RLG00000008623
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000843
Physical Location & Seq
Reverse (-)
33609599 .. 33612368
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008623

Sequence Viewer

Length: 1224 bp
ATGCTTGTAAAACGGTGCCGTTTAACTCCTCAGAGAAGAATCTTTCTTTATTCAGCCATTAGAGCTTCAAACGCAAGCGCTGCAGCCGAGTCTTCTTCTGCTTCTCCGGGACTCTACTCGGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGCTCATCAACGATGGTGGAAACGTCGACATTGTGTCCGTCGAAGACGGCGTCGCTTCTCTCAAGCTCCAAGGGGCTTGTGGAAGCTGTCCTAGCTCAACAACCACCATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTTTGCAGATGCACTCAAGGATATTCAACAAGTCTTTGATGGAGAAAACAAAGAGACCACAGTTGAGATGTTATTGGCTATAGAGCTAAGTAGAAGAGAGAAAGATGCAAGTATTAAGCCAAATCCAGACTTGGATATCTACATGAAGGGAATAGCATCAGAAAGTAAGAGAGCAGCATTTGTGACAAATTATATTCTGAAGGTTTTGGGATTGGAGGTCTGTGCAAATACCTTGGTAGGGGATCAATTGATAAGGGGAATCTCTAGAGGACAAAAGAAGCGAGTCACAACCGGTGAGATGTTAGTTGGTCCTGCTAAGGCACTATTCATGGACGAAATAGCGACTGGTTTGGATAGTTCAACAACTTATCAAATAGTGAATTCCATCAAGCAATATGTTCACATTCTCCAAGGGACTGCATTCATCTCACTACTGCAGCCAGCACCCGAGACTTATGATCTATTTGATGACATTATTCTCCTTTCTGATGAGAGAAAAGGTGTGGCCGATTTCCTGCAAGAAGTGACATCAAGGAAAGATCAGGAGCAGTATTGGTTTAGCAGAGATGAACCTTCCAGAGCAGAACTGCTGAAAGCTAGTTTCTTAAGGGAGTTCTTGCTCATGAAGAGGAATTCATTTGTTTACCTTTTCAAGCTTATCCAACTCTCAATATTGTCTCTGATTACAATGACACTGTTCCTACGAACTGAGATGCACCGCGATTCAGCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATAGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGATTGTTTAAGCAATACCTTCTCCTCCTACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

408

Amino Acids

45.5

Weight (kDa)

7.04

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NifU PF01106 54 - 102 6.2e-17 NifU-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1046
AccB1I GGYRCC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 1183
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 1020
AciI CCGC 1 cut(s) 1018
AclWI GGATC 3 cut(s) 549, 1104, 1168
AcoI YGGCCR 2 cut(s) 120, 804
AcsI RAATTY 2 cut(s) 679, 931
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 207
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 537, 1183
AflII CTTAAG 1 cut(s) 904
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 6 cut(s) 69, 281, 326, 660, 952, 1129
AhdI GACNNNNNGTC 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 3 cut(s) 347, 743, 981
AlwI GGATC 3 cut(s) 549, 1104, 1168
Ama87I CYCGRG 1 cut(s) 746
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 2 cut(s) 120, 804
ApeKI GCWGC 5 cut(s) 80, 83, 473, 736, 1059
ApoI RAATTY 2 cut(s) 679, 931
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AsiGI ACCGGT 1 cut(s) 590
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 608
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 605, 1110, 1143
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 1 cut(s) 608
BanI GGYRCC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 84, 207
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 67, 95, 485, 748, 1046
BccI CCATC 3 cut(s) 164, 332, 692
BceAI ACGGC 2 cut(s) 3, 220
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 347, 743, 981
BfaI CTAG 3 cut(s) 249, 564, 897
BfmI CTRYAG 3 cut(s) 81, 378, 734
BfoI RGCGCY 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 904
BisI GCNGC 5 cut(s) 81, 84, 474, 737, 1060
BlsI GCNGC 5 cut(s) 82, 85, 475, 738, 1061
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 608
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 2 cut(s) 17, 1102
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 4 cut(s) 298, 394, 464, 1002
BpiI GAAGAC 2 cut(s) 84, 207
Bpu10I CCTNAGC 1 cut(s) 615
BpuEI CTTGAG 3 cut(s) 203, 299, 1090
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 226, 531, 709
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 1183
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 2 cut(s) 649, 1036
BseDI CCNNGG 3 cut(s) 226, 531, 709
BseLI CCNNNNNNNGG 2 cut(s) 537, 1183
BseMII CTCAG 2 cut(s) 44, 999
BseNI ACTGG 2 cut(s) 649, 1036
BseRI GAGGAG 3 cut(s) 18, 1093, 1201
BseXI GCAGC 5 cut(s) 67, 95, 485, 748, 1046
Bsh1236I CGCG 1 cut(s) 1020
BshFI GGCC 2 cut(s) 122, 806
BshNI GGYRCC 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 3 cut(s) 107, 591, 1093
BslFI GGGAC 2 cut(s) 123, 727
BslI CCNNNNNNNGG 2 cut(s) 537, 1183
BsmAI GTCTC 3 cut(s) 347, 743, 981
BsmFI GGGAC 2 cut(s) 123, 727
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 2 cut(s) 122, 806
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 5 cut(s) 541, 757, 838, 1109, 1173
BspACI CCGC 1 cut(s) 1018
BspANI GGCC 2 cut(s) 122, 806
BspCNI CTCAG 2 cut(s) 43, 1000
BspFNI CGCG 1 cut(s) 1020
BspHI TCATGA 2 cut(s) 921, 1220
BspLI GGNNCC 2 cut(s) 17, 1102
BspMAI CTGCAG 2 cut(s) 85, 738
BspPI GGATC 3 cut(s) 549, 1104, 1168
BspQI GCTCTTC 1 cut(s) 1069
BspT107I GGYRCC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 904
BspTNI GGTCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 2 cut(s) 649, 1036
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 3 cut(s) 226, 531, 709
BssMI GATC 5 cut(s) 541, 757, 838, 1109, 1173
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 3 cut(s) 226, 531, 709
Bst4CI ACNGT 4 cut(s) 15, 142, 361, 996
Bst6I CTCTTC 3 cut(s) 388, 920, 1069
BstACI GRCGYC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 904
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 76, 741, 1030
BstDEI CTNAG 4 cut(s) 30, 386, 615, 1008
BstFNI CGCG 1 cut(s) 1020
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 5 cut(s) 544, 760, 841, 1112, 1176
BstMAI GTCTC 3 cut(s) 347, 743, 981
BstMBI GATC 5 cut(s) 541, 757, 838, 1109, 1173
BstMWI GCNNNNNNNGC 7 cut(s) 62, 71, 80, 133, 249, 1056, 1093
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 3 cut(s) 81, 378, 734
BstUI CGCG 1 cut(s) 1020
BstV1I GCAGC 5 cut(s) 67, 95, 485, 748, 1046
BstV2I GAAGAC 2 cut(s) 84, 207
BstX2I RGATCY 1 cut(s) 1109
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 1109
BsuRI GGCC 2 cut(s) 122, 806
BtsIMutI CAGTG 2 cut(s) 992, 1043
Cac8I GCNNGC 3 cut(s) 76, 741, 1030
CciI TCATGA 2 cut(s) 921, 1220
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 1 cut(s) 608
CseI GACGC 1 cut(s) 196
CspAI ACCGGT 1 cut(s) 590
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 6 cut(s) 265, 442, 628, 922, 1097, 1221
DdeI CTNAG 4 cut(s) 30, 386, 615, 1008
DpnI GATC 5 cut(s) 543, 759, 840, 1111, 1175
DpnII GATC 5 cut(s) 541, 757, 838, 1109, 1173
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 120, 804
Eam1104I CTCTTC 3 cut(s) 388, 920, 1069
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 3 cut(s) 388, 920, 1069
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 3 cut(s) 226, 531, 709
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 608
Eco47III AGCGCT 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 2 cut(s) 679, 931
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 3 cut(s) 226, 531, 709
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 3 cut(s) 226, 531, 709
FaeI CATG 6 cut(s) 268, 445, 631, 925, 1100, 1224
FalI AAGNNNNNCTT 2 cut(s) 1048, 1080
FaqI GGGAC 2 cut(s) 123, 727
FatI CATG 6 cut(s) 264, 441, 627, 921, 1096, 1220
FauNDI CATATG 1 cut(s) 1083
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 5 cut(s) 81, 84, 474, 737, 1060
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 5 cut(s) 81, 84, 474, 737, 1060
FspBI CTAG 3 cut(s) 249, 564, 897
GlaI GCGC 1 cut(s) 79
GluI GCNGC 5 cut(s) 81, 84, 474, 737, 1060
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 2 cut(s) 122, 806
HapII CCGG 3 cut(s) 107, 591, 1093
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 6 cut(s) 268, 445, 631, 925, 1100, 1224
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 2 cut(s) 953, 1030
HinfI GANTC 6 cut(s) 39, 89, 111, 558, 582, 1022
HpaII CCGG 3 cut(s) 107, 591, 1093
HphI GGTGA 3 cut(s) 605, 1110, 1143
Hpy166II GTNNAC 3 cut(s) 184, 700, 943
Hpy188I TCNGA 5 cut(s) 33, 460, 498, 787, 981
Hpy188III TCNNGA 7 cut(s) 425, 564, 842, 876, 922, 1107, 1221
Hpy8I GTNNAC 3 cut(s) 184, 700, 943
Hpy99I CGWCG 3 cut(s) 185, 200, 212
HpyAV CCTTC 4 cut(s) 439, 493, 882, 1216
HpyCH4III ACNGT 4 cut(s) 15, 142, 361, 996
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 71, 80, 133, 249, 1056, 1093
HpyF3I CTNAG 4 cut(s) 30, 386, 615, 1008
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 6 cut(s) 268, 445, 631, 925, 1100, 1224
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 5 cut(s) 541, 757, 838, 1109, 1173
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 3 cut(s) 228, 844, 1106
Lsp1109I GCAGC 5 cut(s) 67, 95, 485, 748, 1046
LweI GCATC 4 cut(s) 298, 394, 464, 1002
MaeI CTAG 3 cut(s) 249, 564, 897
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 481, 583, 823
MalI GATC 5 cut(s) 543, 759, 840, 1111, 1175
MboI GATC 5 cut(s) 541, 757, 838, 1109, 1173
MboII GAAGA 8 cut(s) 48, 84, 87, 212, 405, 937, 1056, 1199
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 1 cut(s) 1109
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 5 cut(s) 128, 487, 545, 679, 931
MlyI GAGTC 3 cut(s) 98, 105, 591
MmeI TCCRAC 2 cut(s) 985, 1164
MnlI CCTC 7 cut(s) 39, 508, 560, 921, 1114, 1124, 1222
MseI TTAA 5 cut(s) 23, 291, 414, 905, 1196
MslI CAYNNNNRTG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 904
MspI CCGG 3 cut(s) 107, 591, 1093
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 719
MvnI CGCG 1 cut(s) 1020
MwoI GCNNNNNNNGC 7 cut(s) 62, 71, 80, 133, 249, 1056, 1093
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 1083
NdeII GATC 5 cut(s) 541, 757, 838, 1109, 1173
NlaIII CATG 6 cut(s) 268, 445, 631, 925, 1100, 1224
NlaIV GGNNCC 2 cut(s) 17, 1102
NmeAIII GCCGAG 2 cut(s) 98, 112
NmuCI GTSAC 3 cut(s) 481, 583, 823
PagI TCATGA 2 cut(s) 921, 1220
PciSI GCTCTTC 1 cut(s) 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 1 cut(s) 719
PfeI GAWTC 3 cut(s) 39, 558, 1022
PflFI GACNNNGTC 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 1183
PfoI TCCNGGA 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 5 cut(s) 82, 85, 475, 738, 1061
PleI GAGTC 3 cut(s) 97, 105, 590
PpsI GAGTC 3 cut(s) 97, 105, 590
PsiI TTATAA 1 cut(s) 1046
Psp124BI GAGCTC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 17, 1102
PspPI GGNCC 1 cut(s) 608
PstI CTGCAG 2 cut(s) 85, 738
PsuI RGATCY 1 cut(s) 1109
PsyI GACNNNGTC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 138
SalI GTCGAC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 5 cut(s) 23, 291, 414, 905, 1196
SatI GCNGC 5 cut(s) 81, 84, 474, 737, 1060
Sau3AI GATC 5 cut(s) 541, 757, 838, 1109, 1173
Sau96I GGNCC 1 cut(s) 608
SchI GAGTC 3 cut(s) 98, 105, 591
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 4 cut(s) 298, 394, 464, 1002
SfcI CTRYAG 3 cut(s) 81, 378, 734
SinI GGWCC 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 4 cut(s) 218, 314, 904, 1105
SmoI CTYRAG 4 cut(s) 218, 314, 904, 1105
Sse9I AATT 5 cut(s) 128, 487, 545, 679, 931
SsiI CCGC 1 cut(s) 1018
SspI AATATT 1 cut(s) 972
SspMI CTAG 3 cut(s) 249, 564, 897
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 3 cut(s) 226, 531, 709
TaaI ACNGT 4 cut(s) 15, 142, 361, 996
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 183, 198
TasI AATT 5 cut(s) 128, 487, 545, 679, 931
TfiI GAWTC 3 cut(s) 39, 558, 1022
Tru1I TTAA 5 cut(s) 23, 291, 414, 905, 1196
Tru9I TTAA 5 cut(s) 23, 291, 414, 905, 1196
TscAI CASTG 2 cut(s) 999, 1043
TseFI GTSAC 3 cut(s) 481, 583, 823
TseI GCWGC 5 cut(s) 80, 83, 473, 736, 1059
Tsp45I GTSAC 3 cut(s) 481, 583, 823
TspDTI ATGAA 7 cut(s) 281, 458, 616, 712, 882, 924, 938
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 999, 1043
Tth111I GACNNNGTC 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 1183
Vha464I CTTAAG 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 2 cut(s) 679, 931
XbaI TCTAGA 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 2 cut(s) 233, 268
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 3 cut(s) 249, 564, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.