pycom111g02930

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000534
Physical Location & Seq
Forward (+)
1756519 .. 1757723
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02930.1

Sequence Viewer

Length: 816 bp
ATGCTATTGGCGTATAGTGGCATCTACTACAGCTCCCCAACACTTTCATCAGCAATATCAAATCTCTCACCAATTTTTACCTTCATACTGGCAATCATTTTTAGGATGGAAACACTGGATTTAAGGAGAGCAAGCAGTCAAGGAAAATTGTTGGGCACTCTAGTGTCGGTATCTGGGGCGTTTGTCGTTGTCCTATACAAGGGATCGATAATCCTAAAGTTAAAGGCTGTATCAACCCCCGACTTCCTTCACCCGCACTTGATCATCTCAGAACAGACAATGTGGGTCTGTGGAGGTCTTGTACTTACAATGGGTTGCTTCTTTGGTGCATTATGGAACATCACTCTGACATCCATTGTTACGAACTATCCATCAAAGGCAACCTTTGCATTCTTCTACAAGTTCTTTATGACCATCCAATGCACAATATTTTCTCTAATTCTGGAAAGGAACCCAACTGCTTGGGTGTTAAGGCCCGACTTCGAGATGGGCACCATTATCTGCTCAGCTGTATTGGGGAGTGTCTTTCGTCTTGGAGTCTATTCATGGTGCGTGCAACAAAAGGGACCGATCTTTGTATCCATGTTCAAGCCCTTGGGTGTTGTCATTGCAGCATTCATGGTGGTCATCTTCCTGGGCGACGCGCTTCACCTTGGCAGTGTGATTGGATCTTTGATTATTGCAATTGGATTTTATGCTATGATGTGGGCACAGAGCAAAGAAAAGAGCAATTCTATGGAGAAAGAAGTCCACAGCTCGGCATCAGCCACCCAACATGCTCCCCTTCTACAATGCAGAGCCACGGAAGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

272

Amino Acids

29.79

Weight (kDa)

8.89

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccII CGCG 1 cut(s) 644
AciI CCGC 1 cut(s) 254
AclWI GGATC 2 cut(s) 211, 676
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 199, 757
AgsI TTSAA 1 cut(s) 589
AjnI CCWGG 1 cut(s) 633
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 3 cut(s) 33, 509, 756
AluI AGCT 3 cut(s) 33, 509, 756
AlwI GGATC 2 cut(s) 211, 676
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 2 cut(s) 474, 566
AsuHPI GGTGA 3 cut(s) 60, 242, 641
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 3 cut(s) 158, 494, 712
BanI GGYRCC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 100, 379, 422, 481
BciT130I CCWGG 1 cut(s) 635
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 1 cut(s) 261
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 28
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 1 cut(s) 612
BlpI GCTNAGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 474, 566
BmiI GGNNCC 3 cut(s) 452, 493, 567
BmrFI CCNGG 1 cut(s) 635
BmsI GCATC 2 cut(s) 30, 770
Bpu1102I GCTNAGC 1 cut(s) 505
Bsa29I ATCGAT 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 594, 634, 652, 801
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 285, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 757
Bse1I ACTGG 2 cut(s) 93, 120
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 635
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 4 cut(s) 594, 634, 652, 801
BseGI GGATG 3 cut(s) 111, 350, 414
BseLI CCNNNNNNNGG 2 cut(s) 199, 757
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 282, 519
BseNI ACTGG 2 cut(s) 93, 120
BseSI GKGCMC 3 cut(s) 158, 494, 712
BseXI GCAGC 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 1 cut(s) 475
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 206
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 2 cut(s) 199, 757
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 2 cut(s) 389, 614
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 158, 494, 712
Bsp143I GATC 4 cut(s) 203, 261, 570, 668
Bsp1720I GCTNAGC 1 cut(s) 505
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 2 cut(s) 281, 518
BspDI ATCGAT 1 cut(s) 206
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 452, 493, 567
BspPI GGATC 2 cut(s) 211, 676
BspT107I GGYRCC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 606
BsrI ACTGG 2 cut(s) 93, 120
BssECI CCNNGG 4 cut(s) 594, 634, 652, 801
BssMI GATC 4 cut(s) 203, 261, 570, 668
BssT1I CCWWGG 2 cut(s) 594, 652
Bst2UI CCWGG 1 cut(s) 635
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 133, 554
BstDEI CTNAG 2 cut(s) 268, 505
BstDSI CCRYGG 1 cut(s) 801
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 3 cut(s) 111, 350, 414
BstFNI CGCG 1 cut(s) 644
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 4 cut(s) 206, 264, 573, 671
BstMBI GATC 4 cut(s) 203, 261, 570, 668
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 1 cut(s) 633
BstSFI CTRYAG 1 cut(s) 28
BstSLI GKGCMC 3 cut(s) 158, 494, 712
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 668
BstXI CCANNNNNNTGG 1 cut(s) 462
BstYI RGATCY 1 cut(s) 668
Bsu15I ATCGAT 1 cut(s) 206
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 1 cut(s) 475
BsuTUI ATCGAT 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 3 cut(s) 111, 350, 414
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 113, 664
Cac8I GCNNGC 2 cut(s) 133, 554
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 2 cut(s) 474, 566
ClaI ATCGAT 1 cut(s) 206
CseI GACGC 1 cut(s) 650
Csp6I GTAC 1 cut(s) 302
CviAII CATG 4 cut(s) 546, 583, 619, 776
CviJI RGCY 8 cut(s) 33, 227, 475, 509, 592, 756, 767, 800
CviKI_1 RGCY 8 cut(s) 33, 227, 475, 509, 592, 756, 767, 800
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 2 cut(s) 268, 505
DpnI GATC 4 cut(s) 205, 263, 572, 670
DpnII GATC 4 cut(s) 203, 261, 570, 668
Eco130I CCWWGG 2 cut(s) 594, 652
Eco47I GGWCC 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 633
EcoT14I CCWWGG 2 cut(s) 594, 652
ErhI CCWWGG 2 cut(s) 594, 652
FaeI CATG 4 cut(s) 549, 586, 622, 779
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 545, 582, 618, 775
FauI CCCGC 1 cut(s) 261
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 3 cut(s) 118, 337, 401
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 645
GluI GCNGC 1 cut(s) 612
HaeIII GGCC 1 cut(s) 475
HgaI GACGC 1 cut(s) 650
HhaI GCGC 1 cut(s) 646
Hin1II CATG 4 cut(s) 549, 586, 622, 779
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HinfI GANTC 1 cut(s) 537
HphI GGTGA 3 cut(s) 60, 242, 641
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 2 cut(s) 271, 348
Hpy188III TCNNGA 2 cut(s) 443, 484
Hpy8I GTNNAC 1 cut(s) 751
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 3 cut(s) 91, 257, 794
HpyCH4V TGCA 7 cut(s) 329, 389, 423, 556, 611, 683, 795
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 2 cut(s) 268, 505
Hsp92II CATG 4 cut(s) 549, 586, 622, 779
HspAI GCGC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 4 cut(s) 203, 261, 570, 668
LmnI GCTCC 2 cut(s) 38, 784
LpnPI CCDG 6 cut(s) 74, 101, 159, 428, 620, 647
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 2 cut(s) 30, 770
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 205, 263, 572, 670
MboI GATC 4 cut(s) 203, 261, 570, 668
MboII GAAGA 2 cut(s) 385, 622
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 3 cut(s) 158, 494, 712
MluCI AATT 5 cut(s) 72, 146, 438, 684, 730
MlyI GAGTC 1 cut(s) 546
MnlI CCTC 1 cut(s) 287
MseI TTAA 3 cut(s) 122, 221, 470
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 635
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 2 cut(s) 389, 614
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 4 cut(s) 203, 261, 570, 668
NlaIII CATG 4 cut(s) 549, 586, 622, 779
NlaIV GGNNCC 3 cut(s) 452, 493, 567
NmeAIII GCCGAG 1 cut(s) 737
NspI RCATGY 1 cut(s) 779
OliI CACNNNNGTG 1 cut(s) 161
PctI GAATGC 2 cut(s) 389, 614
PkrI GCNGC 1 cut(s) 613
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 3 cut(s) 452, 493, 567
PspPI GGNCC 2 cut(s) 474, 566
PsuI RGATCY 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 3 cut(s) 122, 221, 470
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 4 cut(s) 203, 261, 570, 668
Sau96I GGNCC 2 cut(s) 474, 566
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 3 cut(s) 158, 494, 712
SetI ASST 7 cut(s) 35, 83, 298, 386, 511, 654, 758
SfaNI GCATC 2 cut(s) 30, 770
SfcI CTRYAG 1 cut(s) 28
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 5 cut(s) 72, 146, 438, 684, 730
SsiI CCGC 1 cut(s) 254
SspI AATATT 1 cut(s) 429
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 633
StyI CCWWGG 2 cut(s) 594, 652
TaqI TCGA 2 cut(s) 206, 483
TaqII GACCGA 1 cut(s) 583
TasI AATT 5 cut(s) 72, 146, 438, 684, 730
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 3 cut(s) 122, 221, 470
Tru9I TTAA 3 cut(s) 122, 221, 470
TscAI CASTG 2 cut(s) 120, 664
TseI GCWGC 1 cut(s) 611
TspDTI ATGAA 4 cut(s) 36, 73, 534, 607
TspRI CASTG 2 cut(s) 120, 664
VpaK11BI GGWCC 1 cut(s) 566
XagI CCTNNNNNAGG 1 cut(s) 197
XceI RCATGY 1 cut(s) 779
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.