 2 cut(s) 787, 836
SduI GDGCHC 3 cut(s) 665, 952, 971
SexAI ACCWGGT 1 cut(s) 785
SfaNI GCATC 2 cut(s) 282, 871
SfcI CTRYAG 2 cut(s) 280, 411
SinI GGWCC 1 cut(s) 806
SmiMI CAYNNNNRTG 3 cut(s) 725, 774, 863
Sse9I AATT 3 cut(s) 221, 441, 678
SseBI AGGCCT 1 cut(s) 715
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 368
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 2 cut(s) 785, 834
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 154, 608
TasI AATT 3 cut(s) 221, 441, 678
TatI WGTACW 1 cut(s) 11
TscAI CASTG 2 cut(s) 465, 665
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 5 cut(s) 38, 74, 92, 387, 851
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 5 cut(s) 163, 325, 487, 878, 1002
TspRI CASTG 2 cut(s) 465, 665
Van91I CCANNNNNTGG 1 cut(s) 1000
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 806
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.