pycom16g07600

WAT1-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
4968223 .. 4969114
892 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07600.2

Sequence Viewer

Length: 486 bp
ATGACTGATATGTTGTCTCATAAGCAACTTTTATCCGAACAGTCAAACTGGGTCCTTGGAAGAGTGTGTCTCGCGGCAAATTGCATCTTGGCCGCATCTTGGCCTATTGTACAGGCATCAGTTCTAAAGAAATACCGCGCAGAGCTGATCATGGTTTTTAATTATTGCTTCTTTGTGGCTATTCAATCTGTAGTAGGAGTGTTTGGCTCAGCATTCCAGGTTGGTGTATCTACTTGGTGTCTTAGAAGGACAGGGCCTGTGTTTGTAGCTATGTTCAAGCCTTTGGGGATTGTCGTTGCAGTTTTCATTGGTGTTACCTTCTTAGGTGATACTTTCTACCTTGGGAGTTGTTATTGTCAGTGGATTTTATTCTGTGATGTGGGGAAAGCCAATGAAGAGAAGAGGGGTGATGATGCAGGGGAAGGAAGCCTGGCATCGAGCAAACAACGGGTCCCTCTATTGCAAAGCCATATTGAAGAAATATAG

Protein Analysis

162

Amino Acids

17.75

Weight (kDa)

7.55

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 74, 138
AciI CCGC 3 cut(s) 74, 93, 136
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 3 cut(s) 185, 277, 476
AjnI CCWGG 2 cut(s) 216, 429
AluBI AGCT 2 cut(s) 145, 269
AluI AGCT 2 cut(s) 145, 269
Alw26I GTCTC 2 cut(s) 21, 74
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 3 cut(s) 90, 101, 254
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 52, 254, 451
AsuHPI GGTGA 2 cut(s) 338, 419
AvaII GGWCC 2 cut(s) 52, 451
BciT130I CCWGG 2 cut(s) 218, 431
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 21, 74
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 75, 93
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 2 cut(s) 76, 94
Bme1390I CCNGG 2 cut(s) 218, 431
Bme18I GGWCC 2 cut(s) 52, 451
BmgT120I GGNCC 3 cut(s) 52, 254, 451
BmiI GGNNCC 3 cut(s) 53, 452, 453
BmrFI CCNGG 2 cut(s) 218, 431
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 5 cut(s) 93, 104, 125, 403, 443
BmuI ACTGGG 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu1102I GCTNAGC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 55, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 2 cut(s) 218, 431
BseDI CCNNGG 2 cut(s) 55, 340
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 74, 138
BshFI GGCC 3 cut(s) 92, 103, 256
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 2 cut(s) 21, 74
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 92, 103, 256
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 3 cut(s) 74, 93, 136
BspANI GGCC 3 cut(s) 92, 103, 256
BspCNI CTCAG 1 cut(s) 221
BspFNI CGCG 2 cut(s) 74, 138
BspLI GGNNCC 3 cut(s) 53, 452, 453
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 55, 340
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 55, 340
Bst2UI CCWGG 2 cut(s) 218, 431
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 3 cut(s) 55, 390, 395
BstAUI TGTACA 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 208, 242, 322
BstFNI CGCG 2 cut(s) 74, 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 21, 74
BstMBI GATC 1 cut(s) 147
BstNI CCWGG 2 cut(s) 218, 431
BstSCI CCNGG 2 cut(s) 216, 429
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 2 cut(s) 74, 138
BsuRI GGCC 3 cut(s) 92, 103, 256
BtsIMutI CAGTG 1 cut(s) 365
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 52, 254, 451
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 151
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 3 cut(s) 208, 242, 322
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 55, 390, 395
EarI CTCTTC 3 cut(s) 55, 390, 395
Eco130I CCWWGG 2 cut(s) 55, 340
Eco47I GGWCC 2 cut(s) 52, 451
EcoO109I RGGNCCY 3 cut(s) 52, 254, 451
EcoRII CCWGG 2 cut(s) 216, 429
EcoT14I CCWWGG 2 cut(s) 55, 340
ErhI CCWWGG 2 cut(s) 55, 340
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 11, 21, 152, 272, 471, 484
FaqI GGGAC 1 cut(s) 437
FatI CATG 1 cut(s) 150
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 75, 93
Fsp4HI GCNGC 2 cut(s) 75, 93
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 75, 93
HaeIII GGCC 3 cut(s) 92, 103, 256
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HphI GGTGA 2 cut(s) 338, 419
Hpy188I TCNGA 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 240, 328, 416
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 84, 299, 416, 463
HpyF3I CTNAG 3 cut(s) 208, 242, 322
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 138
KflI GGGWCCC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 9 cut(s) 34, 98, 203, 230, 237, 270, 402, 416, 443
LweI GCATC 5 cut(s) 93, 104, 125, 403, 443
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 72, 407, 412
MluCI AATT 2 cut(s) 79, 160
MnlI CCTC 2 cut(s) 396, 465
MseI TTAA 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 218, 431
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 218, 431
MvnI CGCG 2 cut(s) 74, 138
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 3 cut(s) 53, 452, 453
PctI GAATGC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 76, 94
PpuMI RGGWCCY 2 cut(s) 52, 451
Psp5II RGGWCCY 2 cut(s) 52, 451
Psp6I CCWGG 2 cut(s) 216, 429
PspGI CCWGG 2 cut(s) 216, 429
PspN4I GGNNCC 3 cut(s) 53, 452, 453
PspPI GGNCC 3 cut(s) 52, 254, 451
PspPPI RGGWCCY 2 cut(s) 52, 451
PstNI CAGNNNCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 75, 93
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 3 cut(s) 52, 254, 451
ScrFI CCNGG 2 cut(s) 218, 431
SetI ASST 6 cut(s) 147, 222, 271, 320, 328, 342
SfaNI GCATC 5 cut(s) 93, 104, 125, 403, 443
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 2 cut(s) 52, 451
Sse9I AATT 2 cut(s) 79, 160
SsiI CCGC 3 cut(s) 74, 93, 136
StyD4I CCNGG 2 cut(s) 216, 429
StyI CCWWGG 2 cut(s) 55, 340
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 437
TasI AATT 2 cut(s) 79, 160
TatI WGTACW 1 cut(s) 109
TauI GCSGC 2 cut(s) 77, 95
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 295, 408
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 52, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.