Prupe.3G281000_v2.0.a1

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000534
Physical Location & Seq
Reverse (-)
25640501 .. 25643075
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G281000.2

Sequence Viewer

Length: 1083 bp
ATGGATATGGTGGGTGGTTGTATGTGGTGGGGTGTTTTACCTTTTGCAGCCATGGTAATGGTGGAGTTCGCAGATGTGGGCATATCAACTATAAGCAAAGCAGCAATGTCCAGAGGAATGAGCACTTATGTTTTTGTTGTGTACTCTAATGCCCTTGCCACCCTCCTCCTCCTTCCTTGTTTCATTTTCCAAAAGAAGCCGGTTTCTCTTACTCTGTCACTCCTTTCTGGGTTCTTCCTCCTTGGCCTAATTGGGAGTTCGAGTCTGATATTGGCATATAATGGCATCAACTACAGCTCCCCAACAGTTGCATCAGCAATGGGAAATCTTATACCGATTTACACATTTGTGCTGGCAATCATTTTCAGGATGGAAAAACTAGACTTAAGGAGATCAAGCAGTCAAGCAAAATTGTTGGGAACTATAGTATCAGTATCTGGGGCATTTGTAGTAATTCTTTACAAGGGCTCAGCAATCTTATTGTTCAAGGCTTTATCACCATCCAACTTCCCTCCCCACCAGAACTTGATCATCACACAACACTCAAAGTGGATCTTTGGAGGTCTTTTCCTTGCATTGTCTTGCCTTTTGGCTGCAATATGGAACATTGTTCAGGCATCCATTGTTAACAACTGTCCATCAAAGGTGACCATAGTATTCTTCTATACCTTCTTTGTGACAATCCAATGCACAATATTTTCACTGATTGTGGAAAGAAATCCAAATTCCTGGACATTAAGGCCCAACATCGAGATGATCGCCATTGTCTGCTCGGCTGTATTTGGGAGTGTCTTTCGGATTGGTGTTCATACTTGGTGCTTGCACCAAAAAGGGCCTATCTTTGTAGCCATGTTCAGGCCCTTGGGAGTTGCCATTGCAGCCGTCATGGTGGTCATCTTCCTAGGCGAAGCACTTCACCTTGGCAGTGTGATTGGATCTGTCATTGTTGCAATTGGATTCTATGCTATGATGTGGGGACAAATCAAAGAAAAGAGCATTGTGATGGAGAATGAAGTCCACAGCTTGGCATCATCCACCCAACAGACCCCTCTTTTGCAATGCAGAACCTCAGAAAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

361

Amino Acids

39.29

Weight (kDa)

9.24

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1024
AclWI GGATC 2 cut(s) 560, 943
AcsI RAATTY 1 cut(s) 724
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 855, 1024
AflII CTTAAG 1 cut(s) 385
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 1 cut(s) 728
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 2 cut(s) 297, 1023
AluI AGCT 2 cut(s) 297, 1023
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 2 cut(s) 560, 943
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 4 cut(s) 244, 740, 833, 857
ApeKI GCWGC 4 cut(s) 47, 101, 593, 878
ApoI RAATTY 1 cut(s) 724
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
Asp700I GAANNNNTTC 1 cut(s) 912
AspA2I CCTAGG 1 cut(s) 901
AspS9I GGNCC 3 cut(s) 741, 833, 858
AsuHPI GGTGA 3 cut(s) 489, 658, 908
AvrII CCTAGG 1 cut(s) 901
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanII GRGCYC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 4 cut(s) 59, 113, 580, 890
BccI CCATC 4 cut(s) 364, 508, 646, 997
BceAI ACGGC 1 cut(s) 866
BciT130I CCWGG 1 cut(s) 730
BclI TGATCA 1 cut(s) 528
BfaI CTAG 2 cut(s) 380, 902
BfmI CTRYAG 2 cut(s) 292, 423
BfrI CTTAAG 1 cut(s) 385
BisI GCNGC 4 cut(s) 48, 102, 594, 879
BlnI CCTAGG 1 cut(s) 901
BlpI GCTNAGC 1 cut(s) 469
BlsI GCNGC 4 cut(s) 49, 103, 595, 880
Bme1390I CCNGG 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 741, 833, 858
BmrFI CCNGG 1 cut(s) 730
BmsI GCATC 4 cut(s) 294, 320, 626, 1037
Bpu1102I GCTNAGC 1 cut(s) 469
BsaJI CCNNGG 5 cut(s) 51, 241, 861, 901, 919
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 855, 1024
Bse118I RCCGGY 1 cut(s) 199
Bse3DI GCAATG 4 cut(s) 111, 324, 873, 1064
BseBI CCWGG 1 cut(s) 730
BseDI CCNNGG 5 cut(s) 51, 241, 861, 901, 919
BseGI GGATG 4 cut(s) 375, 500, 617, 1031
BseLI CCNNNNNNNGG 2 cut(s) 855, 1024
BseMI GCAATG 4 cut(s) 111, 324, 873, 1064
BseMII CTCAG 2 cut(s) 483, 1083
BseRI GAGGAG 2 cut(s) 155, 158
BseXI GCAGC 4 cut(s) 59, 113, 580, 890
BshFI GGCC 4 cut(s) 246, 742, 835, 859
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 990
BslI CCNNNNNNNGG 2 cut(s) 855, 1024
BsmFI GGGAC 1 cut(s) 990
BsnI GGCC 4 cut(s) 246, 742, 835, 859
Bsp1286I GDGCHC 2 cut(s) 125, 470
Bsp143I GATC 5 cut(s) 392, 528, 552, 756, 935
Bsp1720I GCTNAGC 1 cut(s) 469
Bsp19I CCATGG 1 cut(s) 51
BspANI GGCC 4 cut(s) 246, 742, 835, 859
BspCNI CTCAG 2 cut(s) 482, 1082
BspPI GGATC 2 cut(s) 560, 943
BspTI CTTAAG 1 cut(s) 385
BsrDI GCAATG 4 cut(s) 111, 324, 873, 1064
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 5 cut(s) 51, 241, 861, 901, 919
BssMI GATC 5 cut(s) 392, 528, 552, 756, 935
BssT1I CCWWGG 5 cut(s) 51, 241, 861, 901, 919
Bst2UI CCWGG 1 cut(s) 730
Bst4CI ACNGT 2 cut(s) 307, 635
BstAFI CTTAAG 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 354, 821
BstDEI CTNAG 2 cut(s) 469, 1069
BstDSI CCRYGG 1 cut(s) 51
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 4 cut(s) 375, 500, 617, 1031
BstKTI GATC 5 cut(s) 395, 531, 555, 759, 938
BstMBI GATC 5 cut(s) 392, 528, 552, 756, 935
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstNI CCWGG 1 cut(s) 730
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 728
BstSFI CTRYAG 2 cut(s) 292, 423
BstV1I GCAGC 4 cut(s) 59, 113, 580, 890
BstX2I RGATCY 2 cut(s) 552, 935
BstXI CCANNNNNNTGG 2 cut(s) 58, 729
BstYI RGATCY 2 cut(s) 552, 935
BsuRI GGCC 4 cut(s) 246, 742, 835, 859
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 4 cut(s) 375, 500, 617, 1031
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 701, 931
Cac8I GCNNGC 2 cut(s) 354, 821
CaiI CAGNNNCTG 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 741, 833, 858
Csp6I GTAC 1 cut(s) 142
CviAII CATG 3 cut(s) 52, 850, 886
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 469, 1069
DpnI GATC 5 cut(s) 394, 530, 554, 758, 937
DpnII GATC 5 cut(s) 392, 528, 552, 756, 935
Eco130I CCWWGG 5 cut(s) 51, 241, 861, 901, 919
Eco24I GRGCYC 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 646
EcoO109I RGGNCCY 2 cut(s) 833, 858
EcoO65I GGTNACC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 728
EcoT14I CCWWGG 5 cut(s) 51, 241, 861, 901, 919
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 5 cut(s) 51, 241, 861, 901, 919
FaeI CATG 3 cut(s) 55, 853, 889
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 1 cut(s) 990
FatI CATG 3 cut(s) 51, 849, 885
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 48, 102, 594, 879
FokI GGATG 4 cut(s) 382, 487, 604, 1018
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 4 cut(s) 48, 102, 594, 879
FspBI CTAG 2 cut(s) 380, 902
GluI GCNGC 4 cut(s) 48, 102, 594, 879
HaeIII GGCC 4 cut(s) 246, 742, 835, 859
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 55, 853, 889
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 2 cut(s) 262, 957
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 1 cut(s) 200
HphI GGTGA 3 cut(s) 489, 658, 908
Hpy166II GTNNAC 3 cut(s) 142, 628, 1018
Hpy188I TCNGA 3 cut(s) 267, 798, 1072
Hpy188III TCNNGA 3 cut(s) 111, 367, 751
Hpy8I GTNNAC 3 cut(s) 142, 628, 1018
HpyAV CCTTC 2 cut(s) 182, 679
HpyCH4III ACNGT 2 cut(s) 307, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 2 cut(s) 469, 1069
Hsp92II CATG 3 cut(s) 55, 853, 889
Ksp22I TGATCA 1 cut(s) 528
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 5 cut(s) 392, 528, 552, 756, 935
LmnI GCTCC 1 cut(s) 302
Lsp1109I GCAGC 4 cut(s) 59, 113, 580, 890
LweI GCATC 4 cut(s) 294, 320, 626, 1037
MaeI CTAG 2 cut(s) 380, 902
MaeIII GTNAC 3 cut(s) 216, 646, 676
MalI GATC 5 cut(s) 394, 530, 554, 758, 937
MboI GATC 5 cut(s) 392, 528, 552, 756, 935
MboII GAAGA 3 cut(s) 226, 652, 889
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 2 cut(s) 552, 935
MhlI GDGCHC 2 cut(s) 125, 470
MluCI AATT 5 cut(s) 249, 410, 453, 724, 951
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 9 cut(s) 107, 173, 176, 179, 248, 522, 554, 1059, 1078
MroXI GAANNNNTTC 1 cut(s) 912
MseI TTAA 3 cut(s) 386, 627, 737
MslI CAYNNNNRTG 4 cut(s) 56, 347, 752, 1001
MspCI CTTAAG 1 cut(s) 385
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 730
MunI CAATTG 1 cut(s) 951
MvaI CCWGG 1 cut(s) 730
MwoI GCNNNNNNNGC 1 cut(s) 878
NcoI CCATGG 1 cut(s) 51
NdeII GATC 5 cut(s) 392, 528, 552, 756, 935
NlaIII CATG 3 cut(s) 55, 853, 889
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 3 cut(s) 216, 646, 676
OliI CACNNNNGTG 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 1 cut(s) 957
PflMI CCANNNNNTGG 1 cut(s) 1024
PfoI TCCNGGA 1 cut(s) 728
PkrI GCNGC 4 cut(s) 49, 103, 595, 880
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 728
PspEI GGTNACC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 728
PspPI GGNCC 3 cut(s) 741, 833, 858
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 552, 935
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 4 cut(s) 56, 347, 752, 1001
SaqAI TTAA 3 cut(s) 386, 627, 737
SatI GCNGC 4 cut(s) 48, 102, 594, 879
Sau3AI GATC 5 cut(s) 392, 528, 552, 756, 935
Sau96I GGNCC 3 cut(s) 741, 833, 858
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 730
SduI GDGCHC 2 cut(s) 125, 470
SetI ASST 8 cut(s) 43, 299, 565, 648, 671, 921, 1025, 1070
SfaNI GCATC 4 cut(s) 294, 320, 626, 1037
SfcI CTRYAG 2 cut(s) 292, 423
SmiMI CAYNNNNRTG 4 cut(s) 56, 347, 752, 1001
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 5 cut(s) 249, 410, 453, 724, 951
SspI AATATT 1 cut(s) 696
SspMI CTAG 2 cut(s) 380, 902
StyD4I CCNGG 1 cut(s) 728
StyI CCWWGG 5 cut(s) 51, 241, 861, 901, 919
TaaI ACNGT 2 cut(s) 307, 635
TaqI TCGA 2 cut(s) 260, 750
TasI AATT 5 cut(s) 249, 410, 453, 724, 951
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 1 cut(s) 957
Tru1I TTAA 3 cut(s) 386, 627, 737
Tru9I TTAA 3 cut(s) 386, 627, 737
TscAI CASTG 2 cut(s) 708, 931
TseFI GTSAC 3 cut(s) 216, 646, 676
TseI GCWGC 4 cut(s) 47, 101, 593, 878
Tsp45I GTSAC 3 cut(s) 216, 646, 676
TspDTI ATGAA 3 cut(s) 172, 797, 1026
TspRI CASTG 2 cut(s) 708, 931
Van91I CCANNNNNTGG 1 cut(s) 1024
Vha464I CTTAAG 1 cut(s) 385
XapI RAATTY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 901
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 2 cut(s) 380, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.