MD09G1217300.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
21710026 .. 21718666
8641 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1217300.v1.1.491

Sequence Viewer

Length: 4314 bp
ATGGAGAGCGGTGATATACATAGAGCCGGAAATGGTCGCCAATTAGGCAGTTCTTTGAGATGGATGAACAATGGTATGGAAGTTTTTTCGAGGTCTTCACGTGGAGAAGATGAAGAAGTTGCTCTTAAATGGGCAGCACTTGAGAAGCTTCCCACTTACAACCGTTTGAGGAAAGGTATACTCACTATGCCGGGTGGTGAAGCTAGTGAAATTGATATACCAAATCTTGGCTTCCAAGAAAGAAAGGAATTGATTGAGAGGTTCCTGAAAGGCAACGATGAGGACAACGAGAGGTTCTTGCTGAAGCTTAAGAATCGAATCGATAGGGTTGGAATTGTTCTTCCAACAATTGAAGTTCGATTTGAGCAGTTAAATATAGAAGCGGAAACTTATGTAGGCAGCAGAGCTTTGCCTACACTCTTTAACTTCTGTGTTAACATTATCGAGGACATCTTGATTGGTCTCCGTATTCTTTCAAGTAGAAAGACTCATCTGTCGATCCTCCACAATGTTAGCGGAATCATAAAGCCTAGCAGGATGACATTGCTATTGGGTCCTCCAAGTTCTGGTAAGACCACGCTCTTGTTGGCTTTGGCAGGAAAGCTGGATCCGGACCTAAAGCTTTCCGGAAGGGTGAGTTATAATGGGCATGGAATGAATGAATTTGTACCCCAAAGAACTGCTGCCTACATCGGTCAACATGACCTTCATATTGGAGAAATGACTGTAAGGGAAACCTTGGCCTTTTCTGCAAGATGCCAAGGGGTCGGAACACGTTATGATATGCTCTCAGAATTGTCCAGAAGAGAGAAAGAAGCTAATATCAAGCCTGATCCAGTCATTGATGTCTTCATGAAGGCAATATCAACAGAAGGGCAGGAGGTGAACGTCGTGACAGATTACATTCTAAAGATTCTGGGACTGGAAGTCTGTGCTGATACCATAGTAGGGGATGAAATGTTAAGAGGCATCTCTGGAGGACAAAAAAAGCGTGTCACAACAGGTGAGATGCTTGTTGGACCTGCGAGGGCATTGTTCATGGACGAGATATCTACTGGTTTGGACAGCTCAACGACATTTCAAATTGTGAATTCAATCAAGCAATGCATTCACATTCTTAATGGAACGGCAGTCATCTCACTCCTACAGCCAGCACCAGAGACTTACGATCTTTTTGATGATATTATCCTCCTCTCGGATGGGCAGATTGTGTACCAGGGTCCCCGCGAACATGTGCTTGAGTTTTTTGAATCTATGGGGTTCAAATGTCCTGAGAGGAAAGCCATTGCTGACTTCCTACAAGAGGTGACATCAAGGAAAGACCAGGAGCAGTATTGGGTACGGAAAGATGAACCCTACAGTTTCATAACAGTTAGGGAATTTTCGGTGGCATTTCAATCATTCCTTGTGGGACAGAAACTTGGAGATGAATTGTCCATTCCATTCGACAAGAGCAGAAACCACCCGGCAGCTTTGACAATCAAAGAGTATGGTCTTAAAAAAGGAGAACTGTTGAAAGCTTGCTTCTCAAGAGAATATTTGCTCATAAAGAGGAATTCCTTTGTCTACGTCTTCAGGCTGACTCAATTGATAGTCATGGCTCTGATCACCATGACAATCTTCCTACGAACAAAGATGCCCCGTGATTCAGTAGATGATGGAGGAGTTTATATGGGTGCTTTGTTCTTCTCAGTGGTCATGGTGATGTTCAATGGGATGGCAGAGCTTTCGATGACCATTATGAAGCTTCCCGTCGTTTATAAGCAAAGAGACCTCCTATTCTTCCCTGCATGGGCATTTGCTCTTCCAACATGGATTCTCAAGATCCCTATAGCATTTATAGAAGTAGGAGTTTGGGTGTTCATGACCTACTATGTGATTGGATTTGATCCAAATTTTGATCGGTTTTTCAGGCAATATGTACTGCTGTTACTTGTTAATCAGATGGCTTCTGCATTATTCCGTTTTCTTGCAGCAGCGTGTAGGAACTTAATTGTTGCTAACACCTTAGGGTCATTTGCATTGCTCATACTTTTCACACTGGGTGGCTTCGTGCTTTCGAGAGATGATATTAAAAAATGGTGGATTTGGGGTTACTGGATTTCACCTATGATGTATGCTCAGAATGCAATATCAGTTAACGAACTACTCGGGAAAAGTTGGAGACATGTGCTCCCAAACTCAACAGTAGCTCTGGGAGTTGCAGCTTTGAAGTCCCACGGAGTCTTTCCACACGAATATTGGTACTGGATAGGTGTTGGGGCAATGGCTGGATTTGCATTACTATTCAACATTTTTTACATTGTCGCTCTCACGTACCTAAACCCACTTGGGAAACCTCAGGCTGTTAAATCTGAAGATTCACAAAGCAATGAAAACGATGGAAGAACAGAAAGAACAAGTCAGTTACCACGCAGCCAAAATAGCTCAAGTCAACAAACCAAGACAGAGAGTAGGAATCAAGAAGCTATTCGTAACAACAGAAGAGGGATGGTTCTTCCATTTGAACCTTATTCCATCACTTTTGATGAAATTATATACTCAGTTGACATGCCACAGGAAATGAAGACCCAAGGTGTCGTAGAGGACAAATTAGTGCTTCTGAACGGGGTGAGTGGTGCTTTCAGGCCAGGTGTTTTAACAGCTTTGATGGGTGTGAGCGGTGCTGGAAAAACCACTCTCATGGATGTATTGGCGGGTAGGAAGACTGGCGGATATATTGAAGGAGACGTCAAAATTTCTGGCTACCCAAAGAAGCAAGAAACATTTGCTCGGATTTCTGGATATTGTGAACAAAATGACATCCACTCCCCTCATGTGACTGTCCATGAGTCTTTGCTCTACTCAGCATGGCTTCGTTTGCCATCAGAAGTTAAGGCTGAAACCAGAAAGTTGTTCATTGAGGAAGTGATGGAACTTATAGAACTGAAGCCATTGAGGCAAGTGCTAGTTGGGCTGCCTGGCGTGAATGGTCTCTCAACTGAGCAGCGCAAACGGCTAACCATTGCAGTTGAACTAGTAGCGAACCCCTCGATAATATTTATGGATGAGCCAACTTCAGGTTTAGATGCAAGAGCTGCTGCAATTGTCATGAGAACAGTTAGGAACACAGTGGACACTGGAAGAACAGTTGTTTGCACCATCCACCAGCCCAGCATTGACATATTTGAAGCTTTCGATGAGTTACTCCTACTGAAGCGAGGAGGACAAGAAATATATGTCGGGCCATTGGGTCGCCACTCTTGCCATCTAATCCAGTATTTTGAGGGAATTGAAGGAGTCAGTAAAATAAAAGACGGTTATAATCCAGCAACTTGGATGCTGGAAGCTACGACTTCAGCACAAGAATTATCTTTGGGGATTGATTTTGCCCAAGTTTACAAAAATTCAGAGCTATACAGGAGAAACAAGCAACTTATTAAAGAATTCAGCACACCAGCTCCTCCTTCAAAGGACCTCTATTTCCCCACTCGATACTCGCAACCATTTCTCGTACAGACCATTGCTTGCTTATGGAAACAACATTGGTCATATTGGCGCAACCCGTTATATAATGCAGTAAGATTGCTCTTCACAACTATCATAGCGTTGATGTTGGGGTCAATGTTCTGGAACCTCGGCTCCAAAACAAGAAGGCAACAAGATTTGTTCAATGCAATGGGTTCTATGTATACTGCCGTTCTCTTCCTCGGGATACAAAATGCTACCTCAGTGCAGCCTATAGTGGCTATTGAAAGAACAGTCTTCTATAGAGAAAAGGCAGCAGGGATGTATTCTGCTTTGCCATATGCATTTGCTCAGGTTTTGATTGAGCTCCCATATATTTTACTACAAGCGGTTGTTTATGGTGTCATAACTTATGTGATGATCGGATTTGACATGACTTTTGTTAAATTCTTTTGGTACCTATTCTTCATGTACTTCACATTGTTGTACTTCACATTTTACGGCATGATGACTGTGGCTGTGACACCAAACCATCATGTTGCTGCGATTGTTTCCTCTGCATTTTATGCACTGTGGAACCTCTTTTCAGGCTTCATCATCCCACGGCCGAGGATTCCCATATGGTGGAGATGGTATTACTGGGCGTGTCCGGTGGCTTGGACCTTGTATGGATTGATCGCATCACAGTTCGGAGATCTGAACGATATGCTCGATAATGGTCAAACTGTCGAACAATTTCTGAGAAGTTACTTTGGTTTCAGACATGACTTTGTGGGAGTTGTTGCAGTAGTGCATGTTGGGGTTACAGTGCTCTTTGGATTCATCTTTGCCTTCTCTATTAGGGCGTTTAATTTCCAAATGCGATAA

Protein Analysis

1438

Amino Acids

162.82

Weight (kDa)

8.38

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 93 - 143 9.3e-07 ABC-transporter N-terminal
ABC_tran PF00005 168 - 349 2.6e-15 ABC transporter
ABC2_membrane_7 PF19055 383 - 435 3.4e-06 ABC-2 type transporter
ABC2_membrane PF01061 504 - 716 4.3e-52 ABC-2 type transporter
PDR_assoc PF08370 721 - 783 4.3e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 868 - 1020 6.7e-20 ABC transporter
ABC2_membrane PF01061 1166 - 1379 4.9e-61 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 642, 1761, 3303
AasI GACNNNNNNGTC 1 cut(s) 493
AatII GACGTC 1 cut(s) 2733
Acc36I ACCTGC 1 cut(s) 1030
Acc65I GGTACC 1 cut(s) 3903
AccB1I GGYRCC 1 cut(s) 3903
AccB7I CCANNNNNTGG 3 cut(s) 227, 566, 4071
AccBSI CCGCTC 2 cut(s) 9, 2661
AccI GTMKAC 3 cut(s) 178, 1566, 3671
AccII CGCG 1 cut(s) 1227
AccIII TCCGGA 2 cut(s) 610, 626
AciI CCGC 8 cut(s) 9, 383, 516, 1225, 2661, 2696, 2712, 3836
AclWI GGATC 6 cut(s) 493, 602, 615, 827, 1819, 1883
AcoI YGGCCR 1 cut(s) 4052
AcsI RAATTY 9 cut(s) 662, 1090, 1379, 1555, 1894, 2736, 3385, 3425, 3893
AcuI CTGAAG 7 cut(s) 323, 1558, 2376, 2948, 3042, 3215, 3321
AcvI CACGTG 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 2730
AdeI CACNNNGTG 1 cut(s) 2045
AfiI CCNNNNNNNGG 8 cut(s) 227, 566, 948, 1195, 1303, 1792, 3059, 4071
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 3 cut(s) 773, 1231, 2167
AhdI GACNNNNNGTC 1 cut(s) 926
AhlI ACTAGT 1 cut(s) 3016
AjnI CCWGG 4 cut(s) 1215, 1323, 2629, 2959
AloI GAACNNNNNNTCC 2 cut(s) 3605, 3637
Alw21I GWGCWC 3 cut(s) 2175, 3816, 4260
Alw26I GTCTC 6 cut(s) 467, 1154, 1764, 2158, 2721, 2978
AlwI GGATC 6 cut(s) 493, 602, 615, 827, 1819, 1883
Ama87I CYCGRG 2 cut(s) 2150, 3689
Aor13HI TCCGGA 2 cut(s) 610, 626
AoxI GGCC 4 cut(s) 741, 2627, 3224, 4052
ApoI RAATTY 9 cut(s) 662, 1090, 1379, 1555, 1894, 2736, 3385, 3425, 3893
ArsI GACNNNNNNTTYG 2 cut(s) 3869, 3901
Asp700I GAANNNNTTC 2 cut(s) 2469, 4182
Asp718I GGTACC 1 cut(s) 3903
AspLEI GCGC 2 cut(s) 2991, 3540
AspS9I GGNCC 7 cut(s) 554, 613, 1019, 1220, 3224, 3454, 4107
AsuC2I CCSGG 2 cut(s) 192, 1466
AvaI CYCGRG 2 cut(s) 2150, 3689
AvaII GGWCC 6 cut(s) 554, 613, 1019, 1220, 3454, 4107
AxyI CCTNAGG 2 cut(s) 2008, 2340
BaeI ACNNNNGTAYC 2 cut(s) 930, 963
BamHI GGATCC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 3903
BanII GRGCYC 1 cut(s) 3816
BarI GAAGNNNNNNTAC 2 cut(s) 3896, 3928
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 6 cut(s) 87, 841, 1564, 2573, 2711, 3736
Bbv12I GWGCWC 3 cut(s) 2175, 3816, 4260
BceAI ACGGC 5 cut(s) 1143, 3011, 3662, 3964, 4067
BcgI CGANNNNNNTGC 2 cut(s) 1710, 1744
BciT130I CCWGG 4 cut(s) 1217, 1325, 2631, 2961
BciVI GTATCC 1 cut(s) 3687
BclI TGATCA 1 cut(s) 1605
BcnI CCSGG 2 cut(s) 192, 1466
BcoDI GTCTC 6 cut(s) 467, 1154, 1764, 2158, 2721, 2978
BcuI ACTAGT 1 cut(s) 3016
BfaI CTAG 4 cut(s) 204, 531, 2948, 3017
BfmI CTRYAG 5 cut(s) 1145, 1357, 1830, 3720, 3748
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 1030
BfuI GTATCC 1 cut(s) 3687
BglI GCCNNNNNGGC 2 cut(s) 45, 2938
BglII AGATCT 1 cut(s) 4141
Bme1390I CCNGG 6 cut(s) 192, 1217, 1325, 1466, 2631, 2961
Bme18I GGWCC 6 cut(s) 554, 613, 1019, 1220, 3454, 4107
BmeRI GACNNNNNGTC 1 cut(s) 926
BmeT110I CYCGRG 2 cut(s) 2150, 3689
BmgT120I GGNCC 7 cut(s) 554, 613, 1019, 1220, 3224, 3454, 4107
BmiI GGNNCC 9 cut(s) 263, 555, 609, 1221, 1222, 3614, 3622, 3905, 4025
BmrFI CCNGG 6 cut(s) 192, 1217, 1325, 1466, 2631, 2961
BmrI ACTGGG 2 cut(s) 2051, 4096
BmsI GCATC 7 cut(s) 746, 978, 999, 1626, 3058, 3309, 4136
BmuI ACTGGG 2 cut(s) 2051, 4096
BpiI GAAGAC 6 cut(s) 87, 841, 1564, 2573, 2711, 3736
BpmI CTGGAG 1 cut(s) 996
Bpu10I CCTNAGC 1 cut(s) 3798
BpuEI CTTGAG 5 cut(s) 161, 1259, 1513, 1805, 2413
BpuMI CCSGG 2 cut(s) 192, 1466
Bsa29I ATCGAT 1 cut(s) 321
BsaAI YACGTR 2 cut(s) 101, 2316
BsaHI GRCGYC 1 cut(s) 2730
BsaI GGTCTC 3 cut(s) 467, 1764, 2978
BsaJI CCNNGG 9 cut(s) 738, 760, 1216, 2218, 2572, 3616, 3688, 4049, 4055
BsaWI WCCGGW 3 cut(s) 610, 626, 4096
Bsc4I CCNNNNNNNGG 8 cut(s) 227, 566, 948, 1195, 1303, 1792, 3059, 4071
Bse21I CCTNAGG 2 cut(s) 2008, 2340
Bse3DI GCAATG 9 cut(s) 542, 1109, 1284, 2021, 2271, 2377, 3003, 3501, 3663
BseAI TCCGGA 2 cut(s) 610, 626
BseBI CCWGG 4 cut(s) 1217, 1325, 2631, 2961
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 9 cut(s) 738, 760, 1216, 2218, 2572, 3616, 3688, 4049, 4055
BseLI CCNNNNNNNGG 8 cut(s) 227, 566, 948, 1195, 1303, 1792, 3059, 4071
BseMI GCAATG 9 cut(s) 542, 1109, 1284, 2021, 2271, 2377, 3003, 3501, 3663
BseRI GAGGAG 4 cut(s) 1181, 1677, 3216, 3432
BseX3I CGGCCG 1 cut(s) 4052
BseYI CCCAGC 1 cut(s) 3152
BsgI GTGCAG 1 cut(s) 3734
Bsh1236I CGCG 1 cut(s) 1227
Bsh1285I CGRYCG 1 cut(s) 4055
BshFI GGCC 4 cut(s) 743, 2629, 3226, 4054
BshNI GGYRCC 1 cut(s) 3903
BshVI ATCGAT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 4055
BsiHKAI GWGCWC 3 cut(s) 2175, 3816, 4260
BsiHKCI CYCGRG 2 cut(s) 2150, 3689
BsiSI CCGG 6 cut(s) 27, 191, 611, 627, 1466, 4097
BslFI GGGAC 4 cut(s) 933, 1206, 1425, 2200
BslI CCNNNNNNNGG 8 cut(s) 227, 566, 948, 1195, 1303, 1792, 3059, 4071
BsmAI GTCTC 6 cut(s) 467, 1154, 1764, 2158, 2721, 2978
BsmBI CGTCTC 1 cut(s) 2721
BsmFI GGGAC 4 cut(s) 933, 1206, 1425, 2200
BsmI GAATGC 2 cut(s) 1107, 2131
BsnI GGCC 4 cut(s) 743, 2629, 3226, 4054
Bso31I GGTCTC 3 cut(s) 467, 1764, 2978
BsoBI CYCGRG 2 cut(s) 2150, 3689
Bsp1286I GDGCHC 3 cut(s) 2175, 3816, 4260
Bsp13I TCCGGA 2 cut(s) 610, 626
BspACI CCGC 8 cut(s) 9, 383, 516, 1225, 2661, 2696, 2712, 3836
BspANI GGCC 4 cut(s) 743, 2629, 3226, 4054
BspDI ATCGAT 1 cut(s) 321
BspEI TCCGGA 2 cut(s) 610, 626
BspFNI CGCG 1 cut(s) 1227
BspHI TCATGA 3 cut(s) 852, 1863, 3090
BspLI GGNNCC 9 cut(s) 263, 555, 609, 1221, 1222, 3614, 3622, 3905, 4025
BspMI ACCTGC 1 cut(s) 1030
BspPI GGATC 6 cut(s) 493, 602, 615, 827, 1819, 1883
BspQI GCTCTTC 2 cut(s) 1809, 3575
BspT107I GGYRCC 1 cut(s) 3903
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 3 cut(s) 467, 1764, 2978
BsrBI CCGCTC 2 cut(s) 9, 2661
BsrDI GCAATG 9 cut(s) 542, 1109, 1284, 2021, 2271, 2377, 3003, 3501, 3663
BssECI CCNNGG 9 cut(s) 738, 760, 1216, 2218, 2572, 3616, 3688, 4049, 4055
BssNAI GTATAC 2 cut(s) 179, 3672
BssNI GRCGYC 1 cut(s) 2730
BssT1I CCWWGG 3 cut(s) 738, 760, 2572
Bst1107I GTATAC 2 cut(s) 179, 3672
Bst2UI CCWGG 4 cut(s) 1217, 1325, 2631, 2961
Bst6I CTCTTC 5 cut(s) 799, 1809, 2479, 3575, 3689
BstACI GRCGYC 1 cut(s) 2730
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 2 cut(s) 3077, 4013
BstBAI YACGTR 2 cut(s) 101, 2316
BstC8I GCNNGC 3 cut(s) 1152, 1522, 3508
BstDSI CCRYGG 2 cut(s) 2218, 4049
BstENI CCTNNNNNAGG 1 cut(s) 1301
BstFNI CGCG 1 cut(s) 1227
BstHHI GCGC 2 cut(s) 2991, 3540
BstMAI GTCTC 6 cut(s) 467, 1154, 1764, 2158, 2721, 2978
BstMCI CGRYCG 1 cut(s) 4055
BstNI CCWGG 4 cut(s) 1217, 1325, 2631, 2961
BstNSI RCATGY 4 cut(s) 1235, 2171, 2554, 4244
BstSCI CCNGG 6 cut(s) 190, 1215, 1323, 1464, 2629, 2959
BstSFI CTRYAG 5 cut(s) 1145, 1357, 1830, 3720, 3748
BstUI CGCG 1 cut(s) 1227
BstV2I GAAGAC 6 cut(s) 87, 841, 1564, 2573, 2711, 3736
BstX2I RGATCY 3 cut(s) 607, 1824, 4141
BstXI CCANNNNNNTGG 2 cut(s) 2683, 3315
BstYI RGATCY 3 cut(s) 607, 1824, 4141
BstZ17I GTATAC 2 cut(s) 179, 3672
BstZI CGGCCG 1 cut(s) 4052
Bsu15I ATCGAT 1 cut(s) 321
Bsu36I CCTNAGG 2 cut(s) 2008, 2340
BsuI GTATCC 1 cut(s) 3687
BsuRI GGCC 4 cut(s) 743, 2629, 3226, 4054
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 2 cut(s) 2218, 4049
BtsIMutI CAGTG 7 cut(s) 1698, 2039, 3117, 3117, 3717, 4016, 4260
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 3 cut(s) 1152, 1522, 3508
CciI TCATGA 3 cut(s) 852, 1863, 3090
CfoI GCGC 2 cut(s) 2991, 3540
Cfr13I GGNCC 7 cut(s) 554, 613, 1019, 1220, 3224, 3454, 4107
ClaI ATCGAT 1 cut(s) 321
DraIII CACNNNGTG 1 cut(s) 2045
DrdI GACNNNNNNGTC 1 cut(s) 493
DriI GACNNNNNGTC 1 cut(s) 926
DseDI GACNNNNNNGTC 1 cut(s) 493
EaeI YGGCCR 1 cut(s) 4052
EagI CGGCCG 1 cut(s) 4052
Eam1104I CTCTTC 5 cut(s) 799, 1809, 2479, 3575, 3689
Eam1105I GACNNNNNGTC 1 cut(s) 926
EarI CTCTTC 5 cut(s) 799, 1809, 2479, 3575, 3689
EciI GGCGGA 1 cut(s) 2727
Ecl136II GAGCTC 1 cut(s) 3814
EclXI CGGCCG 1 cut(s) 4052
Eco130I CCWWGG 3 cut(s) 738, 760, 2572
Eco24I GRGCYC 1 cut(s) 3816
Eco31I GGTCTC 3 cut(s) 467, 1764, 2978
Eco32I GATATC 1 cut(s) 1050
Eco47I GGWCC 6 cut(s) 554, 613, 1019, 1220, 3454, 4107
Eco52I CGGCCG 1 cut(s) 4052
Eco53kI GAGCTC 1 cut(s) 3814
Eco57I CTGAAG 7 cut(s) 323, 1558, 2376, 2948, 3042, 3215, 3321
Eco72I CACGTG 1 cut(s) 101
Eco81I CCTNAGG 2 cut(s) 2008, 2340
Eco88I CYCGRG 2 cut(s) 2150, 3689
EcoICRI GAGCTC 1 cut(s) 3814
EcoNI CCTNNNNNAGG 1 cut(s) 1301
EcoO109I RGGNCCY 3 cut(s) 554, 1220, 3454
EcoRI GAATTC 3 cut(s) 1090, 1555, 3425
EcoRII CCWGG 4 cut(s) 1215, 1323, 2629, 2959
EcoRV GATATC 1 cut(s) 1050
EcoT14I CCWWGG 3 cut(s) 738, 760, 2572
EcoT22I ATGCAT 2 cut(s) 1109, 3793
EcoT38I GRGCYC 1 cut(s) 3816
ErhI CCWWGG 3 cut(s) 738, 760, 2572
Esp3I CGTCTC 1 cut(s) 2721
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 4 cut(s) 933, 1206, 1425, 2200
FauI CCCGC 2 cut(s) 1232, 2689
FauNDI CATATG 2 cut(s) 3787, 4067
FbaI TGATCA 1 cut(s) 1605
FblI GTMKAC 3 cut(s) 178, 1566, 3671
FriOI GRGCYC 1 cut(s) 3816
FspBI CTAG 4 cut(s) 204, 531, 2948, 3017
GlaI GCGC 2 cut(s) 2990, 3539
GsaI CCCAGC 1 cut(s) 3156
GsuI CTGGAG 1 cut(s) 996
HaeIII GGCC 4 cut(s) 743, 2629, 3226, 4054
HapII CCGG 6 cut(s) 27, 191, 611, 627, 1466, 4097
HhaI GCGC 2 cut(s) 2991, 3540
Hin1I GRCGYC 1 cut(s) 2730
Hin6I GCGC 2 cut(s) 2989, 3538
HinP1I GCGC 2 cut(s) 2989, 3538
HincII GTYRAC 5 cut(s) 436, 698, 2140, 2435, 2548
HindII GTYRAC 5 cut(s) 436, 698, 2140, 2435, 2548
HindIII AAGCTT 6 cut(s) 146, 305, 620, 1518, 1745, 3171
HpaI GTTAAC 2 cut(s) 436, 2140
HpaII CCGG 6 cut(s) 27, 191, 611, 627, 1466, 4097
Hpy99I CGWCG 2 cut(s) 893, 1757
HpyAV CCTTC 9 cut(s) 624, 716, 850, 866, 2717, 3269, 3456, 3627, 4288
HpyCH4IV ACGT 6 cut(s) 100, 775, 888, 1569, 2315, 2730
HpySE526I ACGT 6 cut(s) 100, 775, 888, 1569, 2315, 2730
Hsp92I GRCGYC 1 cut(s) 2730
HspAI GCGC 2 cut(s) 2989, 3538
KflI GGGWCCC 1 cut(s) 1220
Kpn2I TCCGGA 2 cut(s) 610, 626
KpnI GGTACC 1 cut(s) 3907
Ksp22I TGATCA 1 cut(s) 1605
KspAI GTTAAC 2 cut(s) 436, 2140
LguI GCTCTTC 2 cut(s) 1809, 3575
LmnI GCTCC 5 cut(s) 1327, 2178, 3445, 3626, 3819
LweI GCATC 7 cut(s) 746, 978, 999, 1626, 3058, 3309, 4136
MaeI CTAG 4 cut(s) 204, 531, 2948, 3017
MaeII ACGT 6 cut(s) 100, 775, 888, 1569, 2315, 2730
MbiI CCGCTC 2 cut(s) 9, 2661
MfeI CAATTG 3 cut(s) 348, 1586, 3084
MflI RGATCY 3 cut(s) 607, 1824, 4141
MhlI GDGCHC 3 cut(s) 2175, 3816, 4260
MlyI GAGTC 5 cut(s) 481, 1576, 2232, 2840, 3288
MmeI TCCRAC 6 cut(s) 310, 368, 748, 997, 1832, 2141
Mph1103I ATGCAT 2 cut(s) 1109, 3793
MroI TCCGGA 2 cut(s) 610, 626
MroXI GAANNNNTTC 2 cut(s) 2469, 4182
MslI CAYNNNNRTG 2 cut(s) 1703, 2681
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 6 cut(s) 27, 191, 611, 627, 1466, 4097
MspR9I CCNGG 6 cut(s) 192, 1217, 1325, 1466, 2631, 2961
MunI CAATTG 3 cut(s) 348, 1586, 3084
Mva1269I GAATGC 2 cut(s) 1107, 2131
MvaI CCWGG 4 cut(s) 1217, 1325, 2631, 2961
MvnI CGCG 1 cut(s) 1227
NciI CCSGG 2 cut(s) 192, 1466
NdeI CATATG 2 cut(s) 3787, 4067
NlaIV GGNNCC 9 cut(s) 263, 555, 609, 1221, 1222, 3614, 3622, 3905, 4025
NmeAIII GCCGAG 2 cut(s) 3597, 4080
NmuCI GTSAC 5 cut(s) 892, 994, 1306, 2818, 3967
NsiI ATGCAT 2 cut(s) 1109, 3793
NspI RCATGY 4 cut(s) 1235, 2171, 2554, 4244
PagI TCATGA 3 cut(s) 852, 1863, 3090
PciI ACATGT 2 cut(s) 1231, 2167
PciSI GCTCTTC 2 cut(s) 1809, 3575
PcsI WCGNNNNNNNCGW 1 cut(s) 4155
PctI GAATGC 2 cut(s) 1107, 2131
PdmI GAANNNNTTC 2 cut(s) 2469, 4182
PflMI CCANNNNNTGG 3 cut(s) 227, 566, 4071
PleI GAGTC 5 cut(s) 481, 1576, 2231, 2839, 3287
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 5 cut(s) 481, 1576, 2231, 2839, 3287
Ppu21I YACGTR 2 cut(s) 101, 2316
PpuMI RGGWCCY 3 cut(s) 554, 1220, 3454
PscI ACATGT 2 cut(s) 1231, 2167
PsiI TTATAA 3 cut(s) 642, 1761, 3303
Psp124BI GAGCTC 1 cut(s) 3816
Psp5II RGGWCCY 3 cut(s) 554, 1220, 3454
Psp6I CCWGG 4 cut(s) 1215, 1323, 2629, 2959
PspCI CACGTG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 3152
PspGI CCWGG 4 cut(s) 1215, 1323, 2629, 2959
PspN4I GGNNCC 9 cut(s) 263, 555, 609, 1221, 1222, 3614, 3622, 3905, 4025
PspPI GGNCC 7 cut(s) 554, 613, 1019, 1220, 3224, 3454, 4107
PspPPI RGGWCCY 3 cut(s) 554, 1220, 3454
PsuI RGATCY 3 cut(s) 607, 1824, 4141
RseI CAYNNNNRTG 2 cut(s) 1703, 2681
SacI GAGCTC 1 cut(s) 3816
SapI GCTCTTC 2 cut(s) 1809, 3575
Sau96I GGNCC 7 cut(s) 554, 613, 1019, 1220, 3224, 3454, 4107
SchI GAGTC 5 cut(s) 481, 1576, 2232, 2840, 3288
ScrFI CCNGG 6 cut(s) 192, 1217, 1325, 1466, 2631, 2961
SduI GDGCHC 3 cut(s) 2175, 3816, 4260
SfaNI GCATC 7 cut(s) 746, 978, 999, 1626, 3058, 3309, 4136
SfcI CTRYAG 5 cut(s) 1145, 1357, 1830, 3720, 3748
SinI GGWCC 6 cut(s) 554, 613, 1019, 1220, 3454, 4107
SmiMI CAYNNNNRTG 2 cut(s) 1703, 2681
SmlI CTYRAG 6 cut(s) 140, 308, 1238, 1528, 1820, 2428
SmoI CTYRAG 6 cut(s) 140, 308, 1238, 1528, 1820, 2428
SpeI ACTAGT 1 cut(s) 3016
SsiI CCGC 8 cut(s) 9, 383, 516, 1225, 2661, 2696, 2712, 3836
SspI AATATT 3 cut(s) 1538, 2240, 3039
SspMI CTAG 4 cut(s) 204, 531, 2948, 3017
SstI GAGCTC 1 cut(s) 3816
StyD4I CCNGG 6 cut(s) 190, 1215, 1323, 1464, 2629, 2959
StyI CCWWGG 3 cut(s) 738, 760, 2572
TaiI ACGT 6 cut(s) 103, 778, 891, 1572, 2318, 2733
TaqII GACCGA 1 cut(s) 683
TatI WGTACW 3 cut(s) 1921, 3918, 3933
TscAI CASTG 7 cut(s) 1698, 2046, 3117, 3124, 3717, 4023, 4260
TseFI GTSAC 5 cut(s) 892, 994, 1306, 2818, 3967
Tsp45I GTSAC 5 cut(s) 892, 994, 1306, 2818, 3967
TspGWI ACGGA 4 cut(s) 455, 1357, 1952, 2235
TspRI CASTG 7 cut(s) 1698, 2046, 3117, 3124, 3717, 4023, 4260
Van91I CCANNNNNTGG 3 cut(s) 227, 566, 4071
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 6 cut(s) 554, 613, 1019, 1220, 3454, 4107
XagI CCTNNNNNAGG 1 cut(s) 1301
XapI RAATTY 9 cut(s) 662, 1090, 1379, 1555, 1894, 2736, 3385, 3425, 3893
XceI RCATGY 4 cut(s) 1235, 2171, 2554, 4244
XcmI CCANNNNNNNNNTGG 2 cut(s) 583, 2238
XmiI GTMKAC 3 cut(s) 178, 1566, 3671
XmnI GAANNNNTTC 2 cut(s) 2469, 4182
XspI CTAG 4 cut(s) 204, 531, 2948, 3017
ZraI GACGTC 1 cut(s) 2731
Zsp2I ATGCAT 2 cut(s) 1109, 3793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.