RchiOBHm_Chr2g0170811

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000534
Physical Location & Seq
Reverse (-)
84623832 .. 84625817
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53830

Sequence Viewer

Length: 1047 bp
ATGGGAACTCTTGATGGGAAGGAGAAGGTACGAAGCATGGATCAGCCTTGTAAATGGGGCATACTGCTACCTTTTGCAGCCATGGTTACAGTTCAGTTTACCGATGTGGGGATATCAACTATAAGCAAAGCAGCTATGTCAAGAGGAATGAGCAGTTATGTTTTGATTGTCTACTCTAATGCCCTTGCTACCCTCCTTCTCCTTCCCTCTTTCATTTTACAGAGTTCAAGTATATTATTGGCATATAATGGCATCAACTACAGCTCACCAACACTTTCTTCAGCTATGGCAAATCTTATACCAATCTACACGTTCATGTTGGCAATCATTTTCAGGCTGGAAAAACTAGATTTGAGGAGATCAAGCAGTCAAGCTAAAGTGTTGGGCACTATAGTATCAGTCTCTGGAGCATTTATAATAATCCTATATAAGGGCTTAGTAATCTTAAAGCCTTCATCGCCATCCAACTTCCTCATGATCTCACATCAGTCAAACTCAAGGTGGGTCTTTGGAGGTCTTATGCTGGCAATGTCCTGCCTTTTGTCTGCAATTTGGAACATTGTTCAGGCATCCACTGTTAAAAACTGTCCATCAAAGGTGACAGTGGTCTTCTTCTACACGTTCTTTATGACAATCCAATGCACAATATTTTCTCTGATTGTGGAAAGGAATCCGAATACTTGGGTTATAAGACCTGGCATTGAGATGATCTCCATTGTCTGCTCAGCTATAATGGGGAATGTGTTCCATGTTGGTGTTCATACTTGGTGCTTGCACCAAAAGGGACCTGTCTTTGTAGCCATGTTCAGACCTTTGGGAGTTGCCATTGCGGCTGTCATGGTGGTCTTCTTCCTCGGCGATCCGCTTCATCTTGGCAGTGTGGTTGGATCTGTCATCATTGCCATTGGGTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGGGCAGTAATGTTGTGGAGAATGAAGTCCACAGCTTGGCATCAACAAACCAACACACCACCCCTCTTTTGCAATGCAGAAGCACAGAAGAAGAAAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

348

Amino Acids

38.11

Weight (kDa)

9.18

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 170 - 307 6.9e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 416, 689
AccB7I CCANNNNNTGG 1 cut(s) 979
AccI GTMKAC 1 cut(s) 171
AciI CCGC 2 cut(s) 830, 863
AclWI GGATC 3 cut(s) 48, 854, 895
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 108, 430, 979
AflIII ACRYGT 2 cut(s) 309, 618
AgsI TTSAA 1 cut(s) 228
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 6 cut(s) 134, 264, 284, 374, 728, 978
AluI AGCT 6 cut(s) 134, 264, 284, 374, 728, 978
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 3 cut(s) 48, 854, 895
AlwNI CAGNNNCTG 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 77, 131
Asp700I GAANNNNTTC 1 cut(s) 743
AspS9I GGNCC 1 cut(s) 785
AsuHPI GGTGA 2 cut(s) 258, 610
AvaII GGWCC 1 cut(s) 785
BaeGI GKGCMC 2 cut(s) 389, 931
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BbsI GAAGAC 2 cut(s) 601, 838
BbvI GCAGC 2 cut(s) 89, 143
BccI CCATC 3 cut(s) 8, 469, 598
BciT130I CCWGG 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 2 cut(s) 259, 390
BglI GCCNNNNNGGC 1 cut(s) 830
BisI GCNGC 3 cut(s) 78, 132, 831
BlpI GCTNAGC 1 cut(s) 724
BlsI GCNGC 3 cut(s) 79, 133, 832
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 785
BmgT120I GGNCC 1 cut(s) 785
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 3 cut(s) 261, 578, 992
BoxI GACNNNNGTC 1 cut(s) 605
BpiI GAAGAC 2 cut(s) 601, 838
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 724
BpuEI CTTGAG 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 81, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 430, 979
Bse3DI GCAATG 4 cut(s) 534, 825, 897, 1022
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 81, 853
BseGI GGATG 2 cut(s) 461, 569
BseLI CCNNNNNNNGG 3 cut(s) 108, 430, 979
BseMI GCAATG 4 cut(s) 534, 825, 897, 1022
BseMII CTCAG 1 cut(s) 738
BseRI GAGGAG 1 cut(s) 370
BseSI GKGCMC 2 cut(s) 389, 931
BseXI GCAGC 2 cut(s) 89, 143
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 3 cut(s) 108, 430, 979
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 798
Bsp1286I GDGCHC 2 cut(s) 389, 931
Bsp143I GATC 6 cut(s) 40, 359, 477, 708, 859, 887
Bsp1720I GCTNAGC 1 cut(s) 724
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 2 cut(s) 830, 863
BspCNI CTCAG 1 cut(s) 737
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 786
BspPI GGATC 3 cut(s) 48, 854, 895
BsrDI GCAATG 4 cut(s) 534, 825, 897, 1022
BssECI CCNNGG 2 cut(s) 81, 853
BssMI GATC 6 cut(s) 40, 359, 477, 708, 859, 887
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 91, 577, 587, 604
BstC8I GCNNGC 2 cut(s) 525, 773
BstDEI CTNAG 2 cut(s) 436, 724
BstDSI CCRYGG 1 cut(s) 81
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 461, 569
BstKTI GATC 6 cut(s) 43, 362, 480, 711, 862, 890
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 6 cut(s) 40, 359, 477, 708, 859, 887
BstMWI GCNNNNNNNGC 2 cut(s) 457, 830
BstNI CCWGG 1 cut(s) 696
BstPAI GACNNNNGTC 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 2 cut(s) 259, 390
BstSLI GKGCMC 2 cut(s) 389, 931
BstV1I GCAGC 2 cut(s) 89, 143
BstV2I GAAGAC 2 cut(s) 601, 838
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 461, 569
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 3 cut(s) 573, 609, 883
Cac8I GCNNGC 2 cut(s) 525, 773
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 785
Csp6I GTAC 1 cut(s) 29
CviAII CATG 7 cut(s) 37, 82, 316, 475, 749, 802, 838
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 436, 724
DpnI GATC 6 cut(s) 42, 361, 479, 710, 861, 889
DpnII GATC 6 cut(s) 40, 359, 477, 708, 859, 887
Eco130I CCWWGG 1 cut(s) 81
Eco32I GATATC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 785
Eco57I CTGAAG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 694
EcoRV GATATC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 7 cut(s) 40, 85, 319, 478, 752, 805, 841
FaqI GGGAC 1 cut(s) 798
FatI CATG 7 cut(s) 36, 81, 315, 474, 748, 801, 837
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 78, 132, 831
FokI GGATG 2 cut(s) 448, 556
Fsp4HI GCNGC 3 cut(s) 78, 132, 831
FspBI CTAG 1 cut(s) 347
GluI GCNGC 3 cut(s) 78, 132, 831
GsuI CTGGAG 1 cut(s) 426
Hin1II CATG 7 cut(s) 40, 85, 319, 478, 752, 805, 841
HinfI GANTC 1 cut(s) 670
HphI GGTGA 2 cut(s) 258, 610
Hpy166II GTNNAC 3 cut(s) 99, 172, 973
Hpy188I TCNGA 3 cut(s) 657, 675, 809
Hpy188III TCNNGA 4 cut(s) 11, 141, 405, 475
Hpy8I GTNNAC 3 cut(s) 99, 172, 973
HpyAV CCTTC 5 cut(s) 13, 19, 206, 212, 462
HpyCH4III ACNGT 4 cut(s) 91, 577, 587, 604
HpyCH4IV ACGT 2 cut(s) 311, 620
HpyCH4V TGCA 6 cut(s) 77, 548, 642, 775, 1015, 1020
HpyF10VI GCNNNNNNNGC 2 cut(s) 457, 830
HpyF3I CTNAG 2 cut(s) 436, 724
HpySE526I ACGT 2 cut(s) 311, 620
Hsp92II CATG 7 cut(s) 40, 85, 319, 478, 752, 805, 841
Kzo9I GATC 6 cut(s) 40, 359, 477, 708, 859, 887
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 9 cut(s) 319, 323, 390, 509, 547, 551, 681, 708, 801
Lsp1109I GCAGC 2 cut(s) 89, 143
LweI GCATC 3 cut(s) 261, 578, 992
MaeI CTAG 1 cut(s) 347
MaeII ACGT 2 cut(s) 311, 620
MaeIII GTNAC 2 cut(s) 85, 598
MalI GATC 6 cut(s) 42, 361, 479, 710, 861, 889
MboI GATC 6 cut(s) 40, 359, 477, 708, 859, 887
MboII GAAGA 7 cut(s) 270, 601, 604, 838, 841, 1043, 1046
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 2 cut(s) 389, 931
MluCI AATT 1 cut(s) 549
MmeI TCCRAC 2 cut(s) 489, 865
MnlI CCTC 8 cut(s) 137, 203, 217, 348, 482, 506, 863, 1017
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 2 cut(s) 446, 579
MslI CAYNNNNRTG 3 cut(s) 314, 704, 753
MspR9I CCNGG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 2 cut(s) 457, 830
NcoI CCATGG 1 cut(s) 81
NdeII GATC 6 cut(s) 40, 359, 477, 708, 859, 887
NlaIII CATG 7 cut(s) 40, 85, 319, 478, 752, 805, 841
NlaIV GGNNCC 1 cut(s) 786
NmeAIII GCCGAG 1 cut(s) 834
NmuCI GTSAC 1 cut(s) 598
PagI TCATGA 1 cut(s) 474
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 670
PflMI CCANNNNNTGG 1 cut(s) 979
PkrI GCNGC 3 cut(s) 79, 133, 832
PpuMI RGGWCCY 1 cut(s) 785
PshAI GACNNNNGTC 1 cut(s) 605
PsiI TTATAA 2 cut(s) 416, 689
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 1 cut(s) 785
PspPPI RGGWCCY 1 cut(s) 785
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 887
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 3 cut(s) 314, 704, 753
SaqAI TTAA 2 cut(s) 446, 579
SatI GCNGC 3 cut(s) 78, 132, 831
Sau3AI GATC 6 cut(s) 40, 359, 477, 708, 859, 887
Sau96I GGNCC 1 cut(s) 785
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 2 cut(s) 389, 931
SfaNI GCATC 3 cut(s) 261, 578, 992
SfcI CTRYAG 2 cut(s) 259, 390
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 3 cut(s) 314, 704, 753
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 1 cut(s) 549
SsiI CCGC 2 cut(s) 830, 863
SspI AATATT 1 cut(s) 648
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 4 cut(s) 91, 577, 587, 604
TaiI ACGT 2 cut(s) 314, 623
TasI AATT 1 cut(s) 549
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 2 cut(s) 446, 579
Tru9I TTAA 2 cut(s) 446, 579
TscAI CASTG 3 cut(s) 580, 609, 883
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 2 cut(s) 77, 131
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 6 cut(s) 202, 304, 444, 749, 857, 981
TspRI CASTG 3 cut(s) 580, 609, 883
Van91I CCANNNNNTGG 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 785
XagI CCTNNNNNAGG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.