RchiOBHm_Chr1g0366191
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000843
Physical Location & Seq
Reverse (-)
56839543 .. 56840817
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59076

Sequence Viewer

Length: 1275 bp
ATGAGGTACACCCACCACTCCCTCTCAAATGGTGATTTTGATCGAAATGTGAACCAGAAACAGCCACAATTCTCTTTGAATGGTGATTGTGGTGCTGTCAAATTAACTGGTTTTGATAAGAAATTAGATGTTGAGGAGGGAGTGAATTCTGATAAGATGGTTAAGGTGAATAGTAGGGTTGGTATAGAGTTCCATGAGCTTGAGAGCATTAGTGCTAAGCAGGACAAGGGAGGTTTAATTGAAGATAAGCAGCAGCTCATCAATGGAATGTTAGAATTTCATGCCCTCCAACTGTTCGATAAAATGCCGAACTCAGAAGGGTTGTGTGATGCAAGAAGCACCGGGTTGTGTAATGCAAGAAGGACCATTATTGCTCCTATAAGCATTCGAGACAAAGGGGGAGGACTCACTACTCATCGTGAAGTTGTTGATGCTTCTGATGAGATGGTGATATGTTCTGTCAATGCTAAGCAGGACGATGATGGTTTCGCTGAAGATAAGAAGCAGGTTTCAGGAAGTGTGACTTACAATGGTCATGACATGCATGAATTTGTACCTCAGAGAAGTGCTGCATATAGCAGTCAACATGATGTTCATATTGGGGAAATGACAGTTGCAGAAACCTTGGCTTTGTCGGTAAGATGCCAAGGCGCCGGAACTCGTTATGAGATGCTAGAAGAGTTGAGTAGAAGAGAGAAAGAAGCAAGAATTAAGCTGGATATAGACTTGGATATCTACATGAAGGGAATAGCATCAGAAAGCCAAAGGGCAGTATTTATAACAAGTTATATTCTTAAGATTTTAGGACAGGATGGCTATGCAGATACCTTGGTAGGGGATCAAATGATAAGGGGTATATCTGGAGGACAAAAGAAGTGTGTCACAACTGGTGAGATGTCGGTTGGACCTGCTAAGGCATTATTTATGGACGAAATATCGACTGGTTTGGATAGTTCAACAACTTATCAGATAGTAAATTCAATCAAGCAATTTGTTCACATTCTCCACGGGACTGCTTTCATCTCATTGCTGCAGCCACCACCTGAGACTTATGATCTATTTGATGACATTATTCTTCTTTCTGATGGTCAAATCGTGTACCAAGGTCCCCGTGAATATGTTCTTGACTTTTTCAAATCCATGGGCTTCAAATGTCCCGAGAGAAAATGTGTGGCCGATTTTCTGCAAGAAGTGACATCAAAGAAAGATAAGGAGCAGTATCGGGGAAGCAGAGATGATCCTTACAAGTTCATCACAATTGAAGAATTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

424

Amino Acids

47.31

Weight (kDa)

5.21

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 345 - 396 8.4e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
Acc36I ACCTGC 2 cut(s) 496, 916
AccB1I GGYRCC 1 cut(s) 650
AclWI GGATC 2 cut(s) 846, 1232
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 5 cut(s) 145, 275, 548, 976, 1265
AcuI CTGAAG 1 cut(s) 513
AcyI GRCGYC 1 cut(s) 651
AfaI GTAC 3 cut(s) 8, 555, 1100
AfiI CCNNNNNNNGG 1 cut(s) 834
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 7 cut(s) 79, 242, 957, 981, 1135, 1150, 1262
AluBI AGCT 3 cut(s) 199, 256, 715
AluI AGCT 3 cut(s) 199, 256, 715
Alw26I GTCTC 2 cut(s) 384, 1040
AlwI GGATC 2 cut(s) 846, 1232
Ama87I CYCGRG 1 cut(s) 1157
AoxI GGCC 1 cut(s) 1173
ApeKI GCWGC 5 cut(s) 250, 253, 569, 1030, 1033
ApoI RAATTY 5 cut(s) 145, 275, 548, 976, 1265
Asp700I GAANNNNTTC 1 cut(s) 1119
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 3 cut(s) 363, 905, 1106
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 5 cut(s) 44, 95, 178, 460, 902
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 3 cut(s) 363, 905, 1106
BaeI ACNNNNGTAYC 2 cut(s) 816, 849
BanI GGYRCC 1 cut(s) 650
BbvI GCAGC 5 cut(s) 262, 265, 556, 1017, 1045
BccI CCATC 5 cut(s) 151, 439, 476, 806, 1079
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 384, 1040
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 1031
BfoI RGCGCY 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 794
BfuAI ACCTGC 2 cut(s) 496, 916
BisI GCNGC 5 cut(s) 251, 254, 570, 1031, 1034
BlpI GCTNAGC 2 cut(s) 216, 468
BlsI GCNGC 5 cut(s) 252, 255, 571, 1032, 1035
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 3 cut(s) 363, 905, 1106
BmeT110I CYCGRG 1 cut(s) 1157
BmgT120I GGNCC 3 cut(s) 363, 905, 1106
BmiI GGNNCC 2 cut(s) 652, 1108
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 5 cut(s) 319, 421, 632, 660, 761
BpmI CTGGAG 1 cut(s) 882
Bpu10I CCTNAGC 1 cut(s) 912
Bpu1102I GCTNAGC 2 cut(s) 216, 468
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 651
BsaJI CCNNGG 6 cut(s) 624, 646, 828, 1006, 1102, 1140
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse1I ACTGG 3 cut(s) 112, 892, 946
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 6 cut(s) 624, 646, 828, 1006, 1102, 1140
BseGI GGATG 1 cut(s) 817
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 3 cut(s) 327, 572, 1035
BseNI ACTGG 3 cut(s) 112, 892, 946
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 5 cut(s) 262, 265, 556, 1017, 1045
BshFI GGCC 1 cut(s) 1175
BshNI GGYRCC 1 cut(s) 650
BsiHKCI CYCGRG 1 cut(s) 1157
BsiSI CCGG 2 cut(s) 342, 654
BslFI GGGAC 3 cut(s) 1024, 1092, 1140
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 2 cut(s) 384, 1040
BsmFI GGGAC 3 cut(s) 1024, 1092, 1140
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 1 cut(s) 1175
BsoBI CYCGRG 1 cut(s) 1157
Bsp143I GATC 4 cut(s) 40, 838, 1054, 1237
Bsp1720I GCTNAGC 2 cut(s) 216, 468
Bsp19I CCATGG 1 cut(s) 1140
BspANI GGCC 1 cut(s) 1175
BspCNI CTCAG 3 cut(s) 326, 571, 1036
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 652, 1108
BspMAI CTGCAG 1 cut(s) 1035
BspMI ACCTGC 2 cut(s) 496, 916
BspPI GGATC 2 cut(s) 846, 1232
BspT107I GGYRCC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 1025
BsrI ACTGG 3 cut(s) 112, 892, 946
BssECI CCNNGG 6 cut(s) 624, 646, 828, 1006, 1102, 1140
BssMI GATC 4 cut(s) 40, 838, 1054, 1237
BssNI GRCGYC 1 cut(s) 651
BssT1I CCWWGG 5 cut(s) 624, 646, 828, 1102, 1140
Bst4CI ACNGT 2 cut(s) 294, 613
Bst6I CTCTTC 2 cut(s) 672, 685
BstACI GRCGYC 1 cut(s) 651
BstAFI CTTAAG 1 cut(s) 794
BstDEI CTNAG 7 cut(s) 216, 313, 468, 558, 912, 1044, 1272
BstDSI CCRYGG 2 cut(s) 1006, 1140
BstF5I GGATG 1 cut(s) 817
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 4 cut(s) 43, 841, 1057, 1240
BstMAI GTCTC 2 cut(s) 384, 1040
BstMBI GATC 4 cut(s) 40, 838, 1054, 1237
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 1031
BstV1I GCAGC 5 cut(s) 262, 265, 556, 1017, 1045
BsuRI GGCC 1 cut(s) 1175
BtgI CCRYGG 2 cut(s) 1006, 1140
BtsCI GGATG 1 cut(s) 817
BveI ACCTGC 2 cut(s) 496, 916
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 3 cut(s) 363, 905, 1106
Csp6I GTAC 3 cut(s) 7, 554, 1099
CviAII CATG 8 cut(s) 194, 281, 536, 541, 545, 587, 739, 1141
CviQI GTAC 3 cut(s) 7, 554, 1099
DdeI CTNAG 7 cut(s) 216, 313, 468, 558, 912, 1044, 1272
DinI GGCGCC 1 cut(s) 652
DpnI GATC 4 cut(s) 42, 840, 1056, 1239
DpnII GATC 4 cut(s) 40, 838, 1054, 1237
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 2 cut(s) 672, 685
EarI CTCTTC 2 cut(s) 672, 685
Eco130I CCWWGG 5 cut(s) 624, 646, 828, 1102, 1140
Eco32I GATATC 1 cut(s) 733
Eco47I GGWCC 3 cut(s) 363, 905, 1106
Eco57I CTGAAG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 1157
EcoO109I RGGNCCY 1 cut(s) 1106
EcoRI GAATTC 2 cut(s) 145, 1265
EcoRV GATATC 1 cut(s) 733
EcoT14I CCWWGG 5 cut(s) 624, 646, 828, 1102, 1140
EcoT22I ATGCAT 1 cut(s) 546
EgeI GGCGCC 1 cut(s) 652
EheI GGCGCC 1 cut(s) 652
ErhI CCWWGG 5 cut(s) 624, 646, 828, 1102, 1140
FaeI CATG 8 cut(s) 197, 284, 539, 544, 548, 590, 742, 1144
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FaqI GGGAC 3 cut(s) 1024, 1092, 1140
FatI CATG 8 cut(s) 193, 280, 535, 540, 544, 586, 738, 1140
Fnu4HI GCNGC 5 cut(s) 251, 254, 570, 1031, 1034
FokI GGATG 1 cut(s) 824
Fsp4HI GCNGC 5 cut(s) 251, 254, 570, 1031, 1034
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 652
GluI GCNGC 5 cut(s) 251, 254, 570, 1031, 1034
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 1 cut(s) 1175
HapII CCGG 2 cut(s) 342, 654
HhaI GCGC 1 cut(s) 653
Hin1I GRCGYC 1 cut(s) 651
Hin1II CATG 8 cut(s) 197, 284, 539, 544, 548, 590, 742, 1144
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 1 cut(s) 584
HindII GTYRAC 1 cut(s) 584
HinfI GANTC 1 cut(s) 405
HpaII CCGG 2 cut(s) 342, 654
HphI GGTGA 5 cut(s) 44, 95, 178, 460, 902
Hpy166II GTNNAC 5 cut(s) 9, 52, 584, 997, 1099
Hpy188I TCNGA 7 cut(s) 151, 316, 439, 561, 757, 969, 1084
Hpy188III TCNNGA 7 cut(s) 389, 419, 513, 536, 861, 1124, 1157
Hpy8I GTNNAC 5 cut(s) 9, 52, 584, 997, 1099
HpyAV CCTTC 3 cut(s) 311, 354, 736
HpyCH4III ACNGT 2 cut(s) 294, 613
HpyCH4V TGCA 8 cut(s) 332, 356, 544, 572, 617, 821, 1033, 1186
HpyF3I CTNAG 7 cut(s) 216, 313, 468, 558, 912, 1044, 1272
Hsp92I GRCGYC 1 cut(s) 651
Hsp92II CATG 8 cut(s) 197, 284, 539, 544, 548, 590, 742, 1144
HspAI GCGC 1 cut(s) 651
KasI GGCGCC 1 cut(s) 650
Kzo9I GATC 4 cut(s) 40, 838, 1054, 1237
LmnI GCTCC 2 cut(s) 379, 1213
Lsp1109I GCAGC 5 cut(s) 262, 265, 556, 1017, 1045
LweI GCATC 5 cut(s) 319, 421, 632, 660, 761
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 3 cut(s) 520, 880, 1192
MalI GATC 4 cut(s) 42, 840, 1056, 1239
MboI GATC 4 cut(s) 40, 838, 1054, 1237
MboII GAAGA 6 cut(s) 254, 506, 689, 702, 1067, 1274
MfeI CAATTG 1 cut(s) 1257
Mly113I GGCGCC 1 cut(s) 651
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 2 cut(s) 313, 883
MnlI CCTC 8 cut(s) 32, 127, 130, 224, 296, 395, 567, 857
Mph1103I ATGCAT 1 cut(s) 546
MroXI GAANNNNTTC 1 cut(s) 1119
MseI TTAA 5 cut(s) 104, 162, 236, 711, 795
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 2 cut(s) 342, 654
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 1 cut(s) 1257
Mva1269I GAATGC 1 cut(s) 384
NarI GGCGCC 1 cut(s) 651
NciI CCSGG 1 cut(s) 343
NcoI CCATGG 1 cut(s) 1140
NdeII GATC 4 cut(s) 40, 838, 1054, 1237
NlaIII CATG 8 cut(s) 197, 284, 539, 544, 548, 590, 742, 1144
NlaIV GGNNCC 2 cut(s) 652, 1108
NmuCI GTSAC 3 cut(s) 520, 880, 1192
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 1 cut(s) 544
PagI TCATGA 1 cut(s) 535
PctI GAATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 1119
PkrI GCNGC 5 cut(s) 252, 255, 571, 1032, 1035
PleI GAGTC 1 cut(s) 399
PluTI GGCGCC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 1106
PsiI TTATAA 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 1106
PspN4I GGNNCC 2 cut(s) 652, 1108
PspPI GGNCC 3 cut(s) 363, 905, 1106
PspPPI RGGWCCY 1 cut(s) 1106
PstI CTGCAG 1 cut(s) 1035
RsaI GTAC 3 cut(s) 8, 555, 1100
RsaNI GTAC 3 cut(s) 7, 554, 1099
SaqAI TTAA 5 cut(s) 104, 162, 236, 711, 795
SatI GCNGC 5 cut(s) 251, 254, 570, 1031, 1034
Sau3AI GATC 4 cut(s) 40, 838, 1054, 1237
Sau96I GGNCC 3 cut(s) 363, 905, 1106
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 343
SfaNI GCATC 5 cut(s) 319, 421, 632, 660, 761
SfcI CTRYAG 1 cut(s) 1031
SfoI GGCGCC 1 cut(s) 652
SinI GGWCC 3 cut(s) 363, 905, 1106
SmlI CTYRAG 2 cut(s) 200, 794
SmoI CTYRAG 2 cut(s) 200, 794
SspDI GGCGCC 1 cut(s) 650
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 5 cut(s) 624, 646, 828, 1102, 1140
TaaI ACNGT 2 cut(s) 294, 613
TaqI TCGA 4 cut(s) 43, 297, 388, 938
Tru1I TTAA 5 cut(s) 104, 162, 236, 711, 795
Tru9I TTAA 5 cut(s) 104, 162, 236, 711, 795
TseFI GTSAC 3 cut(s) 520, 880, 1192
TseI GCWGC 5 cut(s) 250, 253, 569, 1030, 1033
Tsp45I GTSAC 3 cut(s) 520, 880, 1192
TspDTI ATGAA 6 cut(s) 269, 561, 584, 755, 1009, 1240
Vha464I CTTAAG 1 cut(s) 794
VpaK11BI GGWCC 3 cut(s) 363, 905, 1106
XapI RAATTY 5 cut(s) 145, 275, 548, 976, 1265
XceI RCATGY 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 1119
XspI CTAG 1 cut(s) 674
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.