MD05G1187100.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
31519922 .. 31526849
6928 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1187100.v1.1.491

Sequence Viewer

Length: 4302 bp
ATGGAGATCAGTTGTAATCTTGAGAAAGCAGGCCACAGTTTTACACGAAGTTCTTCCTTCTGGGTTGACAAGGGAAGCGATGTTTTCTCAAAGTCTTCGTCGCGAGGAGAGGACGATGAGGAAGCTCTCAAATGGGCTGCCCTTCAGAGGCTTCCGACTTTTCAGCGCTTGAACAAAGGCCTGCTCTCTACTCCTCAAGGCCATGCCAACGAAGTTGATGTGAGCAATCTTGAAGGGAAAGACAGGAAGAGTTTGATCGAGCGGTTAGTTGGAGTAGCTGAGGAGGATCATGAGAAATTCTTGTTGAGACTCAAGAGCCGCATTGACAGAGTTGGAATTGATATTCCGAAAATTGAAGTTAGATTCCAGAATTTGAAAATTGCAGCTGAAGCTTATGCAGGAAGCAGGGCAGTGCCGACAGTTTTAAATTACTGTGTTAATATGGTGGAGGGTTTGTTGAACTCCCTTCATATTCTTCCTAGCAAGAAGAAGCACGTGTCTATCCTCAAAGATGTTAGTGGGATCATTAGGCCTTGCAGAATGGCACTGCTTTTGGGTCCTCCTAGTTCCGGAAAGACCACGCTCTTGTTGGCTTTGGCTGGACAGCTTGACCAGGATCTTGAGTTTTCAGGAAGAGTGACCTACAATGGTCACGGCATGCATGAGTTTGTGCCTCAGAGGACTGCTGCCTATATCAGCCAACGTGATGTCCATACGGGAGAATTGACAGTCGGAGAAACATTGAACTTCTCTGCAAGATGCCAAGGGGTCGGAGACCGTTATGAGATCCTAGTAGAGTTAAGTAGACGAGAGAAAGAAGAGAATATTAAGCCGGATGCAGACATAGATATCTACATGAAGGCAGTGACATCAGAAAGCCAGAGGGCGCAAGTGGTGACAGATTATATACTAAAGATTTTGGGATTAGATGTATGTGCAGATACCATGGTTGGGGATGACTTAATAAGGGGCATCTCCGGCGGACAAAAGAAACGAGTCACAACTGGTGAGATGCTGGTTGGACCAGCTAAGGCGTTATTCATGGATGAAATATCTACGGGTTTGGATAGTTCCACAACATATCAAATCGTGAATACGATCAAGCAATATGTTCACATTCTGAATGGCACCGCATTCATCTCACTGCTGCAACCAGCACCGGAGACTTATGAACTGTTTGATGACATTGTTCTCCTTTCCGATGGTCACATTGTGTACCAAGGTCCTCGCGAAAATGTTCTTGAATTTTTTGAATCCATGGGGTTCAGATGTCCCGAGAGGAAAGGCGTGGCAGACTTCCTGCAAGAAGTGACATCAAGGAAGGATCAGGAGCAGTATTGGGCAAGCAGAGATGAGCCTTACAGGTTCATTACGGTAGAAGAATTTGTCGAGGCATTCCAATCATTCCATGTCGGACGCAAACTTACAGATGAACTCGCAATTCCATTTGACAAGGCCAAGAGCCACCCAGCTGCATTAACAACAAAAAAGTATGGCGTTAGTAGAACTGAACTGTTGAAAGCTTGCTTTGAAAGGGAGTTCTTGCTCATGAAGAGGAACTCATTTGTCTACATTTTCAAGCTTGCCCAACTCTCAATCATGGCTATGATTACAATGACATTGTTCCTACGAACTGAGATGCATCACAATTCAGTAGCTGACGGGGTAGTTTATACCGGTGCTTTGTTCTTCTCCCTGGTTGCTGTTATGTTCAATGGAATGGCAGATCTTTCGATGACTGTTACAAGGCTCCCTGTATTTTATAAGCAGAGAAACCTCCTCTTCTTTCCACCGTGGGCATATGCCATTCCCACGTGGATCCTAAAGATCCCTATCACCTGCGTTGAAGTTGCGGTTTGGGTATTTACCACCTATTATGTCATCGGATACGATCCAAATGTTGGAAGGTTGTTCAAGCAATTCTTTCTACTCTTTCTCATCAATCAGATGGCTTCAGGGATGTTCCGATTCATTGCTGGAGTTGGTAGAACCATGACTATTGCCAACACAATTGGATCATTTGCTCTTCTCGTGCTTTTCGCCCTGGGTGGTTTTGTCCTGTCAAGAGAGGATATAAAGAAATGGTGGATATGGGGCTACTGGACTTCGCCTTTGATGTACGGACAGAATGCAATAGTAGTCAATGAGTTCCTCGGAAAGAGTTGGAGACATGTTCTTCCGAACTCAACGGAACCATTAGGAGTCGCTGTTCTGAAGTCGCGGGGATTCTTCACAGAGCCTTATTGGTATTGGATTGGCGCGGGAGTATTGGCTGGATACATGCTTATATTCAACATTTTTTTCACTTTGGCTCTCACATATCTAAAGCCAATTGGGAAGCCACAGGCTGTTGAGTTGGAAGATCTTACCTCAACTCCTCAAATTAGTAGAGAAAATAGAGATGGAAGTAACTCCTCCAGGTCCTCCTCAGTTACAAAAGAAGCTACTAATGACACAAATGGTAACAAGAAAAGAGGAATGGTTCTTCCGTTCGAACCACATTCCATCACCTTTGATGAAATCACATACTCCGTGGACATGCCACAGGAAATGAAGAACCAAGGTGTTCCCGAGGATAAACTGGTGCTCCTTAGGCGCGTGAGTGGTGCTTTTAGGCCAGGTGTTTTGACAGCTCTAATGGGAGTGAGTGGGGCTGGTAAAACAACTCTAATGGACGTACTGGCTGGTAGAAAAACTGGTGGATATATTGAGGGAAATATCACAATTTCCGGGTACCCAAAAAAGCAAGAATCGTTTGCACGGATTTCTGGATATTGTGAGCAGAATGACATCCACTCTCCTTATGTTACTATCTTTGAATCATTGATGTACTCGGCATGGCTGCGTTTATCTTCAGAAATCAATTCTGAAACCAGGAAGATGTTTGTTGAGGAAGTGATGCGCCTTGTGGAGCTGAATCCGTTGAGGCAAGCATTGGTAGGGTTACCTGGTGCGAGCGGTCTTTCAACTGAGCAGCGTAAGAGGCTGACCATTGCAGTTGAACTAGTGGCTAACCCCTCCATAATATTCATGGATGAACCGACTTCAGGCTTGGATGCAAGAGCTGCGGCCATTGTTATGAGAGCAGTTAGGAACACCGTTGACACTGGAAGAACAGTCGTCTGCACCATCCATCAGCCAAGCATTGACATATTTGACGCTTTTGATGAGCTATTCCTACTGAAGAAAGGAGGACAAGAGATCTACGTGGGGCCATTAGGCCGCCATTGTTGCAATTTGATCAAGTACTTCGAGGGGATCGATAACGTCAGTAAAATTAGGGATGGCTACAATCCAGCAACATGGATGTTGGAAGTCACTTCGTCAGCCAAAGAAATAGCTATGGAGATTGATTTTGCTGAAGTGTATAAGAATTCAGAACTGTACAGGAGAAACAAAGCACTTATTAAAGAACTAAGCACCCCTGCTCCTGGTTCCAAGGATCTCCATTTCCCTTCTCAATACTCTCAGCCATTTTTAACCCAATGCATAGCTTGCTTATGGAAACAACATTGGTCCTATTGGCGCAATACGCAGTACACAGCCATCAGGTTGATCTACACAACCTTTGTAGCATTGATGTTTGGGACAATGTTCTGGAACCTTGGCTCCAAAACAAAAAAGCAAAAGGATCTCTTCAATGCAATTGGTTCGATGTACGCTGCTGTTCTCTTTCTCGGTATCAAAAATTGTACAACTGTGCAGCCCGTTGTGGATGTCGAAAGAACAGTCTTCTACAGAGAACGAGCTGCTGGAATGTATTCTGCCTTGGCATACGCCTTTGCGCAGGTTACAATTGAGATCCCGTATGTTTTTGTACAAGCTCTTTTCTACAGTGTCATAGTTTACGCAACGATTGGGTTTGAATGGACTGTGGCTAAATTCTTGTGGTACCTATTCTTCATGTACTTCACATTTTTGTACTTCACCTACTATGGCATGATGGGTGTGGCCTTGACGCCGGACCAGCACATTGCCGCTATAAGTTCCAGCTCGTTTTACGCAATATGGAATCTCTTCTCAGGGTTCATCATCCCACGAACTAGGATTCCTGTATGGTGGAGGTGGTACTACTGGGCGTGCCCAATGGCTTGGACCTTGTACGGACTGGCTACATCGCAGTTTGGAGATATACAGGACAAGCTTGAGACGGGTGAAACGGTGGAAGAATTCATGAGGCAATACTTCGGCTTCAAGCAAGAATTTATCGGAGTGGTTGCAGCTGTGGTTGTTGGATTCACTCTACTCTTTGCACTCATCTTTGCCTTGTCCATCAAGAAGTTGAGCTTCCAGAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1434

Amino Acids

162.11

Weight (kDa)

8.19

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 94 - 143 3.4e-07 ABC-transporter N-terminal
ABC_tran PF00005 169 - 350 1.9e-13 ABC transporter
ABC2_membrane_7 PF19055 384 - 435 4.8e-06 ABC-2 type transporter
ABC2_membrane PF01061 505 - 717 4.1e-50 ABC-2 type transporter
PDR_assoc PF08370 722 - 784 4.3e-29 Plant PDR ABC transporter associated
ABC_tran PF00005 864 - 1016 1e-19 ABC transporter
ABC2_membrane PF01061 1161 - 1375 8.8e-60 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1764
AarI CACCTGC 1 cut(s) 1847
Acc16I TGCGCA 1 cut(s) 3786
Acc36I ACCTGC 2 cut(s) 1847, 3778
Acc65I GGTACC 2 cut(s) 2733, 3891
AccB1I GGYRCC 3 cut(s) 1127, 2733, 3891
AccB7I CCANNNNNTGG 1 cut(s) 1901
AccBSI CCGCTC 2 cut(s) 262, 2958
AccI GTMKAC 2 cut(s) 805, 1569
AccII CGCG 5 cut(s) 103, 1230, 2221, 2261, 2598
AccIII TCCGGA 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 3069
AcsI RAATTY 8 cut(s) 296, 370, 1244, 1382, 3373, 3881, 4169, 4202
AcuI CTGAAG 8 cut(s) 128, 408, 1938, 2234, 2838, 3030, 3203, 3381
AcvI CACGTG 2 cut(s) 496, 1815
AcyI GRCGYC 1 cut(s) 3959
AdeI CACNNNGTG 1 cut(s) 1213
AfeI AGCGCT 1 cut(s) 167
AfiI CCNNNNNNNGG 6 cut(s) 147, 569, 951, 1901, 3047, 3431
AflIII ACRYGT 2 cut(s) 495, 2170
AgeI ACCGGT 1 cut(s) 1676
AhlI ACTAGT 1 cut(s) 3004
AjnI CCWGG 8 cut(s) 612, 1695, 2043, 2417, 2617, 2873, 2947, 3430
AloI GAACNNNNNNTCC 6 cut(s) 2193, 2225, 3593, 3625, 4033, 4065
Alw21I GWGCWC 1 cut(s) 2589
Alw26I GTCTC 5 cut(s) 301, 768, 1157, 2161, 4142
AlwNI CAGNNNCTG 1 cut(s) 1658
Ama87I CYCGRG 2 cut(s) 1274, 2570
Aor13HI TCCGGA 1 cut(s) 569
Aor51HI AGCGCT 1 cut(s) 167
ApoI RAATTY 8 cut(s) 296, 370, 1244, 1382, 3373, 3881, 4169, 4202
ArsI GACNNNNNNTTYG 6 cut(s) 83, 115, 2095, 2127, 3714, 3746
AsiGI ACCGGT 1 cut(s) 1676
Asp700I GAANNNNTTC 4 cut(s) 52, 1236, 3760, 4016
Asp718I GGTACC 2 cut(s) 2733, 3891
AspLEI GCGC 7 cut(s) 168, 889, 2261, 2598, 2904, 3528, 3787
AspS9I GGNCC 8 cut(s) 557, 1022, 1223, 2421, 3212, 3516, 3964, 4095
AsuC2I CCSGG 1 cut(s) 2731
AsuHPI GGTGA 6 cut(s) 907, 1019, 1828, 2500, 3919, 4166
AsuII TTCGAA 1 cut(s) 2493
AvaI CYCGRG 2 cut(s) 1274, 2570
AvaII GGWCC 7 cut(s) 557, 1022, 1223, 2421, 3516, 3964, 4095
AxyI CCTNAGG 1 cut(s) 2591
BaeGI GKGCMC 1 cut(s) 4085
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BamHI GGATCC 1 cut(s) 1818
BanI GGYRCC 3 cut(s) 1127, 2733, 3891
BarI GAAGNNNNNNTAC 2 cut(s) 3884, 3916
BauI CACGAG 1 cut(s) 2030
BbrPI CACGTG 2 cut(s) 496, 1815
BbsI GAAGAC 2 cut(s) 87, 3724
Bbv12I GWGCWC 1 cut(s) 2589
BbvCI CCTCAGC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 670
BcgI CGANNNNNNTGC 4 cut(s) 1713, 1747, 3633, 3667
BciT130I CCWGG 8 cut(s) 614, 1697, 2045, 2419, 2619, 2875, 2949, 3432
BciVI GTATCC 2 cut(s) 1880, 2270
BclI TGATCA 1 cut(s) 3240
BcnI CCSGG 1 cut(s) 2731
BcoDI GTCTC 5 cut(s) 301, 768, 1157, 2161, 4142
BcuI ACTAGT 1 cut(s) 3004
BfaI CTAG 5 cut(s) 480, 564, 791, 3005, 4044
BfmI CTRYAG 2 cut(s) 3736, 3832
BfoI RGCGCY 1 cut(s) 169
BfuAI ACCTGC 2 cut(s) 1847, 3778
BfuI GTATCC 2 cut(s) 1880, 2270
BglII AGATCT 3 cut(s) 1726, 2362, 3201
BmcAI AGTACT 1 cut(s) 3248
Bme1390I CCNGG 9 cut(s) 614, 1697, 2045, 2419, 2619, 2731, 2875, 2949, 3432
Bme18I GGWCC 7 cut(s) 557, 1022, 1223, 2421, 3516, 3964, 4095
BmeT110I CYCGRG 2 cut(s) 1274, 2570
BmgT120I GGNCC 8 cut(s) 557, 1022, 1223, 2421, 3212, 3516, 3964, 4095
BmrFI CCNGG 9 cut(s) 614, 1697, 2045, 2419, 2619, 2731, 2875, 2949, 3432
BmrI ACTGGG 1 cut(s) 4084
BmsI GCATC 8 cut(s) 749, 826, 981, 1002, 1629, 1651, 2889, 3046
BmuI ACTGGG 1 cut(s) 4084
BpiI GAAGAC 2 cut(s) 87, 3724
BpmI CTGGAG 2 cut(s) 1998, 2401
Bpu10I CCTNAGC 2 cut(s) 279, 1029
Bpu14I TTCGAA 1 cut(s) 2493
BpuEI CTTGAG 5 cut(s) 41, 180, 296, 641, 4166
BpuMI CCSGG 1 cut(s) 2731
Bsa29I ATCGAT 1 cut(s) 3261
BsaAI YACGTR 3 cut(s) 496, 1815, 3208
BsaBI GATNNNNATC 1 cut(s) 1832
BsaHI GRCGYC 1 cut(s) 3959
BsaI GGTCTC 1 cut(s) 768
BsaWI WCCGGW 3 cut(s) 569, 1159, 1676
Bsc4I CCNNNNNNNGG 6 cut(s) 147, 569, 951, 1901, 3047, 3431
Bse118I RCCGGY 1 cut(s) 1676
Bse1I ACTGG 8 cut(s) 1009, 2105, 2586, 2685, 2701, 3112, 4079, 4113
Bse21I CCTNAGG 1 cut(s) 2591
Bse3DI GCAATG 3 cut(s) 1971, 2991, 3972
Bse8I GATNNNNATC 1 cut(s) 1832
BseAI TCCGGA 1 cut(s) 569
BseBI CCWGG 8 cut(s) 614, 1697, 2045, 2419, 2619, 2875, 2949, 3432
BseCI ATCGAT 1 cut(s) 3261
BseJI GATNNNNATC 1 cut(s) 1832
BseLI CCNNNNNNNGG 6 cut(s) 147, 569, 951, 1901, 3047, 3431
BseMI GCAATG 3 cut(s) 1971, 2991, 3972
BseMII CTCAG 7 cut(s) 270, 689, 1626, 2442, 2961, 3482, 4035
BseNI ACTGG 8 cut(s) 1009, 2105, 2586, 2685, 2701, 3112, 4079, 4113
BseRI GAGGAG 7 cut(s) 120, 183, 296, 1769, 2367, 2404, 2416
BseSI GKGCMC 1 cut(s) 4085
BseYI CCCAGC 1 cut(s) 1468
BsgI GTGCAG 3 cut(s) 957, 3109, 3722
Bsh1236I CGCG 5 cut(s) 103, 1230, 2221, 2261, 2598
BshNI GGYRCC 3 cut(s) 1127, 2733, 3891
BshTI ACCGGT 1 cut(s) 1676
BshVI ATCGAT 1 cut(s) 3261
BsiHKAI GWGCWC 1 cut(s) 2589
BsiHKCI CYCGRG 2 cut(s) 1274, 2570
BsiSI CCGG 7 cut(s) 570, 833, 978, 1160, 1677, 2730, 3962
BslFI GGGAC 2 cut(s) 1257, 3601
BslI CCNNNNNNNGG 6 cut(s) 147, 569, 951, 1901, 3047, 3431
BsmAI GTCTC 5 cut(s) 301, 768, 1157, 2161, 4142
BsmBI CGTCTC 1 cut(s) 4142
BsmFI GGGAC 2 cut(s) 1257, 3601
BsmI GAATGC 3 cut(s) 1133, 1394, 2134
Bso31I GGTCTC 1 cut(s) 768
BsoBI CYCGRG 2 cut(s) 1274, 2570
Bsp119I TTCGAA 1 cut(s) 2493
Bsp1286I GDGCHC 2 cut(s) 2589, 4085
Bsp13I TCCGGA 1 cut(s) 569
Bsp1407I TGTACA 3 cut(s) 3384, 3692, 3817
Bsp19I CCATGG 2 cut(s) 945, 1257
Bsp68I TCGCGA 2 cut(s) 103, 1230
BspCNI CTCAG 7 cut(s) 271, 688, 1627, 2441, 2962, 3481, 4034
BspDI ATCGAT 1 cut(s) 3261
BspEI TCCGGA 1 cut(s) 569
BspFNI CGCG 5 cut(s) 103, 1230, 2221, 2261, 2598
BspHI TCATGA 3 cut(s) 289, 1548, 4173
BspMI ACCTGC 2 cut(s) 1847, 3778
BspQI GCTCTTC 1 cut(s) 2031
BspT104I TTCGAA 1 cut(s) 2493
BspT107I GGYRCC 3 cut(s) 1127, 2733, 3891
BspTNI GGTCTC 1 cut(s) 768
BsrBI CCGCTC 2 cut(s) 262, 2958
BsrDI GCAATG 3 cut(s) 1971, 2991, 3972
BsrFI RCCGGY 1 cut(s) 1676
BsrGI TGTACA 3 cut(s) 3384, 3692, 3817
BsrI ACTGG 8 cut(s) 1009, 2105, 2586, 2685, 2701, 3112, 4079, 4113
BssAI RCCGGY 1 cut(s) 1676
BssNI GRCGYC 1 cut(s) 3959
BssSI CACGAG 1 cut(s) 2030
BssT1I CCWWGG 8 cut(s) 763, 945, 1219, 1257, 2560, 3438, 3604, 3768
Bst2BI CACGAG 1 cut(s) 2030
Bst2UI CCWGG 8 cut(s) 614, 1697, 2045, 2419, 2619, 2875, 2949, 3432
Bst6I CTCTTC 8 cut(s) 242, 628, 813, 1547, 1787, 2031, 3641, 4022
BstACI GRCGYC 1 cut(s) 3959
BstAPI GCANNNNNTGC 2 cut(s) 3065, 3495
BstAUI TGTACA 3 cut(s) 3384, 3692, 3817
BstBAI YACGTR 3 cut(s) 496, 1815, 3208
BstBI TTCGAA 1 cut(s) 2493
BstDSI CCRYGG 4 cut(s) 945, 1257, 1793, 2532
BstEII GGTNACC 1 cut(s) 2943
BstFNI CGCG 5 cut(s) 103, 1230, 2221, 2261, 2598
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 7 cut(s) 168, 889, 2261, 2598, 2904, 3528, 3787
BstMAI GTCTC 5 cut(s) 301, 768, 1157, 2161, 4142
BstMWI GCNNNNNNNGC 9 cut(s) 389, 978, 2593, 2983, 3065, 3231, 3495, 3532, 3967
BstNI CCWGG 8 cut(s) 614, 1697, 2045, 2419, 2619, 2875, 2949, 3432
BstNSI RCATGY 4 cut(s) 661, 2174, 2284, 2542
BstPI GGTNACC 1 cut(s) 2943
BstSCI CCNGG 9 cut(s) 612, 1695, 2043, 2417, 2617, 2729, 2873, 2947, 3430
BstSFI CTRYAG 2 cut(s) 3736, 3832
BstSLI GKGCMC 1 cut(s) 4085
BstUI CGCG 5 cut(s) 103, 1230, 2221, 2261, 2598
BstV2I GAAGAC 2 cut(s) 87, 3724
BstXI CCANNNNNNTGG 2 cut(s) 3303, 4092
Bsu15I ATCGAT 1 cut(s) 3261
Bsu36I CCTNAGG 1 cut(s) 2591
BsuI GTATCC 2 cut(s) 1880, 2270
BsuTUI ATCGAT 1 cut(s) 3261
BtgI CCRYGG 4 cut(s) 945, 1257, 1793, 2532
BtgZI GCGATG 2 cut(s) 93, 4101
BtsI GCAGTG 4 cut(s) 417, 545, 870, 1142
BtsIMutI CAGTG 6 cut(s) 417, 545, 870, 1142, 3105, 3841
BtuMI TCGCGA 2 cut(s) 103, 1230
BveI ACCTGC 2 cut(s) 1847, 3778
CaiI CAGNNNCTG 1 cut(s) 1658
CciI TCATGA 3 cut(s) 289, 1548, 4173
CfoI GCGC 7 cut(s) 168, 889, 2261, 2598, 2904, 3528, 3787
Cfr10I RCCGGY 1 cut(s) 1676
Cfr13I GGNCC 8 cut(s) 557, 1022, 1223, 2421, 3212, 3516, 3964, 4095
ClaI ATCGAT 1 cut(s) 3261
CseI GACGC 3 cut(s) 1425, 3167, 3967
CsiI ACCWGGT 1 cut(s) 2947
CspAI ACCGGT 1 cut(s) 1676
DraI TTTAAA 1 cut(s) 426
DraIII CACNNNGTG 1 cut(s) 1213
EaeI YGGCCR 1 cut(s) 3069
Eam1104I CTCTTC 8 cut(s) 242, 628, 813, 1547, 1787, 2031, 3641, 4022
EarI CTCTTC 8 cut(s) 242, 628, 813, 1547, 1787, 2031, 3641, 4022
EciI GGCGGA 1 cut(s) 996
Eco130I CCWWGG 8 cut(s) 763, 945, 1219, 1257, 2560, 3438, 3604, 3768
Eco147I AGGCCT 2 cut(s) 180, 532
Eco31I GGTCTC 1 cut(s) 768
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 7 cut(s) 557, 1022, 1223, 2421, 3516, 3964, 4095
Eco47III AGCGCT 1 cut(s) 167
Eco57I CTGAAG 8 cut(s) 128, 408, 1938, 2234, 2838, 3030, 3203, 3381
Eco72I CACGTG 2 cut(s) 496, 1815
Eco81I CCTNAGG 1 cut(s) 2591
Eco88I CYCGRG 2 cut(s) 1274, 2570
Eco91I GGTNACC 1 cut(s) 2943
EcoO109I RGGNCCY 3 cut(s) 557, 1223, 2421
EcoO65I GGTNACC 1 cut(s) 2943
EcoRI GAATTC 2 cut(s) 3373, 4169
EcoRII CCWGG 8 cut(s) 612, 1695, 2043, 2417, 2617, 2873, 2947, 3430
EcoRV GATATC 1 cut(s) 850
EcoT14I CCWWGG 8 cut(s) 763, 945, 1219, 1257, 2560, 3438, 3604, 3768
EcoT22I ATGCAT 3 cut(s) 663, 1644, 3491
ErhI CCWWGG 8 cut(s) 763, 945, 1219, 1257, 2560, 3438, 3604, 3768
Esp3I CGTCTC 1 cut(s) 4142
FalI AAGNNNNNCTT 5 cut(s) 1907, 1939, 3620, 3652, 4271
FaqI GGGAC 2 cut(s) 1257, 3601
FauI CCCGC 2 cut(s) 2214, 2254
FauNDI CATATG 1 cut(s) 1801
FbaI TGATCA 1 cut(s) 3240
FblI GTMKAC 2 cut(s) 805, 1569
FspBI CTAG 5 cut(s) 480, 564, 791, 3005, 4044
FspI TGCGCA 1 cut(s) 3786
GlaI GCGC 7 cut(s) 167, 888, 2260, 2597, 2903, 3527, 3786
GsaI CCCAGC 1 cut(s) 1472
GsuI CTGGAG 2 cut(s) 1998, 2401
HaeII RGCGCY 1 cut(s) 169
HapII CCGG 7 cut(s) 570, 833, 978, 1160, 1677, 2730, 3962
HgaI GACGC 3 cut(s) 1425, 3167, 3967
HhaI GCGC 7 cut(s) 168, 889, 2261, 2598, 2904, 3528, 3787
Hin1I GRCGYC 1 cut(s) 3959
Hin6I GCGC 7 cut(s) 166, 887, 2259, 2596, 2902, 3526, 3785
HinP1I GCGC 7 cut(s) 166, 887, 2259, 2596, 2902, 3526, 3785
HincII GTYRAC 2 cut(s) 67, 3103
HindII GTYRAC 2 cut(s) 67, 3103
HindIII AAGCTT 4 cut(s) 390, 1521, 1580, 4142
HpaII CCGG 7 cut(s) 570, 833, 978, 1160, 1677, 2730, 3962
HphI GGTGA 6 cut(s) 907, 1019, 1828, 2500, 3919, 4166
Hpy166II GTNNAC 9 cut(s) 67, 806, 1114, 1216, 1570, 2536, 3103, 3540, 3847
Hpy8I GTNNAC 9 cut(s) 67, 806, 1114, 1216, 1570, 2536, 3103, 3540, 3847
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 8 cut(s) 67, 152, 227, 476, 853, 1315, 1899, 3465
HpyCH4IV ACGT 6 cut(s) 495, 703, 1814, 2676, 3207, 3267
HpyF10VI GCNNNNNNNGC 9 cut(s) 389, 978, 2593, 2983, 3065, 3231, 3495, 3532, 3967
HpySE526I ACGT 6 cut(s) 495, 703, 1814, 2676, 3207, 3267
Hsp92I GRCGYC 1 cut(s) 3959
HspAI GCGC 7 cut(s) 166, 887, 2259, 2596, 2902, 3526, 3785
Kpn2I TCCGGA 1 cut(s) 569
KpnI GGTACC 2 cut(s) 2737, 3895
Ksp22I TGATCA 1 cut(s) 3240
LguI GCTCTTC 1 cut(s) 2031
LmnI GCTCC 6 cut(s) 1330, 1755, 2592, 2911, 3433, 3614
LweI GCATC 8 cut(s) 749, 826, 981, 1002, 1629, 1651, 2889, 3046
MabI ACCWGGT 1 cut(s) 2947
MaeI CTAG 5 cut(s) 480, 564, 791, 3005, 4044
MaeII ACGT 6 cut(s) 495, 703, 1814, 2676, 3207, 3267
MbiI CCGCTC 2 cut(s) 262, 2958
MfeI CAATTG 4 cut(s) 2010, 2331, 3645, 3795
MhlI GDGCHC 2 cut(s) 2589, 4085
MlyI GAGTC 3 cut(s) 303, 1005, 2211
Mph1103I ATGCAT 3 cut(s) 663, 1644, 3491
MroI TCCGGA 1 cut(s) 569
MroXI GAANNNNTTC 4 cut(s) 52, 1236, 3760, 4016
MseI TTAA 8 cut(s) 425, 438, 800, 828, 962, 1478, 3408, 3479
MslI CAYNNNNRTG 2 cut(s) 1604, 3077
MspA1I CMGCKG 3 cut(s) 386, 1472, 4223
MspI CCGG 7 cut(s) 570, 833, 978, 1160, 1677, 2730, 3962
MspR9I CCNGG 9 cut(s) 614, 1697, 2045, 2419, 2619, 2731, 2875, 2949, 3432
MunI CAATTG 4 cut(s) 2010, 2331, 3645, 3795
Mva1269I GAATGC 3 cut(s) 1133, 1394, 2134
MvaI CCWGG 8 cut(s) 614, 1697, 2045, 2419, 2619, 2875, 2949, 3432
MvnI CGCG 5 cut(s) 103, 1230, 2221, 2261, 2598
MwoI GCNNNNNNNGC 9 cut(s) 389, 978, 2593, 2983, 3065, 3231, 3495, 3532, 3967
NciI CCSGG 1 cut(s) 2731
NcoI CCATGG 2 cut(s) 945, 1257
NdeI CATATG 1 cut(s) 1801
NmeAIII GCCGAG 1 cut(s) 2813
NmuCI GTSAC 8 cut(s) 637, 650, 865, 895, 997, 1205, 1309, 3316
NruI TCGCGA 2 cut(s) 103, 1230
NsbI TGCGCA 1 cut(s) 3786
NsiI ATGCAT 3 cut(s) 663, 1644, 3491
NspI RCATGY 4 cut(s) 661, 2174, 2284, 2542
NspV TTCGAA 1 cut(s) 2493
PaeI GCATGC 1 cut(s) 661
PagI TCATGA 3 cut(s) 289, 1548, 4173
PaqCI CACCTGC 1 cut(s) 1847
PasI CCCWGGG 1 cut(s) 2044
PceI AGGCCT 2 cut(s) 180, 532
PciI ACATGT 1 cut(s) 2170
PciSI GCTCTTC 1 cut(s) 2031
PcsI WCGNNNNNNNCGW 1 cut(s) 3258
PctI GAATGC 3 cut(s) 1133, 1394, 2134
PdmI GAANNNNTTC 4 cut(s) 52, 1236, 3760, 4016
PflMI CCANNNNNTGG 1 cut(s) 1901
PinAI ACCGGT 1 cut(s) 1676
PleI GAGTC 3 cut(s) 303, 1004, 2210
PmaCI CACGTG 2 cut(s) 496, 1815
PmlI CACGTG 2 cut(s) 496, 1815
PpsI GAGTC 3 cut(s) 303, 1004, 2210
Ppu21I YACGTR 3 cut(s) 496, 1815, 3208
PpuMI RGGWCCY 3 cut(s) 557, 1223, 2421
PscI ACATGT 1 cut(s) 2170
PsiI TTATAA 1 cut(s) 1764
Psp5II RGGWCCY 3 cut(s) 557, 1223, 2421
Psp6I CCWGG 8 cut(s) 612, 1695, 2043, 2417, 2617, 2873, 2947, 3430
PspCI CACGTG 2 cut(s) 496, 1815
PspEI GGTNACC 1 cut(s) 2943
PspFI CCCAGC 1 cut(s) 1468
PspGI CCWGG 8 cut(s) 612, 1695, 2043, 2417, 2617, 2873, 2947, 3430
PspPI GGNCC 8 cut(s) 557, 1022, 1223, 2421, 3212, 3516, 3964, 4095
PspPPI RGGWCCY 3 cut(s) 557, 1223, 2421
PstNI CAGNNNCTG 1 cut(s) 1658
PvuII CAGCTG 3 cut(s) 386, 1472, 4223
RruI TCGCGA 2 cut(s) 103, 1230
RseI CAYNNNNRTG 2 cut(s) 1604, 3077
SapI GCTCTTC 1 cut(s) 2031
SaqAI TTAA 8 cut(s) 425, 438, 800, 828, 962, 1478, 3408, 3479
Sau96I GGNCC 8 cut(s) 557, 1022, 1223, 2421, 3212, 3516, 3964, 4095
ScaI AGTACT 1 cut(s) 3248
SchI GAGTC 3 cut(s) 303, 1005, 2211
ScrFI CCNGG 9 cut(s) 614, 1697, 2045, 2419, 2619, 2731, 2875, 2949, 3432
SduI GDGCHC 2 cut(s) 2589, 4085
SexAI ACCWGGT 1 cut(s) 2947
SfaNI GCATC 8 cut(s) 749, 826, 981, 1002, 1629, 1651, 2889, 3046
SfcI CTRYAG 2 cut(s) 3736, 3832
SfuI TTCGAA 1 cut(s) 2493
SinI GGWCC 7 cut(s) 557, 1022, 1223, 2421, 3516, 3964, 4095
SmiMI CAYNNNNRTG 2 cut(s) 1604, 3077
SmlI CTYRAG 5 cut(s) 20, 195, 311, 620, 4145
SmoI CTYRAG 5 cut(s) 20, 195, 311, 620, 4145
SpeI ACTAGT 1 cut(s) 3004
SphI GCATGC 1 cut(s) 661
SseBI AGGCCT 2 cut(s) 180, 532
SspI AATATT 2 cut(s) 826, 3027
SspMI CTAG 5 cut(s) 480, 564, 791, 3005, 4044
StuI AGGCCT 2 cut(s) 180, 532
StyD4I CCNGG 9 cut(s) 612, 1695, 2043, 2417, 2617, 2729, 2873, 2947, 3430
StyI CCWWGG 8 cut(s) 763, 945, 1219, 1257, 2560, 3438, 3604, 3768
TaiI ACGT 6 cut(s) 498, 706, 1817, 2679, 3210, 3270
TaqI TCGA 8 cut(s) 258, 1389, 1733, 2493, 3252, 3261, 3653, 3720
TatI WGTACW 8 cut(s) 2829, 3246, 3384, 3537, 3692, 3817, 3906, 3921
TauI GCSGC 4 cut(s) 321, 3071, 3225, 3980
Tru1I TTAA 8 cut(s) 425, 438, 800, 828, 962, 1478, 3408, 3479
Tru9I TTAA 8 cut(s) 425, 438, 800, 828, 962, 1478, 3408, 3479
TscAI CASTG 6 cut(s) 417, 552, 870, 1149, 3112, 3841
TseFI GTSAC 8 cut(s) 637, 650, 865, 895, 997, 1205, 1309, 3316
Tsp45I GTSAC 8 cut(s) 637, 650, 865, 895, 997, 1205, 1309, 3316
TspGWI ACGGA 7 cut(s) 2136, 2204, 2478, 2521, 2776, 2910, 4119
TspRI CASTG 6 cut(s) 417, 552, 870, 1149, 3112, 3841
Van91I CCANNNNNTGG 1 cut(s) 1901
VpaK11BI GGWCC 7 cut(s) 557, 1022, 1223, 2421, 3516, 3964, 4095
XapI RAATTY 8 cut(s) 296, 370, 1244, 1382, 3373, 3881, 4169, 4202
XceI RCATGY 4 cut(s) 661, 2174, 2284, 2542
XcmI CCANNNNNNNNNTGG 2 cut(s) 586, 3028
XmiI GTMKAC 2 cut(s) 805, 1569
XmnI GAANNNNTTC 4 cut(s) 52, 1236, 3760, 4016
XspI CTAG 5 cut(s) 480, 564, 791, 3005, 4044
ZrmI AGTACT 1 cut(s) 3248
Zsp2I ATGCAT 3 cut(s) 663, 1644, 3491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.