RLG00000021984

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
79736581 .. 79737849
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021984

Sequence Viewer

Length: 564 bp
ATGATGATCTTGCAGCAGTCAAAGTGGGTCTTTGGAGGTCTTATGCTTGCAATGGCGAGGGTTTTGAAGGCATCATGGAATATTCTTCAGACATCAATTGTGAAGAACCGTCCGTCAATAATTACCATAGTCTTCTTCTACACCTTCTTTGTGGCAATTGAATCCACATTGTTCTCTCTATTTTTGGTAAGCAATCCAAGTGCTTGGGTACTACGGCCTGACATTGAGATGATCTCCATTGTCATCTCAGCTGTATTTGGTAGTGTATTCCATATTGGTGTTGAAACCTGGTGCTTGCACCAAAAGGGACCTATCTTTGTGGCCATGTTTAGGCCCTTGGCAGTTGCCATTGCTGCAGTCATGGTAGTCATCTTCCTCGGCGACGCACTTCACCTTGGCAGTGTGATTGGGTCTATCATTATTACAATTGGGTTTTATGCTATGATGTGGCCACAAATCAAAGAAAAGAGCACCAATGGTACAGAGAATGAAGTCCAAAGCTTGGCATCATCCACTCAAAAGACCCCTCTATTGCAATGCAGAACCTCAGGAGAAGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

20.68

Weight (kDa)

8.66

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 502
AcoI YGGCCR 2 cut(s) 321, 449
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 210, 481
AfiI CCNNNNNNNGG 2 cut(s) 330, 502
AgsI TTSAA 3 cut(s) 67, 161, 284
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 2 cut(s) 251, 501
AluI AGCT 2 cut(s) 251, 501
Alw21I GWGCWC 1 cut(s) 473
AoxI GGCC 4 cut(s) 215, 321, 332, 449
ApeKI GCWGC 2 cut(s) 13, 353
AspS9I GGNCC 2 cut(s) 308, 333
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 547
BalI TGGCCA 2 cut(s) 323, 451
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 25, 340
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 14, 354
BlsI GCNGC 2 cut(s) 15, 355
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 308, 333
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 80, 515
BpiI GAAGAC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BsaJI CCNNGG 3 cut(s) 336, 376, 394
BsaXI ACNNNNNCTCC 1 cut(s) 543
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 502
Bse21I CCTNAGG 1 cut(s) 547
Bse3DI GCAATG 3 cut(s) 57, 348, 542
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 3 cut(s) 336, 376, 394
BseGI GGATG 1 cut(s) 509
BseLI CCNNNNNNNGG 2 cut(s) 330, 502
BseMI GCAATG 3 cut(s) 57, 348, 542
BseMII CTCAG 2 cut(s) 261, 561
BseXI GCAGC 2 cut(s) 25, 340
BshFI GGCC 4 cut(s) 217, 323, 334, 451
BsiHKAI GWGCWC 1 cut(s) 473
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 330, 502
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 4 cut(s) 217, 323, 334, 451
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 2 cut(s) 6, 231
BspANI GGCC 4 cut(s) 217, 323, 334, 451
BspCNI CTCAG 2 cut(s) 260, 560
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 358
BsrDI GCAATG 3 cut(s) 57, 348, 542
BssECI CCNNGG 3 cut(s) 336, 376, 394
BssMI GATC 2 cut(s) 6, 231
BssT1I CCWWGG 2 cut(s) 336, 394
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 48, 296
BstDEI CTNAG 2 cut(s) 247, 547
BstF5I GGATG 1 cut(s) 509
BstKTI GATC 2 cut(s) 9, 234
BstMBI GATC 2 cut(s) 6, 231
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 25, 340
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 4 cut(s) 217, 323, 334, 451
BtsCI GGATG 1 cut(s) 509
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 2 cut(s) 48, 296
Cfr13I GGNCC 2 cut(s) 308, 333
CseI GACGC 1 cut(s) 392
CsiI ACCWGGT 1 cut(s) 287
Csp6I GTAC 2 cut(s) 209, 480
CviAII CATG 3 cut(s) 75, 325, 361
CviJI RGCY 6 cut(s) 217, 251, 323, 334, 451, 501
CviKI_1 RGCY 6 cut(s) 217, 251, 323, 334, 451, 501
CviQI GTAC 2 cut(s) 209, 480
DdeI CTNAG 2 cut(s) 247, 547
DpnI GATC 2 cut(s) 8, 233
DpnII GATC 2 cut(s) 6, 231
EaeI YGGCCR 2 cut(s) 321, 449
Eco130I CCWWGG 2 cut(s) 336, 394
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 547
EcoO109I RGGNCCY 2 cut(s) 308, 333
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 336, 394
ErhI CCWWGG 2 cut(s) 336, 394
FaeI CATG 3 cut(s) 78, 328, 364
FaiI YATR 8 cut(s) 44, 76, 128, 273, 326, 362, 438, 443
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 321
FatI CATG 3 cut(s) 74, 324, 360
Fnu4HI GCNGC 2 cut(s) 14, 354
FokI GGATG 1 cut(s) 496
Fsp4HI GCNGC 2 cut(s) 14, 354
GluI GCNGC 2 cut(s) 14, 354
HaeIII GGCC 4 cut(s) 217, 323, 334, 451
HgaI GACGC 1 cut(s) 392
Hin1II CATG 3 cut(s) 78, 328, 364
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 549
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 61, 154
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 6 cut(s) 13, 50, 298, 356, 535, 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 247, 547
Hsp92II CATG 3 cut(s) 78, 328, 364
Kzo9I GATC 2 cut(s) 6, 231
LpnPI CCDG 4 cut(s) 231, 274, 301, 534
Lsp1109I GCAGC 2 cut(s) 25, 340
LweI GCATC 2 cut(s) 80, 515
MabI ACCWGGT 1 cut(s) 287
MalI GATC 2 cut(s) 8, 233
MboI GATC 2 cut(s) 6, 231
MboII GAAGA 5 cut(s) 77, 115, 124, 127, 364
MfeI CAATTG 3 cut(s) 96, 156, 426
MhlI GDGCHC 1 cut(s) 473
MlsI TGGCCA 2 cut(s) 323, 451
MluCI AATT 4 cut(s) 96, 120, 156, 426
MluNI TGGCCA 2 cut(s) 323, 451
MnlI CCTC 5 cut(s) 29, 51, 386, 537, 556
Mox20I TGGCCA 2 cut(s) 323, 451
MscI TGGCCA 2 cut(s) 323, 451
MslI CAYNNNNRTG 2 cut(s) 227, 276
Msp20I TGGCCA 2 cut(s) 323, 451
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 289
MunI CAATTG 3 cut(s) 96, 156, 426
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 2 cut(s) 6, 231
NlaIII CATG 3 cut(s) 78, 328, 364
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 357
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 2 cut(s) 15, 355
PpuMI RGGWCCY 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 308, 333
PspPPI RGGWCCY 1 cut(s) 308
PstI CTGCAG 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 210, 481
RsaNI GTAC 2 cut(s) 209, 480
RseI CAYNNNNRTG 2 cut(s) 227, 276
SatI GCNGC 2 cut(s) 14, 354
Sau3AI GATC 2 cut(s) 6, 231
Sau96I GGNCC 2 cut(s) 308, 333
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 473
SetI ASST 8 cut(s) 40, 146, 253, 290, 313, 396, 503, 548
SexAI ACCWGGT 1 cut(s) 287
SfaNI GCATC 2 cut(s) 80, 515
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 227, 276
Sse9I AATT 4 cut(s) 96, 120, 156, 426
SspI AATATT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 2 cut(s) 336, 394
TaaI ACNGT 1 cut(s) 110
TasI AATT 4 cut(s) 96, 120, 156, 426
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 406
TseI GCWGC 2 cut(s) 13, 353
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.