RchiOBHm_Chr2g0105341
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000843
Physical Location & Seq
Forward (+)
16646440 .. 16650126
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47956

Sequence Viewer

Length: 3162 bp
ATGTGCTCTGCACGGGTCAGGGTCTCTACCCTAACAATTGGTATCAGAGCCCACCTCATGGGGCCGAGGAGCATTGGGAATCCACCACCATACTCGTCAGCACCGCCGCGTCCACCTGACCTAGATGAAGTGAGGCAGAAGAGGATTCAGATCGCCAAAGAACAAGTAGCGGAAAGGACAGCTGCGTGGCGCCGTGAACTCGAGAAAACTATGGCATCGTTCCAATCCGAGTTACTAAACGAGTTGAGGGGATTTCGATTGGAGCTCACAGCTCAGGTAATGGAGCCATCGGTGCCGACTTCTTCCATACCGATCATATCTCTGCCAGTGACTCAGCATGTCTCTTCGGGGCTGCAACTTGGGACCATCGATTGTTACAAATTGCCACCATCACCATCGGCCACGGCGGATCCCTACCCCTACGGCTACGAGCTGCAACAACCACCACCTCCGCCGCCTAGACCATCAGTCACCGTCCACAAGTTGAGTGAGTCTCCATCCCCAGCCCACATGAGGTACACCTACCAGAAACAACAACATTTCTCTTTGAACGATGATTGTGGTGCTTTGAGTCCTGTGTCTGTTGCTAAATTGACTGGTATTGATGAGAAAGTAGATACGGGGGAGGGAGAGAGTCTTAACAAGAGGGCAGACGTGAATAGTGGAGATGATAAAGAGTTCAATGAGCTTGGGAGTGTTACTGTTATGCAAAATACTGTTAAGCAAGATGAGCAGGGACCAAGTTTGTGTGGGAAAAGGATAGAACACCATGCACTCTACATGTTTGATAAAATGCTGCAATCAGATGGGATAGGTAATGCAGGAAGGGCCATTATTGCTCCTATGAGCATTCGAGACAAAGGTGGAGGACTCACTACTCATCGTGAAGTTGTTGATGCTTCTGATGAGATGGCGATATGTTCTGTCAGTGCTAAACAGGACGATGGTGTTTTCGCTAAAGATAAGAAGCAGGTTTCAGGAAGTGTGACTTACAATGGTCATGACATGCACGAATTTGTACCTCAGAGAAGTGTTGCATATATCAGTCAACATGATGTTCATATTGGAGAAATGACAGTTGCAGAAACCTTGGCTTTTTCGGCAAGATGCCAAGGCGCTGGAACTCGTTGTGAGATGCTAGAAGAGTTGAGTAAAAGGGAGAAAGAAGCAATAATTAAGCCTGATATAGACTTGGATATCCACATGAAGGGAATAGCATCAGAAAGCCAAAGGGCGGTATTTGTGTCAAGTTATAGTCTTAAGATTTTGGGACTGAATGGCTGTGGAGATACTTTGGTAGGGGATCAAATGATAAGGGGTATATCTAGAGGACAAAAGAAGCGTATCACAACTGGTGAGATGTTGGTTGGACCTGCTAAGGCACTATTTATGGACGAAATATCGACTAGTTTGGATAGTTCAACAACTTATCAGATAGTAAATTCAATCAAGCCATCTGTTCACATTCTCCAAGGGACTGCTTTCATCTCACTGCTGCAGCCAGCACCTGAGACTTATGATCTATTTGATGACATTTTTCTTCTTTCTGATGGTCAAATCGTGTACCAAGATCCCGGTGAATATGTTCTTGACTTTTTCAAATCCATGGGCTTCAGATGTCCCGAGAGAAAAGGTGTGGCCGATTTTCTGCAAGAAGTGACATCAGAGAAAGATCAGGAGCAGTATTGGGGAAGCAGAGATGAGCCTTACAGGTTCATCACAGTCGAAGAATTCTCAGAGGCATTCCAATCTTTTCATGTAGGGGGCACAATTACTAATGAACTTGCAACTCCATTTGACAAGACCAAGAGTCACCCAGCTGCATTATCAACCAATATATATGGTGTTAAAAAAGCAGAACTGGTGAAATCTTGTCTCTCAAAGGAGTTCTTGCTGATGAAGAGGAACTCATTTGTTTACCTTTTCAAGCTTACCCAACAATCAATATTGGCTCTGATTACCATGACACTATTCCTAAGGACTAAGATGCACCATGACACAGTGATTAATGGAGGACTTTATGTTGGTGCGTTGTTCTTCTCCTTGTATACTGTTGTGCTCAATGCAGTGGCAGAGATATCGATGACTGTAGCGAAGCTTCCAGTTTTTTATAAGGAAAGAAAGCTACTCTTTTTTCCACCATGGGCATATGCACTTCCCACGTGGATCCTCAAGATCCCTCTCACTTGTGTTGAAGTTGGTGTTTGGGTATTTATTTCCTATTATGTCATTGGATATGATCCAAATGTTGGAAGGTTGATCAAGCAATACCTTCTCCTCCTACTCATGCATCAAATGGCTAATGCATTATTCAAATTCATTGCTGGAACTAGTAGAAGCTTGACTATTGCTAATACACTTGCCTCATTCGCAACATGCATATATGTGGCTTTGGGAGGCTTTATCCTGTCAAGAGGTAATATAAAGAAATGGTGGAAATGGGGCTATTGGATATCACCTTTGATGTATGGGCATAATGCTATTGTAGTTAATGAGTTCCTTGGCAAGAGTTGGAGACATGAAATTCCAAACTCAACAGAATCATTAGGAATTGCTGTTCTGAAGTCTTGTGGATTTCGTACACATGCGTATTCATATTGGATTGGCACTGGAGCATTGGCTGGATACATGCTCTTTTTCAACATTTGTTACACTCTGGCTCTTACTTATCTAAACCCTTTGGACAAGCCACAAGATGTTAAATCAGAAGAATCTCAAGGCAATAAAGATGATGACAAAAGCTTGACCCCTCAAATCAACAAAGAGAAAGGAGATGGAAGTACTACTCATAACACGAAAAGAGGAATGGTTCTTCTATTTGAACCATATTCCATCACCTTCGATGAAAATCTCAATAGGACTCTGAAGCTTCCTAGTTCAGCAAGAGTTCATCCAATGTTCCATGTGTCCTTGTTGAAGAAGAAAATTGGTGATTCAGCTGTAGTCTCTGGCCACCTACCTCCAGACATTGATCCACACAATCCTAGGTGGTACCCGGCTAAAATATTGGACAGAAAGCTTTTCAAAAAAGGGAATGAGCCAGTTACCAAGTGGTTGATTCAATGGCTAGGAACAACTGAGGAGGAAGCTACATGGGAGGAATCTGAAGAAATCCTACAACTCAGGGTCTCTACCCTAACATCGGCTTCTCCAACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1053

Amino Acids

117.49

Weight (kDa)

6.73

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 318 - 466 2.8e-06 ABC transporter
ABC2_membrane PF01061 621 - 833 5e-46 ABC-2 type transporter
PDR_assoc PF08370 838 - 899 3.3e-25 Plant PDR ABC transporter associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2112
Acc36I ACCTGC 2 cut(s) 961, 1381
Acc65I GGTACC 1 cut(s) 2991
AccB1I GGYRCC 3 cut(s) 189, 292, 2991
AccB7I CCANNNNNTGG 2 cut(s) 58, 2249
AccI GTMKAC 1 cut(s) 2048
AccII CGCG 1 cut(s) 109
AciI CCGC 7 cut(s) 104, 107, 170, 407, 452, 455, 1235
AclWI GGATC 9 cut(s) 404, 417, 1311, 1565, 2161, 2170, 2174, 2234, 2966
AcoI YGGCCR 3 cut(s) 399, 1638, 2950
AcsI RAATTY 5 cut(s) 1013, 1441, 1730, 2315, 2523
AcuI CTGAAG 4 cut(s) 1597, 2582, 2885, 3126
AcvI CACGTG 1 cut(s) 2163
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 6 cut(s) 518, 1020, 1565, 2581, 2782, 2993
AfiI CCNNNNNNNGG 6 cut(s) 58, 513, 1207, 1234, 2249, 3142
AflII CTTAAG 1 cut(s) 1259
AflIII ACRYGT 1 cut(s) 780
AhdI GACNNNNNGTC 2 cut(s) 467, 1809
AhlI ACTAGT 2 cut(s) 1406, 2330
AjiI CACGTC 1 cut(s) 655
AloI GAACNNNNNNTCC 2 cut(s) 2541, 2573
Alw21I GWGCWC 3 cut(s) 8, 267, 2061
Alw26I GTCTC 9 cut(s) 28, 346, 498, 849, 1505, 1880, 2509, 2950, 3133
AlwI GGATC 9 cut(s) 404, 417, 1311, 1565, 2161, 2170, 2174, 2234, 2966
AlwNI CAGNNNCTG 1 cut(s) 1508
Ama87I CYCGRG 2 cut(s) 200, 1622
AoxI GGCC 5 cut(s) 62, 399, 828, 1638, 2950
ApeKI GCWGC 7 cut(s) 182, 352, 433, 796, 1495, 1498, 1820
ApoI RAATTY 5 cut(s) 1013, 1441, 1730, 2315, 2523
AseI ATTAAT 1 cut(s) 2007
Asp700I GAANNNNTTC 1 cut(s) 1584
Asp718I GGTACC 1 cut(s) 2991
AspA2I CCTAGG 1 cut(s) 2984
AspLEI GCGC 2 cut(s) 192, 1118
AspS9I GGNCC 5 cut(s) 62, 363, 737, 828, 1370
AsuC2I CCSGG 2 cut(s) 1575, 2996
AsuHPI GGTGA 9 cut(s) 384, 463, 1367, 1589, 1805, 1876, 2448, 2827, 2942
AvaI CYCGRG 2 cut(s) 200, 1622
AvaII GGWCC 3 cut(s) 363, 737, 1370
AvrII CCTAGG 1 cut(s) 2984
AxyI CCTNAGG 1 cut(s) 1976
BaeGI GKGCMC 1 cut(s) 1769
BaeI ACNNNNGTAYC 2 cut(s) 1281, 1314
BalI TGGCCA 1 cut(s) 2952
BamHI GGATCC 2 cut(s) 409, 2166
BanI GGYRCC 3 cut(s) 189, 292, 2991
BanII GRGCYC 2 cut(s) 52, 267
BarI GAAGNNNNNNTAC 4 cut(s) 2082, 2114, 3099, 3131
BbrPI CACGTG 1 cut(s) 2163
Bbv12I GWGCWC 3 cut(s) 8, 267, 2061
BbvI GCAGC 7 cut(s) 169, 339, 420, 783, 1482, 1510, 1807
BceAI ACGGC 3 cut(s) 177, 420, 439
BcgI CGANNNNNNTGC 2 cut(s) 2061, 2095
BciVI GTATCC 1 cut(s) 2618
BclI TGATCA 1 cut(s) 2259
BcnI CCSGG 2 cut(s) 1575, 2996
BcoDI GTCTC 9 cut(s) 28, 346, 498, 849, 1505, 1880, 2509, 2950, 3133
BcuI ACTAGT 2 cut(s) 1406, 2330
BfaI CTAG 9 cut(s) 122, 459, 1139, 1326, 1407, 2331, 2874, 2985, 3068
BfmI CTRYAG 3 cut(s) 1496, 2088, 2940
BfoI RGCGCY 2 cut(s) 193, 1119
BfrI CTTAAG 1 cut(s) 1259
BfuAI ACCTGC 2 cut(s) 961, 1381
BfuI GTATCC 1 cut(s) 2618
BisI GCNGC 9 cut(s) 107, 183, 353, 434, 455, 797, 1496, 1499, 1821
BlnI CCTAGG 1 cut(s) 2984
BlsI GCNGC 9 cut(s) 108, 184, 354, 435, 456, 798, 1497, 1500, 1822
BmcAI AGTACT 1 cut(s) 2782
Bme1390I CCNGG 2 cut(s) 1575, 2996
Bme18I GGWCC 3 cut(s) 363, 737, 1370
BmeRI GACNNNNNGTC 2 cut(s) 467, 1809
BmeT110I CYCGRG 2 cut(s) 200, 1622
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 5 cut(s) 62, 363, 737, 828, 1370
BmiI GGNNCC 9 cut(s) 63, 191, 285, 294, 364, 411, 738, 2168, 2993
BmrFI CCNGG 2 cut(s) 1575, 2996
BmsI GCATC 7 cut(s) 224, 886, 1097, 1125, 1226, 1977, 2299
BplI GAGNNNNNCTC 4 cut(s) 39, 71, 478, 510
BpmI CTGGAG 2 cut(s) 2631, 2946
Bpu10I CCTNAGC 2 cut(s) 273, 1377
BpuEI CTTGAG 2 cut(s) 2156, 2700
BpuMI CCSGG 2 cut(s) 1575, 2996
Bsa29I ATCGAT 2 cut(s) 369, 2081
BsaAI YACGTR 1 cut(s) 2163
BsaBI GATNNNNATC 2 cut(s) 149, 2847
BsaHI GRCGYC 1 cut(s) 190
BsaI GGTCTC 2 cut(s) 28, 3133
BsaJI CCNNGG 9 cut(s) 65, 402, 1089, 1111, 1471, 1605, 2141, 2500, 2984
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 513, 1207, 1234, 2249, 3142
Bse1I ACTGG 7 cut(s) 326, 601, 1357, 1866, 2102, 2614, 3041
Bse21I CCTNAGG 1 cut(s) 1976
Bse3DI GCAATG 1 cut(s) 2319
Bse8I GATNNNNATC 2 cut(s) 149, 2847
BseCI ATCGAT 2 cut(s) 369, 2081
BseDI CCNNGG 9 cut(s) 65, 402, 1089, 1111, 1471, 1605, 2141, 2500, 2984
BseGI GGATG 2 cut(s) 497, 2890
BseJI GATNNNNATC 2 cut(s) 149, 2847
BseLI CCNNNNNNNGG 6 cut(s) 58, 513, 1207, 1234, 2249, 3142
BseMI GCAATG 1 cut(s) 2319
BseMII CTCAG 7 cut(s) 287, 347, 1037, 1500, 1749, 3069, 3136
BseNI ACTGG 7 cut(s) 326, 601, 1357, 1866, 2102, 2614, 3041
BseRI GAGGAG 3 cut(s) 82, 2267, 3095
BseSI GKGCMC 1 cut(s) 1769
BseXI GCAGC 7 cut(s) 169, 339, 420, 783, 1482, 1510, 1807
BseYI CCCAGC 2 cut(s) 502, 1816
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 5 cut(s) 64, 401, 830, 1640, 2952
BshNI GGYRCC 3 cut(s) 189, 292, 2991
BshVI ATCGAT 2 cut(s) 369, 2081
BsiHKAI GWGCWC 3 cut(s) 8, 267, 2061
BsiHKCI CYCGRG 2 cut(s) 200, 1622
BsiSI CCGG 2 cut(s) 1575, 2996
BslFI GGGAC 5 cut(s) 376, 750, 1284, 1489, 1605
BslI CCNNNNNNNGG 6 cut(s) 58, 513, 1207, 1234, 2249, 3142
BsmAI GTCTC 9 cut(s) 28, 346, 498, 849, 1505, 1880, 2509, 2950, 3133
BsmFI GGGAC 5 cut(s) 376, 750, 1284, 1489, 1605
BsmI GAATGC 2 cut(s) 849, 1742
BsnI GGCC 5 cut(s) 64, 401, 830, 1640, 2952
Bso31I GGTCTC 2 cut(s) 28, 3133
BsoBI CYCGRG 2 cut(s) 200, 1622
Bsp1286I GDGCHC 5 cut(s) 8, 52, 267, 1769, 2061
Bsp19I CCATGG 2 cut(s) 1605, 2141
BspACI CCGC 7 cut(s) 104, 107, 170, 407, 452, 455, 1235
BspANI GGCC 5 cut(s) 64, 401, 830, 1640, 2952
BspCNI CTCAG 7 cut(s) 286, 346, 1036, 1501, 1748, 3070, 3135
BspDI ATCGAT 2 cut(s) 369, 2081
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 9 cut(s) 63, 191, 285, 294, 364, 411, 738, 2168, 2993
BspMAI CTGCAG 1 cut(s) 1500
BspMI ACCTGC 2 cut(s) 961, 1381
BspPI GGATC 9 cut(s) 404, 417, 1311, 1565, 2161, 2170, 2174, 2234, 2966
BspT107I GGYRCC 3 cut(s) 189, 292, 2991
BspTI CTTAAG 1 cut(s) 1259
BspTNI GGTCTC 2 cut(s) 28, 3133
BsrDI GCAATG 1 cut(s) 2319
BsrI ACTGG 7 cut(s) 326, 601, 1357, 1866, 2102, 2614, 3041
BssECI CCNNGG 9 cut(s) 65, 402, 1089, 1111, 1471, 1605, 2141, 2500, 2984
BssNAI GTATAC 1 cut(s) 2049
BssNI GRCGYC 1 cut(s) 190
BssT1I CCWWGG 7 cut(s) 1089, 1111, 1471, 1605, 2141, 2500, 2984
Bst1107I GTATAC 1 cut(s) 2049
Bst4CI ACNGT 8 cut(s) 475, 703, 718, 1078, 1723, 2002, 2053, 2089
Bst6I CTCTTC 4 cut(s) 134, 349, 1137, 1895
BstACI GRCGYC 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 1259
BstBAI YACGTR 1 cut(s) 2163
BstC8I GCNNGC 1 cut(s) 1503
BstDSI CCRYGG 3 cut(s) 402, 1605, 2141
BstF5I GGATG 2 cut(s) 497, 2890
BstFNI CGCG 1 cut(s) 109
BstH2I RGCGCY 2 cut(s) 193, 1119
BstHHI GCGC 2 cut(s) 192, 1118
BstMAI GTCTC 9 cut(s) 28, 346, 498, 849, 1505, 1880, 2509, 2950, 3133
BstMWI GCNNNNNNNGC 6 cut(s) 292, 730, 827, 836, 1100, 2369
BstNSI RCATGY 6 cut(s) 341, 784, 1009, 2379, 2588, 2632
BstSCI CCNGG 2 cut(s) 1573, 2994
BstSFI CTRYAG 3 cut(s) 1496, 2088, 2940
BstSLI GKGCMC 1 cut(s) 1769
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 7 cut(s) 169, 339, 420, 783, 1482, 1510, 1807
BstX2I RGATCY 4 cut(s) 409, 1570, 2166, 2175
BstXI CCANNNNNNTGG 1 cut(s) 1118
BstYI RGATCY 4 cut(s) 409, 1570, 2166, 2175
BstZ17I GTATAC 1 cut(s) 2049
Bsu15I ATCGAT 2 cut(s) 369, 2081
Bsu36I CCTNAGG 1 cut(s) 1976
BsuI GTATCC 1 cut(s) 2618
BsuRI GGCC 5 cut(s) 64, 401, 830, 1640, 2952
BsuTUI ATCGAT 2 cut(s) 369, 2081
BtgI CCRYGG 3 cut(s) 402, 1605, 2141
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 2 cut(s) 497, 2890
BtsI GCAGTG 2 cut(s) 1490, 2073
BtsIMutI CAGTG 6 cut(s) 333, 934, 1490, 2007, 2073, 2607
BveI ACCTGC 2 cut(s) 961, 1381
Cac8I GCNNGC 1 cut(s) 1503
CaiI CAGNNNCTG 1 cut(s) 1508
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 2 cut(s) 192, 1118
Cfr13I GGNCC 5 cut(s) 62, 363, 737, 828, 1370
ClaI ATCGAT 2 cut(s) 369, 2081
CseI GACGC 1 cut(s) 98
Csp6I GTAC 6 cut(s) 517, 1019, 1564, 2580, 2781, 2992
CviQI GTAC 6 cut(s) 517, 1019, 1564, 2580, 2781, 2992
DinI GGCGCC 1 cut(s) 191
DriI GACNNNNNGTC 2 cut(s) 467, 1809
EaeI YGGCCR 3 cut(s) 399, 1638, 2950
Eam1104I CTCTTC 4 cut(s) 134, 349, 1137, 1895
Eam1105I GACNNNNNGTC 2 cut(s) 467, 1809
EarI CTCTTC 4 cut(s) 134, 349, 1137, 1895
EciI GGCGGA 2 cut(s) 422, 441
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 7 cut(s) 1089, 1111, 1471, 1605, 2141, 2500, 2984
Eco24I GRGCYC 2 cut(s) 52, 267
Eco31I GGTCTC 2 cut(s) 28, 3133
Eco32I GATATC 3 cut(s) 1198, 2079, 2454
Eco47I GGWCC 3 cut(s) 363, 737, 1370
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 4 cut(s) 1597, 2582, 2885, 3126
Eco72I CACGTG 1 cut(s) 2163
Eco81I CCTNAGG 1 cut(s) 1976
Eco88I CYCGRG 2 cut(s) 200, 1622
EcoICRI GAGCTC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 1730
EcoRV GATATC 3 cut(s) 1198, 2079, 2454
EcoT14I CCWWGG 7 cut(s) 1089, 1111, 1471, 1605, 2141, 2500, 2984
EcoT22I ATGCAT 3 cut(s) 2292, 2308, 2381
EcoT38I GRGCYC 2 cut(s) 52, 267
EgeI GGCGCC 1 cut(s) 191
EheI GGCGCC 1 cut(s) 191
ErhI CCWWGG 7 cut(s) 1089, 1111, 1471, 1605, 2141, 2500, 2984
FalI AAGNNNNNCTT 6 cut(s) 973, 1005, 1874, 1906, 2114, 2146
FaqI GGGAC 5 cut(s) 376, 750, 1284, 1489, 1605
FauNDI CATATG 1 cut(s) 2149
FbaI TGATCA 1 cut(s) 2259
FblI GTMKAC 1 cut(s) 2048
Fnu4HI GCNGC 9 cut(s) 107, 183, 353, 434, 455, 797, 1496, 1499, 1821
FokI GGATG 2 cut(s) 484, 2877
FriOI GRGCYC 2 cut(s) 52, 267
Fsp4HI GCNGC 9 cut(s) 107, 183, 353, 434, 455, 797, 1496, 1499, 1821
FspBI CTAG 9 cut(s) 122, 459, 1139, 1326, 1407, 2331, 2874, 2985, 3068
GlaI GCGC 2 cut(s) 191, 1117
GluI GCNGC 9 cut(s) 107, 183, 353, 434, 455, 797, 1496, 1499, 1821
GsaI CCCAGC 2 cut(s) 506, 1820
GsuI CTGGAG 2 cut(s) 2631, 2946
HaeII RGCGCY 2 cut(s) 193, 1119
HaeIII GGCC 5 cut(s) 64, 401, 830, 1640, 2952
HapII CCGG 2 cut(s) 1575, 2996
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 192, 1118
Hin1I GRCGYC 1 cut(s) 190
Hin6I GCGC 2 cut(s) 190, 1116
HinP1I GCGC 2 cut(s) 190, 1116
HincII GTYRAC 1 cut(s) 1049
HindII GTYRAC 1 cut(s) 1049
HindIII AAGCTT 6 cut(s) 1928, 2096, 2338, 2740, 2867, 3017
HpaII CCGG 2 cut(s) 1575, 2996
HphI GGTGA 9 cut(s) 384, 463, 1367, 1589, 1805, 1876, 2448, 2827, 2942
HpyAV CCTTC 5 cut(s) 819, 1201, 2247, 2282, 2848
HpyCH4III ACNGT 8 cut(s) 475, 703, 718, 1078, 1723, 2002, 2053, 2089
HpyCH4IV ACGT 2 cut(s) 654, 2162
HpyF10VI GCNNNNNNNGC 6 cut(s) 292, 730, 827, 836, 1100, 2369
HpySE526I ACGT 2 cut(s) 654, 2162
Hsp92I GRCGYC 1 cut(s) 190
HspAI GCGC 2 cut(s) 190, 1116
KasI GGCGCC 1 cut(s) 189
KpnI GGTACC 1 cut(s) 2995
Ksp22I TGATCA 1 cut(s) 2259
LmnI GCTCC 6 cut(s) 69, 262, 283, 844, 1678, 2612
Lsp1109I GCAGC 7 cut(s) 169, 339, 420, 783, 1482, 1510, 1807
LweI GCATC 7 cut(s) 224, 886, 1097, 1125, 1226, 1977, 2299
MaeI CTAG 9 cut(s) 122, 459, 1139, 1326, 1407, 2331, 2874, 2985, 3068
MaeII ACGT 2 cut(s) 654, 2162
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 4 cut(s) 409, 1570, 2166, 2175
MhlI GDGCHC 5 cut(s) 8, 52, 267, 1769, 2061
MlsI TGGCCA 1 cut(s) 2952
MluNI TGGCCA 1 cut(s) 2952
Mly113I GGCGCC 1 cut(s) 190
MlyI GAGTC 7 cut(s) 325, 500, 580, 643, 864, 1819, 2854
MmeI TCCRAC 3 cut(s) 1348, 2230, 2492
Mox20I TGGCCA 1 cut(s) 2952
Mph1103I ATGCAT 3 cut(s) 2292, 2308, 2381
MroXI GAANNNNTTC 1 cut(s) 1584
MscI TGGCCA 1 cut(s) 2952
MseI TTAA 9 cut(s) 639, 720, 1176, 1260, 1848, 2007, 2490, 2700, 3160
MslI CAYNNNNRTG 1 cut(s) 2384
Msp20I TGGCCA 1 cut(s) 2952
MspA1I CMGCKG 3 cut(s) 182, 1820, 2939
MspCI CTTAAG 1 cut(s) 1259
MspI CCGG 2 cut(s) 1575, 2996
MspR9I CCNGG 2 cut(s) 1575, 2996
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 2 cut(s) 849, 1742
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 6 cut(s) 292, 730, 827, 836, 1100, 2369
NarI GGCGCC 1 cut(s) 190
NciI CCSGG 2 cut(s) 1575, 2996
NcoI CCATGG 2 cut(s) 1605, 2141
NdeI CATATG 1 cut(s) 2149
NlaIV GGNNCC 9 cut(s) 63, 191, 285, 294, 364, 411, 738, 2168, 2993
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 5 cut(s) 328, 469, 985, 1657, 1811
NsiI ATGCAT 3 cut(s) 2292, 2308, 2381
NspI RCATGY 6 cut(s) 341, 784, 1009, 2379, 2588, 2632
PaeR7I CTCGAG 1 cut(s) 200
PagI TCATGA 1 cut(s) 1000
PciI ACATGT 1 cut(s) 780
PctI GAATGC 2 cut(s) 849, 1742
PdmI GAANNNNTTC 1 cut(s) 1584
PfeI GAWTC 7 cut(s) 79, 145, 2540, 2711, 2933, 3058, 3101
PflMI CCANNNNNTGG 2 cut(s) 58, 2249
PkrI GCNGC 9 cut(s) 108, 184, 354, 435, 456, 798, 1497, 1500, 1822
PleI GAGTC 7 cut(s) 325, 499, 579, 642, 864, 1818, 2854
PluTI GGCGCC 1 cut(s) 193
PmaCI CACGTG 1 cut(s) 2163
PmlI CACGTG 1 cut(s) 2163
PpsI GAGTC 7 cut(s) 325, 499, 579, 642, 864, 1818, 2854
Ppu21I YACGTR 1 cut(s) 2163
PscI ACATGT 1 cut(s) 780
PshBI ATTAAT 1 cut(s) 2007
PsiI TTATAA 1 cut(s) 2112
Psp124BI GAGCTC 1 cut(s) 267
PspCI CACGTG 1 cut(s) 2163
PspFI CCCAGC 2 cut(s) 502, 1816
PspN4I GGNNCC 9 cut(s) 63, 191, 285, 294, 364, 411, 738, 2168, 2993
PspPI GGNCC 5 cut(s) 62, 363, 737, 828, 1370
PstI CTGCAG 1 cut(s) 1500
PstNI CAGNNNCTG 1 cut(s) 1508
PsuI RGATCY 4 cut(s) 409, 1570, 2166, 2175
PvuII CAGCTG 3 cut(s) 182, 1820, 2939
RsaI GTAC 6 cut(s) 518, 1020, 1565, 2581, 2782, 2993
RsaNI GTAC 6 cut(s) 517, 1019, 1564, 2580, 2781, 2992
RseI CAYNNNNRTG 1 cut(s) 2384
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 9 cut(s) 639, 720, 1176, 1260, 1848, 2007, 2490, 2700, 3160
SatI GCNGC 9 cut(s) 107, 183, 353, 434, 455, 797, 1496, 1499, 1821
Sau96I GGNCC 5 cut(s) 62, 363, 737, 828, 1370
ScaI AGTACT 1 cut(s) 2782
SchI GAGTC 7 cut(s) 325, 500, 580, 643, 864, 1819, 2854
ScrFI CCNGG 2 cut(s) 1575, 2996
SduI GDGCHC 5 cut(s) 8, 52, 267, 1769, 2061
SfaNI GCATC 7 cut(s) 224, 886, 1097, 1125, 1226, 1977, 2299
SfcI CTRYAG 3 cut(s) 1496, 2088, 2940
SfoI GGCGCC 1 cut(s) 191
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 3 cut(s) 363, 737, 1370
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 2384
SmlI CTYRAG 4 cut(s) 200, 1259, 2171, 2715
SmoI CTYRAG 4 cut(s) 200, 1259, 2171, 2715
SpeI ACTAGT 2 cut(s) 1406, 2330
SsiI CCGC 7 cut(s) 104, 107, 170, 407, 452, 455, 1235
SspDI GGCGCC 1 cut(s) 189
SspI AATATT 2 cut(s) 1947, 3006
SspMI CTAG 9 cut(s) 122, 459, 1139, 1326, 1407, 2331, 2874, 2985, 3068
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 1573, 2994
StyI CCWWGG 7 cut(s) 1089, 1111, 1471, 1605, 2141, 2500, 2984
TaaI ACNGT 8 cut(s) 475, 703, 718, 1078, 1723, 2002, 2053, 2089
TaiI ACGT 2 cut(s) 657, 2165
TaqI TCGA 8 cut(s) 201, 256, 369, 853, 1403, 1725, 2081, 2841
TatI WGTACW 1 cut(s) 2780
TauI GCSGC 2 cut(s) 109, 457
TfiI GAWTC 7 cut(s) 79, 145, 2540, 2711, 2933, 3058, 3101
Tru1I TTAA 9 cut(s) 639, 720, 1176, 1260, 1848, 2007, 2490, 2700, 3160
Tru9I TTAA 9 cut(s) 639, 720, 1176, 1260, 1848, 2007, 2490, 2700, 3160
TscAI CASTG 6 cut(s) 333, 934, 1497, 2007, 2073, 2614
TseFI GTSAC 5 cut(s) 328, 469, 985, 1657, 1811
TseI GCWGC 7 cut(s) 182, 352, 433, 796, 1495, 1498, 1820
Tsp45I GTSAC 5 cut(s) 328, 469, 985, 1657, 1811
TspRI CASTG 6 cut(s) 333, 934, 1497, 2007, 2073, 2614
Van91I CCANNNNNTGG 2 cut(s) 58, 2249
Vha464I CTTAAG 1 cut(s) 1259
VpaK11BI GGWCC 3 cut(s) 363, 737, 1370
VspI ATTAAT 1 cut(s) 2007
XapI RAATTY 5 cut(s) 1013, 1441, 1730, 2315, 2523
XbaI TCTAGA 1 cut(s) 1325
XceI RCATGY 6 cut(s) 341, 784, 1009, 2379, 2588, 2632
XcmI CCANNNNNNNNNTGG 1 cut(s) 3048
XhoI CTCGAG 1 cut(s) 200
XmaJI CCTAGG 1 cut(s) 2984
XmiI GTMKAC 1 cut(s) 2048
XmnI GAANNNNTTC 1 cut(s) 1584
XspI CTAG 9 cut(s) 122, 459, 1139, 1326, 1407, 2331, 2874, 2985, 3068
ZrmI AGTACT 1 cut(s) 2782
Zsp2I ATGCAT 3 cut(s) 2292, 2308, 2381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.