Rmu_sc0034560.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034560.1
OG0000843
Physical Location & Seq
Reverse (-)
1111 .. 2900
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034560.1_g000001.1.cds

Sequence Viewer

Length: 1185 bp
atggatgaaccaacgtcaggtctagatgcaagagcagctgcgatcgttatgagaacagttaggaacaccgtggacaccggaagaacagttgtgtgcaccattcatcagccaagcattgatatatttgaatcatttgatgagggaattgaaaatgtcagtaagattaaggatggctacaatccagcaacttggatgttggaagtgaccagttctgcgaaagaaatcgctctggggatcgattttgctgatgtgtacaaaaaatctgagctatacaggagaaacagaacacttattgaagaactgagcacccctcctccaggttcgaaggacctgtatttccctacacaatacgctcagccatttttaacacaatgcatggcctgtttatggaaacaacattggtcgtattggcgtaatccaccatacactgccataaagttgatatacacaaccatgctagccttgatgttggggacaatgttctgggaccttggctccaaaaagacaaaacaacaagatctcttcaatgtaattggttctatgtatgctacgcttctctttctcggtattaagaattcaacaacagttcagtccttagtgtctgtcgaacgaacagtcttttatagagaacgggctgctggaatgtattctccattagcttattcgtttgcacaggttgtaattgagctcccttatgtttttgctcaaacaattctctatggtgtcatagtttatgccatgattggattagagtggactactaaattcttatggtatctatttttcctgtttttcacattattgtacttcaccttctatggtatgatgggagtggccgttacaccaaaccttcacgttgctgctataactaccagtgcattttattcattatggaatcttttttccggcttcttaatcccacgaactaggattcctatatggtggagatggtactattgggtatgtccagtggcttggagcttgtatggattggccacatcacagtttggagattcacagaacaaccttgagacgggagaaactgtagaagaatttatgaggagctactttggtttcaaacatgaatttctaggagtggttgcagctgtggttgttggatttgcagtactctttgcatttatctttgccttggcaatcaagatgttgaacttccagaggagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

394

Amino Acids

45.3

Weight (kDa)

8.18

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 2 cut(s) 834, 993
AcsI RAATTY 4 cut(s) 574, 764, 1052, 1085
AfaI GTAC 4 cut(s) 254, 806, 953, 1128
AfiI CCNNNNNNNGG 4 cut(s) 17, 317, 387, 1033
AgsI TTSAA 7 cut(s) 128, 149, 296, 526, 579, 1078, 1168
AjnI CCWGG 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 916, 948
AluBI AGCT 7 cut(s) 38, 268, 659, 688, 981, 1065, 1106
AluI AGCT 7 cut(s) 38, 268, 659, 688, 981, 1065, 1106
Alw21I GWGCWC 3 cut(s) 98, 308, 690
Alw26I GTCTC 1 cut(s) 1025
Alw44I GTGCAC 1 cut(s) 94
AlwI GGATC 1 cut(s) 242
AoxI GGCC 3 cut(s) 378, 834, 993
ApaLI GTGCAC 1 cut(s) 94
ApeKI GCWGC 5 cut(s) 35, 38, 635, 860, 1103
ApoI RAATTY 4 cut(s) 574, 764, 1052, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 600, 632
Asp700I GAANNNNTTC 1 cut(s) 646
AspS9I GGNCC 2 cut(s) 328, 487
AsuHPI GGTGA 1 cut(s) 802
AsuII TTCGAA 1 cut(s) 323
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 2 cut(s) 328, 487
BaeGI GKGCMC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 995
BanII GRGCYC 1 cut(s) 690
BarI GAAGNNNNNNTAC 2 cut(s) 797, 829
Bbv12I GWGCWC 3 cut(s) 98, 308, 690
BbvI GCAGC 5 cut(s) 25, 47, 622, 847, 1115
BccI CCATC 3 cut(s) 164, 820, 942
BceAI ACGGC 1 cut(s) 821
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 1025
BfaI CTAG 4 cut(s) 23, 458, 927, 1091
BfmI CTRYAG 1 cut(s) 1044
BglII AGATCT 1 cut(s) 517
BisI GCNGC 5 cut(s) 36, 39, 636, 861, 1104
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 5 cut(s) 37, 40, 637, 862, 1105
BmcAI AGTACT 1 cut(s) 1128
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 328, 487
BmgT120I GGNCC 2 cut(s) 328, 487
BmiI GGNNCC 2 cut(s) 488, 496
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 16
BmtI GCTAGC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 1049
Bsa29I ATCGAT 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 69, 490, 1149
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 8 cut(s) 298, 328, 479, 509, 822, 852, 1029, 1059
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 317, 387, 1033
Bse1I ACTGG 3 cut(s) 207, 873, 968
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 69, 490, 1149
BseGI GGATG 3 cut(s) 10, 175, 198
BseLI CCNNNNNNNGG 4 cut(s) 17, 317, 387, 1033
BseMII CTCAG 3 cut(s) 255, 293, 368
BseNI ACTGG 3 cut(s) 207, 873, 968
BseRI GAGGAG 2 cut(s) 303, 1075
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 5 cut(s) 25, 47, 622, 847, 1115
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 380, 836, 995
BshVI ATCGAT 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 3 cut(s) 98, 308, 690
BsiSI CCGG 2 cut(s) 78, 906
BslFI GGGAC 2 cut(s) 487, 500
BslI CCNNNNNNNGG 4 cut(s) 17, 317, 387, 1033
BsmAI GTCTC 1 cut(s) 1025
BsmBI CGTCTC 1 cut(s) 1025
BsmFI GGGAC 2 cut(s) 487, 500
BsnI GGCC 3 cut(s) 380, 836, 995
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 98, 308, 690
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 3 cut(s) 42, 234, 517
Bsp1720I GCTNAGC 1 cut(s) 354
BspANI GGCC 3 cut(s) 380, 836, 995
BspCNI CTCAG 3 cut(s) 256, 294, 367
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 488, 496
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 3 cut(s) 207, 873, 968
BssECI CCNNGG 3 cut(s) 69, 490, 1149
BssMI GATC 3 cut(s) 42, 234, 517
BssT1I CCWWGG 2 cut(s) 490, 1149
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 7 cut(s) 58, 70, 88, 586, 616, 1005, 1045
Bst6I CTCTTC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 4 cut(s) 264, 302, 354, 595
BstDSI CCRYGG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 3 cut(s) 10, 175, 198
BstKTI GATC 3 cut(s) 45, 237, 520
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 3 cut(s) 42, 234, 517
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 1044
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 5 cut(s) 25, 47, 622, 847, 1115
BstX2I RGATCY 1 cut(s) 517
BstXI CCANNNNNNTGG 2 cut(s) 189, 975
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 3 cut(s) 380, 836, 995
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 10, 175, 198
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 426, 880, 975
Cac8I GCNNGC 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 328, 487
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 4 cut(s) 253, 805, 952, 1127
CviAII CATG 4 cut(s) 376, 454, 739, 1082
CviQI GTAC 4 cut(s) 253, 805, 952, 1127
DdeI CTNAG 4 cut(s) 264, 302, 354, 595
DpnI GATC 3 cut(s) 44, 236, 519
DpnII GATC 3 cut(s) 42, 234, 517
EaeI YGGCCR 2 cut(s) 834, 993
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 2 cut(s) 490, 1149
Eco24I GRGCYC 1 cut(s) 690
Eco47I GGWCC 2 cut(s) 328, 487
Eco53kI GAGCTC 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 688
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoO109I RGGNCCY 2 cut(s) 328, 487
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 490, 1149
EcoT22I ATGCAT 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 2 cut(s) 490, 1149
Esp3I CGTCTC 1 cut(s) 1025
FaeI CATG 4 cut(s) 379, 457, 742, 1085
FaqI GGGAC 2 cut(s) 487, 500
FatI CATG 4 cut(s) 375, 453, 738, 1081
Fnu4HI GCNGC 5 cut(s) 36, 39, 636, 861, 1104
FokI GGATG 3 cut(s) 17, 182, 205
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 5 cut(s) 36, 39, 636, 861, 1104
FspBI CTAG 4 cut(s) 23, 458, 927, 1091
GluI GCNGC 5 cut(s) 36, 39, 636, 861, 1104
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 3 cut(s) 380, 836, 995
HapII CCGG 2 cut(s) 78, 906
Hin1II CATG 4 cut(s) 379, 457, 742, 1085
HinfI GANTC 4 cut(s) 128, 895, 931, 1013
HpaII CCGG 2 cut(s) 78, 906
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 4 cut(s) 73, 96, 253, 756
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 23, 1159, 1174
Hpy8I GTNNAC 4 cut(s) 73, 96, 253, 756
HpyAV CCTTC 3 cut(s) 319, 823, 860
HpyCH4III ACNGT 7 cut(s) 58, 70, 88, 586, 616, 1005, 1045
HpyCH4IV ACGT 2 cut(s) 14, 855
HpyCH4V TGCA 8 cut(s) 29, 96, 375, 671, 878, 1103, 1124, 1136
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 4 cut(s) 264, 302, 354, 595
HpySE526I ACGT 2 cut(s) 14, 855
Hsp92II CATG 4 cut(s) 379, 457, 742, 1085
Kzo9I GATC 3 cut(s) 42, 234, 517
LmnI GCTCC 4 cut(s) 500, 693, 978, 1062
Lsp1109I GCAGC 5 cut(s) 25, 47, 622, 847, 1115
LweI GCATC 1 cut(s) 16
MaeI CTAG 4 cut(s) 23, 458, 927, 1091
MaeII ACGT 2 cut(s) 14, 855
MaeIII GTNAC 2 cut(s) 202, 838
MalI GATC 3 cut(s) 44, 236, 519
MboI GATC 3 cut(s) 42, 234, 517
MboII GAAGA 4 cut(s) 93, 308, 514, 1061
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 3 cut(s) 98, 308, 690
MlsI TGGCCA 1 cut(s) 995
MluCI AATT 8 cut(s) 144, 531, 574, 681, 711, 764, 1052, 1085
MluNI TGGCCA 1 cut(s) 995
MmeI TCCRAC 2 cut(s) 177, 1096
MnlI CCTC 5 cut(s) 133, 321, 324, 1053, 1170
Mox20I TGGCCA 1 cut(s) 995
Mph1103I ATGCAT 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 646
MscI TGGCCA 1 cut(s) 995
MseI TTAA 4 cut(s) 165, 365, 570, 914
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 995
MspA1I CMGCKG 2 cut(s) 38, 1106
MspI CCGG 2 cut(s) 78, 906
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 3 cut(s) 42, 234, 517
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 4 cut(s) 379, 457, 742, 1085
NlaIV GGNNCC 2 cut(s) 488, 496
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 377
NspV TTCGAA 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 646
PfeI GAWTC 4 cut(s) 128, 895, 931, 1013
PkrI GCNGC 5 cut(s) 37, 40, 637, 862, 1105
Ple19I CGATCG 1 cut(s) 45
PpuMI RGGWCCY 2 cut(s) 328, 487
Psp124BI GAGCTC 1 cut(s) 690
Psp5II RGGWCCY 2 cut(s) 328, 487
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 488, 496
PspPI GGNCC 2 cut(s) 328, 487
PspPPI RGGWCCY 2 cut(s) 328, 487
PsuI RGATCY 1 cut(s) 517
PvuI CGATCG 1 cut(s) 45
PvuII CAGCTG 2 cut(s) 38, 1106
RsaI GTAC 4 cut(s) 254, 806, 953, 1128
RsaNI GTAC 4 cut(s) 253, 805, 952, 1127
RseI CAYNNNNRTG 1 cut(s) 452
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 4 cut(s) 165, 365, 570, 914
SatI GCNGC 5 cut(s) 36, 39, 636, 861, 1104
Sau3AI GATC 3 cut(s) 42, 234, 517
Sau96I GGNCC 2 cut(s) 328, 487
ScaI AGTACT 1 cut(s) 1128
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 3 cut(s) 98, 308, 690
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 1044
SfuI TTCGAA 1 cut(s) 323
SinI GGWCC 2 cut(s) 328, 487
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 8 cut(s) 144, 531, 574, 681, 711, 764, 1052, 1085
SspMI CTAG 4 cut(s) 23, 458, 927, 1091
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 490, 1149
TaaI ACNGT 7 cut(s) 58, 70, 88, 586, 616, 1005, 1045
TaiI ACGT 2 cut(s) 17, 858
TaqI TCGA 3 cut(s) 237, 323, 606
TasI AATT 8 cut(s) 144, 531, 574, 681, 711, 764, 1052, 1085
TatI WGTACW 3 cut(s) 252, 804, 1126
TfiI GAWTC 4 cut(s) 128, 895, 931, 1013
Tru1I TTAA 4 cut(s) 165, 365, 570, 914
Tru9I TTAA 4 cut(s) 165, 365, 570, 914
TscAI CASTG 3 cut(s) 433, 880, 975
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 5 cut(s) 35, 38, 635, 860, 1103
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 4 cut(s) 21, 92, 876, 1098
TspRI CASTG 3 cut(s) 433, 880, 975
VneI GTGCAC 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 328, 487
XagI CCTNNNNNAGG 1 cut(s) 315
XapI RAATTY 4 cut(s) 574, 764, 1052, 1085
XbaI TCTAGA 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 646
XspI CTAG 4 cut(s) 23, 458, 927, 1091
ZrmI AGTACT 1 cut(s) 1128
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.