Rmu_sc0040712.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040712.1
OG0000843
Physical Location & Seq
Forward (+)
1 .. 1357
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040712.1_g000001.1.cds

Sequence Viewer

Length: 996 bp
attttgggattggatggctgtgcagataccttggtaggggatcaaatgataaggggtatatctggaggacaaaagaagcgtgtcacaactggtgagatgttggttggacctgctaaggcactattcatggacgaaatatcgactggtttggatagttcaacaacttatcaaatagtaaattcaatcaagcaatctgttcacattctccaagggactgctttcatctcactgctgcagccagcacctgagacttatgatctatttgatgacattattcttctttctgaaggtcaaattgtgtaccaaggtccccgtgaatatgttcttgactttttcgaatccatgggcttcagatgtcccgagagaaaaggtgtggccgattttctgcaagaagtgacatcaaagaaagatcaggagcagtattggggaagcagagatgagccttacaggttcatcacagtccaagaattctcggaggcattccaatcttttcatgtagggggcacaattacgaatgaacttgcaactccatttgacaagaccaagagtcacccagctgcattatcaaccaatacatatggtgttaaaaaagcagaactggtgaaagcttgtctctcaagggagttcttgctgatgaagaggaactcatttgtttaccttttcaagcttacccaacaatcaatattgtctctgattacaatgacactattcctaaggactaagatgcaccatgacacagtgattaatggaggactttatgctggtgctttgttcttctccttgtatactgttgtgctcaatgcagtggcagagatatcgatgactgtagcgaagcttccagttttttttaagcaaagaaagctactcttttttccaccatgggcatatgcacttcccacgtggatcctcaagatccctctcacctgtgttgaagttggtgtttgggtatttatttcctattatgtcattggatatgatccaaatgttggaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

331

Amino Acids

37.21

Weight (kDa)

6.6

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
AccB7I CCANNNNNTGG 1 cut(s) 986
AccI GTMKAC 1 cut(s) 785
AclWI GGATC 5 cut(s) 48, 898, 907, 911, 971
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 2 cut(s) 178, 467
AcuI CTGAAG 2 cut(s) 306, 334
AcvI CACGTG 1 cut(s) 900
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 36, 986
AgsI TTSAA 4 cut(s) 159, 183, 664, 932
AhdI GACNNNNNGTC 1 cut(s) 546
AluBI AGCT 5 cut(s) 557, 608, 667, 835, 862
AluI AGCT 5 cut(s) 557, 608, 667, 835, 862
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 3 cut(s) 242, 617, 693
AlwI GGATC 5 cut(s) 48, 898, 907, 911, 971
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 232, 235, 557
ApoI RAATTY 2 cut(s) 178, 467
AseI ATTAAT 1 cut(s) 744
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 107, 308
AsuHPI GGTGA 4 cut(s) 104, 542, 613, 913
AsuII TTCGAA 1 cut(s) 336
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 107, 308
AxyI CCTNAGG 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 506
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BamHI GGATCC 1 cut(s) 903
BarI GAAGNNNNNNTAC 2 cut(s) 819, 851
BbrPI CACGTG 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 219, 247, 544
BccI CCATC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 798, 832
BcoDI GTCTC 3 cut(s) 242, 617, 693
BfmI CTRYAG 2 cut(s) 233, 825
BfuAI ACCTGC 1 cut(s) 118
BisI GCNGC 3 cut(s) 233, 236, 558
BlsI GCNGC 3 cut(s) 234, 237, 559
Bme18I GGWCC 2 cut(s) 107, 308
BmeRI GACNNNNNGTC 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 107, 308
BmiI GGNNCC 2 cut(s) 310, 905
BmsI GCATC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 601, 893
Bsa29I ATCGAT 1 cut(s) 818
BsaAI YACGTR 1 cut(s) 900
BsaJI CCNNGG 5 cut(s) 30, 208, 304, 342, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 986
Bse1I ACTGG 4 cut(s) 94, 148, 603, 839
Bse21I CCTNAGG 1 cut(s) 713
BseCI ATCGAT 1 cut(s) 818
BseDI CCNNGG 5 cut(s) 30, 208, 304, 342, 878
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 36, 986
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 4 cut(s) 94, 148, 603, 839
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 3 cut(s) 219, 247, 544
BseYI CCCAGC 1 cut(s) 553
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 818
BsiHKAI GWGCWC 1 cut(s) 798
BsiHKCI CYCGRG 1 cut(s) 359
BslFI GGGAC 3 cut(s) 226, 294, 342
BslI CCNNNNNNNGG 2 cut(s) 36, 986
BsmAI GTCTC 3 cut(s) 242, 617, 693
BsmFI GGGAC 3 cut(s) 226, 294, 342
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 506, 798
Bsp143I GATC 6 cut(s) 40, 256, 409, 903, 912, 976
Bsp19I CCATGG 2 cut(s) 342, 878
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 818
BspLI GGNNCC 2 cut(s) 310, 905
BspMAI CTGCAG 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 5 cut(s) 48, 898, 907, 911, 971
BspT104I TTCGAA 1 cut(s) 336
BsrI ACTGG 4 cut(s) 94, 148, 603, 839
BssECI CCNNGG 5 cut(s) 30, 208, 304, 342, 878
BssMI GATC 6 cut(s) 40, 256, 409, 903, 912, 976
BssNAI GTATAC 1 cut(s) 786
BssT1I CCWWGG 5 cut(s) 30, 208, 304, 342, 878
Bst1107I GTATAC 1 cut(s) 786
Bst4CI ACNGT 4 cut(s) 460, 739, 790, 826
Bst6I CTCTTC 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 900
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 4 cut(s) 114, 246, 713, 720
BstDSI CCRYGG 2 cut(s) 342, 878
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 6 cut(s) 43, 259, 412, 906, 915, 979
BstMAI GTCTC 3 cut(s) 242, 617, 693
BstMBI GATC 6 cut(s) 40, 256, 409, 903, 912, 976
BstMWI GCNNNNNNNGC 1 cut(s) 859
BstSFI CTRYAG 2 cut(s) 233, 825
BstSLI GKGCMC 1 cut(s) 506
BstV1I GCAGC 3 cut(s) 219, 247, 544
BstX2I RGATCY 2 cut(s) 903, 912
BstYI RGATCY 2 cut(s) 903, 912
BstZ17I GTATAC 1 cut(s) 786
Bsu15I ATCGAT 1 cut(s) 818
Bsu36I CCTNAGG 1 cut(s) 713
BsuRI GGCC 1 cut(s) 377
BsuTUI ATCGAT 1 cut(s) 818
BtgI CCRYGG 2 cut(s) 342, 878
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 2 cut(s) 227, 810
BtsIMutI CAGTG 3 cut(s) 227, 744, 810
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 107, 308
ClaI ATCGAT 1 cut(s) 818
Csp6I GTAC 1 cut(s) 301
CviAII CATG 5 cut(s) 127, 343, 494, 731, 879
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 4 cut(s) 114, 246, 713, 720
DpnI GATC 6 cut(s) 42, 258, 411, 905, 914, 978
DpnII GATC 6 cut(s) 40, 256, 409, 903, 912, 976
DriI GACNNNNNGTC 1 cut(s) 546
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 632
Eam1105I GACNNNNNGTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 632
Eco130I CCWWGG 5 cut(s) 30, 208, 304, 342, 878
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 107, 308
Eco57I CTGAAG 2 cut(s) 306, 334
Eco72I CACGTG 1 cut(s) 900
Eco81I CCTNAGG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 467
EcoRV GATATC 1 cut(s) 816
EcoT14I CCWWGG 5 cut(s) 30, 208, 304, 342, 878
ErhI CCWWGG 5 cut(s) 30, 208, 304, 342, 878
FaeI CATG 5 cut(s) 130, 346, 497, 734, 882
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 3 cut(s) 226, 294, 342
FatI CATG 5 cut(s) 126, 342, 493, 730, 878
FauNDI CATATG 2 cut(s) 577, 886
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 3 cut(s) 233, 236, 558
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 3 cut(s) 233, 236, 558
GluI GCNGC 3 cut(s) 233, 236, 558
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 377
Hin1II CATG 5 cut(s) 130, 346, 497, 734, 882
HindIII AAGCTT 3 cut(s) 606, 665, 833
HinfI GANTC 2 cut(s) 338, 547
HphI GGTGA 4 cut(s) 104, 542, 613, 913
Hpy166II GTNNAC 4 cut(s) 199, 301, 655, 786
Hpy188I TCNGA 4 cut(s) 286, 353, 475, 693
Hpy188III TCNNGA 5 cut(s) 63, 326, 359, 413, 910
Hpy8I GTNNAC 4 cut(s) 199, 301, 655, 786
HpyAV CCTTC 2 cut(s) 281, 984
HpyCH4III ACNGT 4 cut(s) 460, 739, 790, 826
HpyCH4IV ACGT 1 cut(s) 899
HpyCH4V TGCA 8 cut(s) 23, 235, 388, 524, 560, 727, 803, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 859
HpyF3I CTNAG 4 cut(s) 114, 246, 713, 720
HpySE526I ACGT 1 cut(s) 899
Hsp92II CATG 5 cut(s) 130, 346, 497, 734, 882
Kzo9I GATC 6 cut(s) 40, 256, 409, 903, 912, 976
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 3 cut(s) 219, 247, 544
LweI GCATC 1 cut(s) 714
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 3 cut(s) 82, 394, 548
MalI GATC 6 cut(s) 42, 258, 411, 905, 914, 978
MboI GATC 6 cut(s) 40, 256, 409, 903, 912, 976
MboII GAAGA 3 cut(s) 269, 649, 766
MflI RGATCY 2 cut(s) 903, 912
MhlI GDGCHC 2 cut(s) 506, 798
MluCI AATT 4 cut(s) 178, 294, 467, 507
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 2 cut(s) 85, 967
MnlI CCTC 6 cut(s) 59, 469, 633, 743, 917, 927
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 3 cut(s) 585, 744, 849
MspA1I CMGCKG 1 cut(s) 557
Mva1269I GAATGC 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 859
NcoI CCATGG 2 cut(s) 342, 878
NdeI CATATG 2 cut(s) 577, 886
NdeII GATC 6 cut(s) 40, 256, 409, 903, 912, 976
NlaIII CATG 5 cut(s) 130, 346, 497, 734, 882
NlaIV GGNNCC 2 cut(s) 310, 905
NmuCI GTSAC 3 cut(s) 82, 394, 548
NspV TTCGAA 1 cut(s) 336
PctI GAATGC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 986
PkrI GCNGC 3 cut(s) 234, 237, 559
PleI GAGTC 1 cut(s) 555
PmaCI CACGTG 1 cut(s) 900
PmlI CACGTG 1 cut(s) 900
PpsI GAGTC 1 cut(s) 555
Ppu21I YACGTR 1 cut(s) 900
PpuMI RGGWCCY 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 308
PspCI CACGTG 1 cut(s) 900
PspFI CCCAGC 1 cut(s) 553
PspN4I GGNNCC 2 cut(s) 310, 905
PspPI GGNCC 2 cut(s) 107, 308
PspPPI RGGWCCY 1 cut(s) 308
PstI CTGCAG 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 903, 912
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 3 cut(s) 585, 744, 849
SatI GCNGC 3 cut(s) 233, 236, 558
Sau3AI GATC 6 cut(s) 40, 256, 409, 903, 912, 976
Sau96I GGNCC 2 cut(s) 107, 308
SchI GAGTC 1 cut(s) 556
SduI GDGCHC 2 cut(s) 506, 798
SfaNI GCATC 1 cut(s) 714
SfcI CTRYAG 2 cut(s) 233, 825
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 2 cut(s) 107, 308
SmlI CTYRAG 2 cut(s) 616, 908
SmoI CTYRAG 2 cut(s) 616, 908
Sse9I AATT 4 cut(s) 178, 294, 467, 507
SspI AATATT 1 cut(s) 684
StyI CCWWGG 5 cut(s) 30, 208, 304, 342, 878
TaaI ACNGT 4 cut(s) 460, 739, 790, 826
TaiI ACGT 1 cut(s) 902
TaqI TCGA 3 cut(s) 140, 336, 818
TasI AATT 4 cut(s) 178, 294, 467, 507
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 3 cut(s) 585, 744, 849
Tru9I TTAA 3 cut(s) 585, 744, 849
TscAI CASTG 3 cut(s) 234, 744, 810
TseFI GTSAC 3 cut(s) 82, 394, 548
TseI GCWGC 3 cut(s) 232, 235, 557
Tsp45I GTSAC 3 cut(s) 82, 394, 548
TspDTI ATGAA 6 cut(s) 115, 211, 442, 482, 531, 650
TspRI CASTG 3 cut(s) 234, 744, 810
Van91I CCANNNNNTGG 1 cut(s) 986
VpaK11BI GGWCC 2 cut(s) 107, 308
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 2 cut(s) 178, 467
XmiI GTMKAC 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.