RLG00000034331
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000843
Physical Location & Seq
Reverse (-)
40845269 .. 40849029
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034331

Sequence Viewer

Length: 1095 bp
ATGGGGATTGAACGAGTGCTTAAAGAAAAGTTTGCAGATGCACTCAAGGATATTCAACAAGTCTTTGATGGAGAAAACAGAGAGACCACAGTTGAGATGTTATTGGCTCTAGAGCTAAGTAGAAGAGAGAAAGATGCAAGTATTAAGCCAGATCCAGACTTGGATATCTACATGAAGGGAATAGCATCAGAAAGTAAGAGAGCAGCATTTGTGACAAATTATATTCTGAAGGTTTTGGGATTGGAGGTCTGTGCAAATACCTTGGTAGGGGATCAATTGATAAGGGGAATCTCTGGAGGACAAAAGAAGCGAGTCACAACTGGTAAATTAAGTCTTGGTCCTGCTAAGGCACTATTCATGGATGAAATATCGACTGGTTTGGATAGTTCAACAACTTATCAAATAGTGAATTCCATCAAGCAATATGTTCACATTCTCCAAGGGACTGCATTCATCTCACTACTGCAGCCAGCACGCGAGACTTATGATCTATTTGATGACATTATTCTCCTTTCTGATGGTCAAATTGTGTATCAAGGTCCCCGTGAACATGTTCTCGATTTTTTTGAGTCTATGGGCTTCAGATGTCCAGAGAGAAAAGGTGTGGCCGATTTCCTGCAAGAAGTGACATCAAGGAAAGATCAGGAGCAGTATTGGTTTAGCAGAGATGAACCTTCCAGGTTCATCACAGTCGAAAAATTTTCCGTGGCATTCCAATCTTTCCATGAAGGGCGCACAATTACACATGAACTTGCTACTCCATTTGACAAGACCAAGAGCCACTCAGCTGCATTAACGACAAAAAAATATGGTGTTAAAAGAGCAGAACTGCTGAAAGCTTGTTTCTCAAGGGAGTTCTTGCTCATGAAGAGGAATTCATTTGTTTACCTTTTCAAGCTTATCCAAGGAGAGCTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGATGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

365

Amino Acids

41.54

Weight (kDa)

8.66

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 156 - 239 3.9e-07 ABC-2 type transporter
ABC2_membrane PF01061 306 - 363 3.3e-10 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccII CGCG 1 cut(s) 477
AclWI GGATC 4 cut(s) 146, 279, 1006, 1070
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 3 cut(s) 409, 698, 874
AcuI CTGAAG 2 cut(s) 248, 565
AfiI CCNNNNNNNGG 2 cut(s) 267, 1085
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 5 cut(s) 11, 56, 390, 895, 1031
AjnI CCWGG 1 cut(s) 677
AluBI AGCT 6 cut(s) 115, 788, 839, 898, 913, 934
AluI AGCT 6 cut(s) 115, 788, 839, 898, 913, 934
Alw26I GTCTC 2 cut(s) 77, 473
AlwI GGATC 4 cut(s) 146, 279, 1006, 1070
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 3 cut(s) 203, 466, 788
ApoI RAATTY 3 cut(s) 409, 698, 874
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 2 cut(s) 338, 539
AsuHPI GGTGA 2 cut(s) 1012, 1045
AvaII GGWCC 2 cut(s) 338, 539
BbvI GCAGC 3 cut(s) 215, 478, 775
BccI CCATC 3 cut(s) 62, 422, 512
BciT130I CCWGG 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 77, 473
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 2 cut(s) 464, 924
BisI GCNGC 3 cut(s) 204, 467, 789
BlsI GCNGC 3 cut(s) 205, 468, 790
Bme1390I CCNGG 1 cut(s) 679
Bme18I GGWCC 2 cut(s) 338, 539
BmgT120I GGNCC 2 cut(s) 338, 539
BmiI GGNNCC 2 cut(s) 541, 1004
BmrFI CCNGG 1 cut(s) 679
BmsI GCATC 4 cut(s) 28, 124, 194, 951
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 3 cut(s) 29, 832, 992
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 261, 439, 705, 904, 977
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 1085
Bse1I ACTGG 3 cut(s) 325, 379, 938
BseBI CCWGG 1 cut(s) 679
BseDI CCNNGG 5 cut(s) 261, 439, 705, 904, 977
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 267, 1085
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 3 cut(s) 325, 379, 938
BseRI GAGGAG 1 cut(s) 995
BseXI GCAGC 3 cut(s) 215, 478, 775
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 1 cut(s) 608
BsiSI CCGG 1 cut(s) 995
BslFI GGGAC 2 cut(s) 457, 525
BslI CCNNNNNNNGG 2 cut(s) 267, 1085
BsmAI GTCTC 2 cut(s) 77, 473
BsmFI GGGAC 2 cut(s) 457, 525
BsmI GAATGC 2 cut(s) 449, 710
BsnI GGCC 1 cut(s) 608
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
Bsp19I CCATGG 1 cut(s) 977
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 797
BspFNI CGCG 1 cut(s) 477
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 2 cut(s) 541, 1004
BspMAI CTGCAG 1 cut(s) 468
BspPI GGATC 4 cut(s) 146, 279, 1006, 1070
BspQI GCTCTTC 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 3 cut(s) 325, 379, 938
BssECI CCNNGG 5 cut(s) 261, 439, 705, 904, 977
BssMI GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
BssT1I CCWWGG 4 cut(s) 261, 439, 904, 977
Bst2UI CCWGG 1 cut(s) 679
Bst4CI ACNGT 2 cut(s) 91, 691
Bst6I CTCTTC 3 cut(s) 118, 863, 971
BstC8I GCNNGC 2 cut(s) 471, 475
BstDEI CTNAG 3 cut(s) 116, 345, 784
BstDSI CCRYGG 2 cut(s) 705, 977
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 6 cut(s) 154, 274, 490, 643, 1014, 1078
BstMAI GTCTC 2 cut(s) 77, 473
BstMBI GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
BstMWI GCNNNNNNNGC 1 cut(s) 995
BstNI CCWGG 1 cut(s) 679
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 677
BstSFI CTRYAG 2 cut(s) 464, 924
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 215, 478, 775
BstX2I RGATCY 2 cut(s) 151, 1011
BstYI RGATCY 2 cut(s) 151, 1011
BsuRI GGCC 1 cut(s) 608
BtgI CCRYGG 2 cut(s) 705, 977
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 2 cut(s) 471, 475
CciI TCATGA 1 cut(s) 864
CfoI GCGC 1 cut(s) 735
Cfr13I GGNCC 2 cut(s) 338, 539
CviAII CATG 8 cut(s) 172, 358, 551, 725, 746, 865, 978, 999
DdeI CTNAG 3 cut(s) 116, 345, 784
DpnI GATC 6 cut(s) 153, 273, 489, 642, 1013, 1077
DpnII GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 3 cut(s) 118, 863, 971
EarI CTCTTC 3 cut(s) 118, 863, 971
Eco130I CCWWGG 4 cut(s) 261, 439, 904, 977
Eco31I GGTCTC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 338, 539
Eco57I CTGAAG 2 cut(s) 248, 565
EcoO109I RGGNCCY 1 cut(s) 539
EcoRI GAATTC 2 cut(s) 409, 874
EcoRII CCWGG 1 cut(s) 677
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 4 cut(s) 261, 439, 904, 977
ErhI CCWWGG 4 cut(s) 261, 439, 904, 977
FaeI CATG 8 cut(s) 175, 361, 554, 728, 749, 868, 981, 1002
FalI AAGNNNNNCTT 4 cut(s) 897, 929, 950, 982
FaqI GGGAC 2 cut(s) 457, 525
FatI CATG 8 cut(s) 171, 357, 550, 724, 745, 864, 977, 998
FauNDI CATATG 1 cut(s) 985
Fnu4HI GCNGC 3 cut(s) 204, 467, 789
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 3 cut(s) 204, 467, 789
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 734
GluI GCNGC 3 cut(s) 204, 467, 789
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 608
HapII CCGG 1 cut(s) 995
HhaI GCGC 1 cut(s) 735
Hin1II CATG 8 cut(s) 175, 361, 554, 728, 749, 868, 981, 1002
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HindIII AAGCTT 3 cut(s) 837, 896, 932
HinfI GANTC 3 cut(s) 288, 312, 569
HpaII CCGG 1 cut(s) 995
HphI GGTGA 2 cut(s) 1012, 1045
Hpy166II GTNNAC 3 cut(s) 430, 548, 886
Hpy188I TCNGA 4 cut(s) 190, 228, 517, 584
Hpy188III TCNNGA 8 cut(s) 110, 155, 294, 557, 590, 644, 865, 1009
Hpy8I GTNNAC 3 cut(s) 430, 548, 886
HpyAV CCTTC 5 cut(s) 169, 223, 684, 722, 1083
HpyCH4III ACNGT 2 cut(s) 91, 691
HpyCH4V TGCA 9 cut(s) 35, 41, 137, 254, 449, 466, 619, 791, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 995
HpyF3I CTNAG 3 cut(s) 116, 345, 784
Hsp92II CATG 8 cut(s) 175, 361, 554, 728, 749, 868, 981, 1002
HspAI GCGC 1 cut(s) 733
Kzo9I GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
LguI GCTCTTC 1 cut(s) 971
LmnI GCTCC 2 cut(s) 646, 1008
Lsp1109I GCAGC 3 cut(s) 215, 478, 775
LweI GCATC 4 cut(s) 28, 124, 194, 951
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 3 cut(s) 211, 313, 625
MalI GATC 6 cut(s) 153, 273, 489, 642, 1013, 1077
MboI GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
MboII GAAGA 3 cut(s) 135, 880, 958
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 2 cut(s) 151, 1011
MluCI AATT 8 cut(s) 217, 275, 326, 409, 525, 698, 738, 874
MlyI GAGTC 2 cut(s) 321, 578
MmeI TCCRAC 1 cut(s) 1066
MnlI CCTC 5 cut(s) 238, 290, 864, 1016, 1026
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 5 cut(s) 21, 144, 329, 794, 816
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 1 cut(s) 995
MspR9I CCNGG 1 cut(s) 679
MunI CAATTG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 449, 710
MvaI CCWGG 1 cut(s) 679
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 995
NcoI CCATGG 1 cut(s) 977
NdeI CATATG 1 cut(s) 985
NdeII GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
NlaIII CATG 8 cut(s) 175, 361, 554, 728, 749, 868, 981, 1002
NlaIV GGNNCC 2 cut(s) 541, 1004
NmuCI GTSAC 3 cut(s) 211, 313, 625
NspI RCATGY 1 cut(s) 554
PagI TCATGA 1 cut(s) 864
PciI ACATGT 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 971
PctI GAATGC 2 cut(s) 449, 710
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 3 cut(s) 205, 468, 790
PleI GAGTC 2 cut(s) 320, 577
PpsI GAGTC 2 cut(s) 320, 577
PpuMI RGGWCCY 1 cut(s) 539
PscI ACATGT 1 cut(s) 550
PsiI TTATAA 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 677
PspGI CCWGG 1 cut(s) 677
PspN4I GGNNCC 2 cut(s) 541, 1004
PspPI GGNCC 2 cut(s) 338, 539
PspPPI RGGWCCY 1 cut(s) 539
PstI CTGCAG 1 cut(s) 468
PsuI RGATCY 2 cut(s) 151, 1011
PvuII CAGCTG 1 cut(s) 788
SapI GCTCTTC 1 cut(s) 971
SaqAI TTAA 5 cut(s) 21, 144, 329, 794, 816
SatI GCNGC 3 cut(s) 204, 467, 789
Sau3AI GATC 6 cut(s) 151, 271, 487, 640, 1011, 1075
Sau96I GGNCC 2 cut(s) 338, 539
SchI GAGTC 2 cut(s) 321, 578
ScrFI CCNGG 1 cut(s) 679
SfaNI GCATC 4 cut(s) 28, 124, 194, 951
SfcI CTRYAG 2 cut(s) 464, 924
SinI GGWCC 2 cut(s) 338, 539
SmlI CTYRAG 3 cut(s) 44, 847, 1007
SmoI CTYRAG 3 cut(s) 44, 847, 1007
Sse9I AATT 8 cut(s) 217, 275, 326, 409, 525, 698, 738, 874
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 677
StyI CCWWGG 4 cut(s) 261, 439, 904, 977
TaaI ACNGT 2 cut(s) 91, 691
TaqI TCGA 4 cut(s) 371, 558, 693, 917
TasI AATT 8 cut(s) 217, 275, 326, 409, 525, 698, 738, 874
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 5 cut(s) 21, 144, 329, 794, 816
Tru9I TTAA 5 cut(s) 21, 144, 329, 794, 816
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 3 cut(s) 211, 313, 625
TseI GCWGC 3 cut(s) 203, 466, 788
Tsp45I GTSAC 3 cut(s) 211, 313, 625
TspGWI ACGGA 1 cut(s) 694
TspRI CASTG 1 cut(s) 945
Van91I CCANNNNNTGG 1 cut(s) 1085
VpaK11BI GGWCC 2 cut(s) 338, 539
XapI RAATTY 3 cut(s) 409, 698, 874
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.