Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000843

Physical Location & Seq

Genomic Coordinates Forward (+)

62587840 .. 62588266

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG432700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACCGTTTCCATCACCCCAAACTTGCAAGTAGCAGCCATATTCTCTGGAGCTTTTTATTCACTCTTCGATCTCTTCTCCAGTTTCTTCATTCCTAGACCAAGAATACCCAAGTGGTGGGTTTGGTATTACTGGATATGTCCAATAGCATGGACAGTGTATGGATTGATTGTGTCACAGTATGGTGATATCGAAGACACCATTAAAGCACCTGGGATACCACTTGACCCAACTGTAAAATGGTACTTGGAACACCATTATCGATTTGATACAAACTTCATTGGATCAGTGGCTGGAGTTCTAGTTGTCTTCACACTCTTGTTTGCTTTCATGTATGCTACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

115

Amino Acids

13.33

Weight (kDa)

6.0

Isoelectric Point (pI)

21.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 61	9.3e-14	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15520 AT1G15520
fragaria_vesca	FvH4_2g20300 FvH4_2g20300 FvH4_6g30730 FvH4_6g30730
malus_domestica	MD05G1187100.v1.1 MD09G1217300.v1.1 MD10G1175000.v1.1 MD17G1201000.v1.1
prunus_persica	Prupe.3G076400_v2.0.a1 Prupe.3G076400_v2.0.a1 Prupe.3G076500_v2.0.a1 Prupe.3G076600_v2.0.a1 Prupe.3G076800_v2.0.a1 Prupe.8G213800_v2.0.a1 Prupe.8G214000_v2.0.a1 Prupe.8G214000_v2.0.a1 Prupe.8G214100_v2.0.a1 Prupe.8G214400_v2.0.a1 Prupe.8G214400_v2.0.a1
pyrus_communis	pycom05g17170 pycom05g17180 pycom05g17210 pycom09g13430 pycom10g15080
rosa_chinensis	RchiOBHm_Chr1g0366191 RchiOBHm_Chr2g0105341 RchiOBHm_Chr2g0137121 RchiOBHm_Chr2g0140411 RchiOBHm_Chr5g0011781 RchiOBHm_Chr6g0286071 RchiOBHm_Chr6g0286401
rosa_laevigata	RLG00000008623 RLG00000012576 RLG00000012578 RLG00000019626 RLG00000034331
rosa_multiflora	Rmu_sc0000894.1_g000058 Rmu_sc0006044.1_g000015 Rmu_sc0009109.1_g000003 Rmu_sc0009414.1_g000001 Rmu_sc0034560.1_g000001 Rmu_sc0034561.1_g000001 Rmu_sc0040712.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107550 Rroxscaffold_7G00182370 Rroxscaffold_7G00182480
rosa_rugosa	Rorug02G0339000 Rorug02G0339100 Rorug03G0286900 Rorug05G0102000 Rorug06G0179200
rosa_samantha	Rh2AG387500 Rh2AG387600 Rh2CG374900 Rh2DG410400 Rh2DG432700 Rh4AG137700 Rh6BG294300 Rh6BG295400 Rh6CG295500 Rh6DG286000 Rh6DG287300
rosa_wichuraiana	Rw2G031760 Rw6G025070 Rw6G025150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AclWI	GGATC	1 cut(s)	292
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	7, 197
BbsI	GAAGAC	2 cut(s)	201, 301
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	96, 302
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	2 cut(s)	201, 301
BpmI	CTGGAG	3 cut(s)	64, 69, 315
Bsa29I	ATCGAT	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	81, 137
BseBI	CCWGG	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	81, 137
BseXI	GCAGC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	70, 284
BspDI	ATCGAT	1 cut(s)	262
BspPI	GGATC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	81, 137
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	70, 284
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	5 cut(s)	7, 157, 180, 235, 343
Bst6I	CTCTTC	2 cut(s)	71, 80
BstKTI	GATC	2 cut(s)	73, 287
BstMBI	GATC	2 cut(s)	70, 284
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	2 cut(s)	201, 301
BstXI	CCANNNNNNTGG	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	162, 294
CaiI	CAGNNNCTG	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	150, 331
CviJI	RGCY	3 cut(s)	38, 53, 293
CviKI_1	RGCY	3 cut(s)	38, 53, 293
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	2 cut(s)	72, 286
DpnII	GATC	2 cut(s)	70, 284
Eam1104I	CTCTTC	2 cut(s)	71, 80
EarI	CTCTTC	2 cut(s)	71, 80
Eco32I	GATATC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	2 cut(s)	153, 334
FaiI	YATR	8 cut(s)	41, 139, 151, 162, 183, 332, 336, 346
FatI	CATG	2 cut(s)	149, 330
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	96, 302
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	3 cut(s)	64, 69, 315
Hin1II	CATG	2 cut(s)	153, 334
HphI	GGTGA	2 cut(s)	7, 197
Hpy188III	TCNNGA	1 cut(s)	48
HpyCH4III	ACNGT	5 cut(s)	7, 157, 180, 235, 343
HpyCH4V	TGCA	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	153, 334
Kzo9I	GATC	2 cut(s)	70, 284
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	6 cut(s)	33, 94, 118, 198, 225, 279
Lsp1109I	GCAGC	1 cut(s)	47
MaeI	CTAG	2 cut(s)	96, 302
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	2 cut(s)	72, 286
MboI	GATC	2 cut(s)	70, 284
MboII	GAAGA	5 cut(s)	58, 67, 79, 206, 301
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	70, 284
NlaIII	CATG	2 cut(s)	153, 334
NmuCI	GTSAC	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	70, 284
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	2 cut(s)	55, 214
SspMI	CTAG	2 cut(s)	96, 302
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	5 cut(s)	7, 157, 180, 235, 343
TaqI	TCGA	3 cut(s)	69, 192, 262
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	162, 294
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	79, 268, 319
TspRI	CASTG	2 cut(s)	162, 294
Van91I	CCANNNNNTGG	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XspI	CTAG	2 cut(s)	96, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.