MD10G1175000.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
26736095 .. 26743270
7176 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1175000.v1.1.491

Sequence Viewer

Length: 4302 bp
ATGGAGATCAGTTGTGATATTCAGAAAGCTGGCCACAGTTTTAGACGAAGTGGTTCTTCCTTCTGGATTGACAATGGCAGCGGAGTTTTCTCAACGTCTTCGCACGGAGAGGACGATGAGGAAGCTCTCAAATGGGCTGCTCTTCAGAGACTTCCAACGTTTCAGCGCTTGAAGAAAGGCCTGCTCGCTACTCCTCAAGGGGAGACCAACGAAGTTGACGTGAGCAATCTTGAAGTGAAAGAAAGGAAGAATTTGATCGAGCGGTTAGTTGGAGTAGCCGAGGAGGATCATGAGAACTTCTTGTTGAGACTTAAGAACCGCATTGATAGAGTTGGAATTAATCTTCCGAAAATTGAAGTTAGATTCCAGCATTTGAAAATTGCAGCTGAAGCTTATGCAGGAAGCAGGGCTCTGCCTACAGTTTTTAATTACTGTGTTAATTTAGTGGAGGGTTTGTTGAACTCCGTTCATATTCTTCCTAGCAAGAAAAAGCACTTGTCTATCCTCAAAGATGTTAGTGGGATCATTAGGCCTTGCAGAATGACACTGCTTTTGGGTCCTCCGAGTTCCGGAAAGACCACGCTGTTGTTGGCTTTGGCTGGAGAGCTTGACCGGGATCTTCAGTTTTCAGGACGTGTGACCTACAATGGTCACGGCATGCATGAGTTTGTGCCTCAGAGGACTGCTGCCTATATCAGCCAACATGATGTTCATATGGGAGAATTGACAGTCGGAGAAACATTGCACTTCTCTGCAAGATGCCAAGGGGTCGGAGCACGTTATGAGATCCTTGTAGAGTTAAGTAGACGAGAGAAAGAAGCGAATATTAAGCCGGATGCAGACATAGATATCTACATGAAGGCAGTGGCAACAGAAGGCCAGAGGGTACAAGTGGTGACAGATTATATACTAAAGATTTTGGGATTAGAGGGATGTGCAGATACCTTGGTAGGGGATAACTTAATAAGGGGCATCTCCGGTGGACAAAAGAAACGACTCACAACTGGTGAGATGTTGGTTGGACCGGCTAAGGCATTGTTCATGGACGAAATATCTACGGGTTTGGATAGCTCAACGACCTATCAAATCGTGAATTCGATCAAGCAATATGTTCACATTCTCAATGGGACTGCATTCATCTCACTGCTGCAACCAGCACCTGAGACTTATGAACTATTTGATGACATTGTTCTCCTTTCCGATGGTCACATTGTGTACCAAGGTCCTCGTGAAAATGTTCTTGAATTTTTCGAATCCATGGGGTTCAGATGTCCTGAGAGGAAAGGCGTGGCGGACTTCCTGCAAGAAGTGACATCAAGGAAAGATCAGAAGCAGTATTGGGCAAGCAGAGATGAGCCTTACACGTTCATCACGGTCGAAGAATTTGTCGAGGCATTCCAATCGTTCCATGTCGGGCGCAAACTTAGAGATGAACTCGCAACTCCATTTGACAAGGCCAACAGCCACCCAGCTGCATTAACAACAAAAAGATATGGCGTTAGTAAAACTGAACTGTTGAAAGCTTGCTTTGCAAGGGAGTTCTTGCTCATGAAGAGGAACTCATTTGTCTACCTTTTCAAGCTTGCCCAACTCTCAATCTTGGCTATGATTACAATGACATTGTTCCTACGAACTGAGATGCATCGCAATTCAGTAGATGACGGGGTAATTTATGCCGGTGCTTTGTTCTTCTCCCTGGTTGCTGTTATGTTCAATGGACTGGCAGAGCTTTCGATGACTGTTACAAAGCTCCCTGTATTTTATAAGCAGAGAAACCTCCTCTTCTTTCCGCCGTGGACATATACCCTTCCCTCGTGGATCCTAAAGATCCCTATCACCTGTGTTGAAGTTGTGGTTTGGGTATTTATGACCTATTATGTCATCGGATATGATCCAAATGTCGGAAGGTTGTTTAAGCAATGGCTTCTACTCTTACTCATTAATCAGATGGCTTCGGGGTTGTTCCGATTCATTGCTGGAGTTGGTAGAAGCATGACTATTGCAAGCACATTCGGATCATTTGCACTTGTCATGCTTTTCTCCTTGGGTGGTTTTGTTCTGTCAAGAGACGATATAAAGAAATGGTGGATGTGGGGCTACTGGATATCGCCTTTGATGTACGGACAGAATGCAATAGTAGTCAATGAGTTCCTCGGAAAGAGTTGGAGACATGTTCTTCCGAACTCAACAGAACCATTAGGAGTCGCTGTTCTGAAGTCACGCGGATTCTTCACAGAGCCTCGTTGGTATTGGATTGGCGCGGGAGTATTGGCTGGATACATGATTATATTCAATTTCCTTTTCACTTTGGCTCTCACTTACCTAAAGCCAATCGGGAAGCCACAGGCTGTTAAGTTGGAAGATCCTATCTCGACTCCTCAAATTAGTAGAGAAAAAGGGAATGGAAGTAACTCCTCCAGGTCTTCCTCAATTACAAAAGAAGCTACTAATGACGCAAATGGTAACAAGAAAAGAGGAATGGTTCTTCCGTTCGAACCACATTCCATCACCTTTGATGAAATCACATACTCCGTGGACATGCCACAGGAAATGAAGAATCAAGGTGTTCCCGAGGATAAACTGGTGCTCATTAGGCGCGTGAGTGGTGCTTTTAGGCCTGGTGTTTTGACAGCTCTAATGGGAGTGAGTGGGGCTGGTAAAACAACTCTAATGGACGTACTAGCCGGTAGAAAAACTGGAGGATATATTGAGGGAAATATCACAATTTCCGGGTACCCAAAAAAGCAGGAATCGTTTGCCAGGATTTCTGGATATTGTGAGCAGAATGACATCCACTCTCCTCATGTTACTGTCTATGAATCCTTGATGTACTCAGCATGGCTGCGTTTATCTTCAGAAATCGATTCTGAAACCAGGAAGATGTTCGTTGAGGAAGTTATGGGACTTGTGGAGCTGAACCCGTTGAGGCAAGCATTAGTAGGGTTGCCTGGTGCGAGCGGTCTTTCAACTGAGCAGCGTAAGAGGCTGACCATTGCGGTTGAACTAGTGGCTAACCCCTCCATAATATTCATGGATGAACCGACTTCAGGCTTGGACGCAAGAGCTGCAGCCATTGTTATGCGAGCAGTTAGGAACACTGTGGACACTGGAAGAACAGTCGTCTGCACCATCCATCAGCCAAGCATTGACATATTTGATGCTTTCGATGAGCTATTCTTACTGAAGAAAGGAGGACAAGAGCTCTACGTAGGACCATTAGGCCGCCATTCTTGCAATTTGATCAAGTACTTTGAGGGGATCGATAACGTCAGTAAAATTAGGGATGGCTACAATCCAGCAACATGGATGTTGGAAGTCACTTCGTCAGCCAAAGAAATAGCTATGGAGATTGATTTTGCTGAAGTGTATAAGAAATCAGAACTGTACAGGAGAAACAAAGCACTTATTGCAGAACTAAGCAACCCTGCTTCTGGTTCTAAGGATCTTCATTTTCCTACTCAATACTCTCAGCCCTTTTTAACCCAATGCGTAGCTTGCTTATGGAAACAACATTGGTCCTATTGGCGCAATCCGCCATACACGGCCATCAGGTTGATCTACACAACCATCGTAGCATTGATGTTCGGGACAATGTTCTGGAACCTTGGCTCCAAAACAACGAAAGAAAAGGATCTCTTCAATGCAATTGGTTCAATGTACGCTGCTGTTCTCTTTCTCGGTATCAAAAATTCTACAACCGTGCAGCCTGTTGTGGACGTTGAAAGAACAGTCTTCTACAGAGAACGAGCAGCTGGAATGTATTCTGCCTTGGCATACGCCTTCGCACAGGTTACAATTGAGATCCCTTACGTTTTTGTACAAGCCCTTGTCTATAGTGTCATAGTTTACGCAATGATCGGGTTTGAATGGACTCTGGCTAAATTCTTGTGGTACTTATTCTTCATGTATTTCACATTTTTGTACTTCACCTACTACGGCATGATGGGAGTGGCCTTGACGCCGAACCAACACATAGCCGCTATAAATTCCAGCGCATTTTACGCAATATGGAATGTCTTCTCGGGGTTCATAATCCCACGGACTAGGATTCCTGTATGGTGGAGATGGTACTATTGGGCGTGTCCGATGGCCTGGACCTTGTACGGACTGGCTACATCGCAGTTTGGAGATATACAGGACGAGCTCGAGACGGGTGCAACAGTGGAAGAATTCATGAGGCAATACTTCGGTTTCAAGCAAGAATTTATCGGAGTGGTTGCAGCTGTGGTTGTTGGATTCGCTCTACTCTTTGCACTTATCTTTGCCTTGTCCATCAAGATGTTGAGTTTCCAGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1434

Amino Acids

161.64

Weight (kDa)

8.48

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 94 - 143 1.3e-06 ABC-transporter N-terminal
ABC_tran PF00005 169 - 350 3.6e-14 ABC transporter
ABC2_membrane_7 PF19055 384 - 434 5.3e-06 ABC-2 type transporter
ABC2_membrane PF01061 505 - 717 1.5e-50 ABC-2 type transporter
PDR_assoc PF08370 722 - 784 6.5e-29 Plant PDR ABC transporter associated
ABC_tran PF00005 865 - 1016 3.9e-20 ABC transporter
ABC2_membrane PF01061 1161 - 1375 3.5e-60 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1764
Acc65I GGTACC 1 cut(s) 2733
AccB1I GGYRCC 1 cut(s) 2733
AccBSI CCGCTC 2 cut(s) 262, 2958
AccI GTMKAC 2 cut(s) 805, 1569
AccII CGCG 3 cut(s) 2223, 2261, 2598
AccIII TCCGGA 1 cut(s) 569
AclI AACGTT 1 cut(s) 158
AcoI YGGCCR 2 cut(s) 31, 3543
AcsI RAATTY 9 cut(s) 250, 1093, 1244, 1382, 3688, 3881, 3985, 4169, 4202
AcuI CTGAAG 8 cut(s) 128, 408, 605, 2234, 2838, 3030, 3203, 3381
AcyI GRCGYC 1 cut(s) 3959
AdeI CACNNNGTG 1 cut(s) 1213
AfeI AGCGCT 1 cut(s) 167
AfiI CCNNNNNNNGG 5 cut(s) 569, 951, 1901, 3047, 3431
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 3 cut(s) 634, 1362, 2170
AhlI ACTAGT 1 cut(s) 3004
AjiI CACGTC 2 cut(s) 220, 635
AjnI CCWGG 7 cut(s) 1695, 2417, 2617, 2759, 2873, 2947, 4091
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AloI GAACNNNNNNTCC 4 cut(s) 2193, 2225, 3593, 3625
Alw21I GWGCWC 4 cut(s) 778, 2589, 3204, 4146
Alw26I GTCTC 7 cut(s) 142, 197, 301, 1157, 2061, 2161, 4142
AlwNI CAGNNNCTG 1 cut(s) 1160
Ama87I CYCGRG 3 cut(s) 2570, 4021, 4145
Aor13HI TCCGGA 1 cut(s) 569
Aor51HI AGCGCT 1 cut(s) 167
ApoI RAATTY 9 cut(s) 250, 1093, 1244, 1382, 3688, 3881, 3985, 4169, 4202
ArsI GACNNNNNNTTYG 4 cut(s) 535, 567, 1371, 1403
AseI ATTAAT 2 cut(s) 339, 1941
Asp700I GAANNNNTTC 5 cut(s) 52, 1236, 2882, 3760, 4016
Asp718I GGTACC 1 cut(s) 2733
AspLEI GCGC 6 cut(s) 168, 1419, 2261, 2598, 3528, 3995
AspS9I GGNCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
AsuC2I CCSGG 2 cut(s) 614, 2731
AsuHPI GGTGA 5 cut(s) 907, 1019, 1828, 2500, 3919
AsuII TTCGAA 2 cut(s) 1251, 2493
AvaI CYCGRG 3 cut(s) 2570, 4021, 4145
AvaII GGWCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BalI TGGCCA 1 cut(s) 33
BamHI GGATCC 1 cut(s) 1818
BanI GGYRCC 1 cut(s) 2733
BanII GRGCYC 3 cut(s) 412, 3204, 4146
BarI GAAGNNNNNNTAC 2 cut(s) 3884, 3916
BauI CACGAG 2 cut(s) 1227, 1813
BbsI GAAGAC 4 cut(s) 90, 2415, 3724, 4009
Bbv12I GWGCWC 4 cut(s) 778, 2589, 3204, 4146
BceAI ACGGC 4 cut(s) 670, 1777, 3558, 3952
BcgI CGANNNNNNTGC 6 cut(s) 1383, 1417, 1713, 1747, 4136, 4170
BciT130I CCWGG 7 cut(s) 1697, 2419, 2619, 2761, 2875, 2949, 4093
BciVI GTATCC 1 cut(s) 2270
BclI TGATCA 1 cut(s) 3240
BcnI CCSGG 2 cut(s) 614, 2731
BcoDI GTCTC 7 cut(s) 142, 197, 301, 1157, 2061, 2161, 4142
BcuI ACTAGT 1 cut(s) 3004
BfaI CTAG 4 cut(s) 480, 2681, 3005, 4044
BfmI CTRYAG 4 cut(s) 417, 3066, 3736, 3832
BfoI RGCGCY 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 2270
BmcAI AGTACT 1 cut(s) 3248
Bme1390I CCNGG 9 cut(s) 614, 1697, 2419, 2619, 2731, 2761, 2875, 2949, 4093
Bme18I GGWCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
BmeT110I CYCGRG 3 cut(s) 2570, 4021, 4145
BmgBI CACGTC 2 cut(s) 220, 635
BmgT120I GGNCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
BmiI GGNNCC 5 cut(s) 558, 1820, 2735, 3602, 3610
BmrFI CCNGG 9 cut(s) 614, 1697, 2419, 2619, 2731, 2761, 2875, 2949, 4093
BmsI GCATC 6 cut(s) 749, 826, 981, 1629, 1651, 3148
BpiI GAAGAC 4 cut(s) 90, 2415, 3724, 4009
BplI GAGNNNNNCTC 2 cut(s) 1419, 1451
BpmI CTGGAG 4 cut(s) 621, 1998, 2401, 2718
Bpu10I CCTNAGC 1 cut(s) 1029
Bpu14I TTCGAA 2 cut(s) 1251, 2493
BpuEI CTTGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 614, 2731
Bsa29I ATCGAT 2 cut(s) 2862, 3261
BsaAI YACGTR 1 cut(s) 3208
BsaBI GATNNNNATC 1 cut(s) 1832
BsaHI GRCGYC 1 cut(s) 3959
BsaI GGTCTC 1 cut(s) 197
BsaWI WCCGGW 2 cut(s) 569, 977
BsaXI ACNNNNNCTCC 6 cut(s) 440, 470, 2193, 2223, 3593, 3623
Bsc4I CCNNNNNNNGG 5 cut(s) 569, 951, 1901, 3047, 3431
Bse118I RCCGGY 3 cut(s) 1024, 1676, 2684
Bse1I ACTGG 7 cut(s) 1009, 1725, 2105, 2586, 2701, 3112, 4113
Bse3DI GCAATG 5 cut(s) 740, 1925, 1971, 2991, 3858
Bse8I GATNNNNATC 1 cut(s) 1832
BseAI TCCGGA 1 cut(s) 569
BseBI CCWGG 7 cut(s) 1697, 2419, 2619, 2761, 2875, 2949, 4093
BseCI ATCGAT 2 cut(s) 2862, 3261
BseGI GGATG 8 cut(s) 841, 938, 2094, 2790, 3040, 3129, 3289, 3312
BseJI GATNNNNATC 1 cut(s) 1832
BseLI CCNNNNNNNGG 5 cut(s) 569, 951, 1901, 3047, 3431
BseMI GCAATG 5 cut(s) 740, 1925, 1971, 2991, 3858
BseMII CTCAG 7 cut(s) 689, 1152, 1266, 1626, 2847, 2961, 3482
BseNI ACTGG 7 cut(s) 1009, 1725, 2105, 2586, 2701, 3112, 4113
BseRI GAGGAG 6 cut(s) 183, 296, 1769, 2367, 2404, 2790
BseYI CCCAGC 1 cut(s) 1468
BsgI GTGCAG 3 cut(s) 957, 3109, 3722
Bsh1236I CGCG 3 cut(s) 2223, 2261, 2598
Bsh1285I CGRYCG 1 cut(s) 1377
BshNI GGYRCC 1 cut(s) 2733
BshVI ATCGAT 2 cut(s) 2862, 3261
BsiEI CGRYCG 1 cut(s) 1377
BsiHKAI GWGCWC 4 cut(s) 778, 2589, 3204, 4146
BsiHKCI CYCGRG 3 cut(s) 2570, 4021, 4145
BsiSI CCGG 8 cut(s) 570, 613, 833, 978, 1025, 1677, 2685, 2730
BslFI GGGAC 3 cut(s) 1141, 2916, 3601
BslI CCNNNNNNNGG 5 cut(s) 569, 951, 1901, 3047, 3431
BsmAI GTCTC 7 cut(s) 142, 197, 301, 1157, 2061, 2161, 4142
BsmBI CGTCTC 2 cut(s) 2061, 4142
BsmFI GGGAC 3 cut(s) 1141, 2916, 3601
BsmI GAATGC 3 cut(s) 1133, 1394, 2134
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 3 cut(s) 2570, 4021, 4145
Bsp119I TTCGAA 2 cut(s) 1251, 2493
Bsp1286I GDGCHC 5 cut(s) 412, 778, 2589, 3204, 4146
Bsp13I TCCGGA 1 cut(s) 569
Bsp1407I TGTACA 2 cut(s) 3384, 3817
Bsp19I CCATGG 1 cut(s) 1257
BspCNI CTCAG 7 cut(s) 688, 1153, 1267, 1627, 2846, 2962, 3481
BspDI ATCGAT 2 cut(s) 2862, 3261
BspEI TCCGGA 1 cut(s) 569
BspFNI CGCG 3 cut(s) 2223, 2261, 2598
BspHI TCATGA 3 cut(s) 289, 1548, 4173
BspLI GGNNCC 5 cut(s) 558, 1820, 2735, 3602, 3610
BspMAI CTGCAG 1 cut(s) 3070
BspQI GCTCTTC 1 cut(s) 147
BspT104I TTCGAA 2 cut(s) 1251, 2493
BspT107I GGYRCC 1 cut(s) 2733
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 197
BsrBI CCGCTC 2 cut(s) 262, 2958
BsrDI GCAATG 5 cut(s) 740, 1925, 1971, 2991, 3858
BsrFI RCCGGY 3 cut(s) 1024, 1676, 2684
BsrGI TGTACA 2 cut(s) 3384, 3817
BsrI ACTGG 7 cut(s) 1009, 1725, 2105, 2586, 2701, 3112, 4113
BssAI RCCGGY 3 cut(s) 1024, 1676, 2684
BssNI GRCGYC 1 cut(s) 3959
BssSI CACGAG 2 cut(s) 1227, 1813
BssT1I CCWWGG 7 cut(s) 763, 945, 1219, 1257, 2043, 3604, 3768
Bst2BI CACGAG 2 cut(s) 1227, 1813
Bst2UI CCWGG 7 cut(s) 1697, 2419, 2619, 2761, 2875, 2949, 4093
Bst6I CTCTTC 4 cut(s) 147, 1547, 1787, 3641
BstACI GRCGYC 1 cut(s) 3959
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 2 cut(s) 3065, 3407
BstAUI TGTACA 2 cut(s) 3384, 3817
BstBAI YACGTR 1 cut(s) 3208
BstBI TTCGAA 2 cut(s) 1251, 2493
BstDSI CCRYGG 4 cut(s) 1257, 1793, 2532, 4037
BstF5I GGATG 8 cut(s) 841, 938, 2094, 2790, 3040, 3129, 3289, 3312
BstFNI CGCG 3 cut(s) 2223, 2261, 2598
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 6 cut(s) 168, 1419, 2261, 2598, 3528, 3995
BstMAI GTCTC 7 cut(s) 142, 197, 301, 1157, 2061, 2161, 4142
BstMCI CGRYCG 1 cut(s) 1377
BstNI CCWGG 7 cut(s) 1697, 2419, 2619, 2761, 2875, 2949, 4093
BstNSI RCATGY 3 cut(s) 661, 2174, 2542
BstSCI CCNGG 9 cut(s) 612, 1695, 2417, 2617, 2729, 2759, 2873, 2947, 4091
BstSFI CTRYAG 4 cut(s) 417, 3066, 3736, 3832
BstSNI TACGTA 1 cut(s) 3208
BstUI CGCG 3 cut(s) 2223, 2261, 2598
BstV2I GAAGAC 4 cut(s) 90, 2415, 3724, 4009
BstX2I RGATCY 8 cut(s) 616, 786, 1818, 1827, 2362, 3442, 3631, 3801
BstXI CCANNNNNNTGG 1 cut(s) 3303
BstYI RGATCY 8 cut(s) 616, 786, 1818, 1827, 2362, 3442, 3631, 3801
Bsu15I ATCGAT 2 cut(s) 2862, 3261
BsuI GTATCC 1 cut(s) 2270
BsuTUI ATCGAT 2 cut(s) 2862, 3261
BtgI CCRYGG 4 cut(s) 1257, 1793, 2532, 4037
BtgZI GCGATG 2 cut(s) 1628, 4101
BtrI CACGTC 2 cut(s) 220, 635
BtsCI GGATG 8 cut(s) 841, 938, 2094, 2790, 3040, 3129, 3289, 3312
BtsI GCAGTG 3 cut(s) 545, 870, 1142
BtsIMutI CAGTG 6 cut(s) 545, 870, 1142, 3096, 3105, 4167
CaiI CAGNNNCTG 1 cut(s) 1160
CciI TCATGA 3 cut(s) 289, 1548, 4173
CfoI GCGC 6 cut(s) 168, 1419, 2261, 2598, 3528, 3995
Cfr10I RCCGGY 3 cut(s) 1024, 1676, 2684
Cfr13I GGNCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
ClaI ATCGAT 2 cut(s) 2862, 3261
CseI GACGC 3 cut(s) 2462, 3065, 3967
DraIII CACNNNGTG 1 cut(s) 1213
EaeI YGGCCR 2 cut(s) 31, 3543
Eam1104I CTCTTC 4 cut(s) 147, 1547, 1787, 3641
EarI CTCTTC 4 cut(s) 147, 1547, 1787, 3641
EciI GGCGGA 3 cut(s) 1307, 1779, 3522
Ecl136II GAGCTC 2 cut(s) 3202, 4144
Eco105I TACGTA 1 cut(s) 3208
Eco130I CCWWGG 7 cut(s) 763, 945, 1219, 1257, 2043, 3604, 3768
Eco147I AGGCCT 3 cut(s) 180, 532, 2617
Eco24I GRGCYC 3 cut(s) 412, 3204, 4146
Eco31I GGTCTC 1 cut(s) 197
Eco32I GATATC 2 cut(s) 850, 2106
Eco47I GGWCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
Eco47III AGCGCT 1 cut(s) 167
Eco53kI GAGCTC 2 cut(s) 3202, 4144
Eco57I CTGAAG 8 cut(s) 128, 408, 605, 2234, 2838, 3030, 3203, 3381
Eco88I CYCGRG 3 cut(s) 2570, 4021, 4145
EcoICRI GAGCTC 2 cut(s) 3202, 4144
EcoO109I RGGNCCY 2 cut(s) 557, 1223
EcoRI GAATTC 2 cut(s) 1093, 4169
EcoRII CCWGG 7 cut(s) 1695, 2417, 2617, 2759, 2873, 2947, 4091
EcoRV GATATC 2 cut(s) 850, 2106
EcoT14I CCWWGG 7 cut(s) 763, 945, 1219, 1257, 2043, 3604, 3768
EcoT22I ATGCAT 2 cut(s) 663, 1644
EcoT38I GRGCYC 3 cut(s) 412, 3204, 4146
ErhI CCWWGG 7 cut(s) 763, 945, 1219, 1257, 2043, 3604, 3768
Esp3I CGTCTC 2 cut(s) 2061, 4142
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 3620, 3652
FaqI GGGAC 3 cut(s) 1141, 2916, 3601
FauI CCCGC 1 cut(s) 2254
FauNDI CATATG 1 cut(s) 714
FbaI TGATCA 1 cut(s) 3240
FblI GTMKAC 2 cut(s) 805, 1569
FokI GGATG 8 cut(s) 848, 945, 2101, 2777, 3047, 3116, 3296, 3319
FriOI GRGCYC 3 cut(s) 412, 3204, 4146
FspBI CTAG 4 cut(s) 480, 2681, 3005, 4044
GlaI GCGC 6 cut(s) 167, 1418, 2260, 2597, 3527, 3994
GsaI CCCAGC 1 cut(s) 1472
GsuI CTGGAG 4 cut(s) 621, 1998, 2401, 2718
HaeII RGCGCY 1 cut(s) 169
HapII CCGG 8 cut(s) 570, 613, 833, 978, 1025, 1677, 2685, 2730
HgaI GACGC 3 cut(s) 2462, 3065, 3967
HhaI GCGC 6 cut(s) 168, 1419, 2261, 2598, 3528, 3995
Hin1I GRCGYC 1 cut(s) 3959
Hin6I GCGC 6 cut(s) 166, 1417, 2259, 2596, 3526, 3993
HinP1I GCGC 6 cut(s) 166, 1417, 2259, 2596, 3526, 3993
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 3 cut(s) 390, 1521, 1580
HpaII CCGG 8 cut(s) 570, 613, 833, 978, 1025, 1677, 2685, 2730
HphI GGTGA 5 cut(s) 907, 1019, 1828, 2500, 3919
HpyAV CCTTC 6 cut(s) 70, 853, 869, 1817, 1899, 3790
Hsp92I GRCGYC 1 cut(s) 3959
HspAI GCGC 6 cut(s) 166, 1417, 2259, 2596, 3526, 3993
Kpn2I TCCGGA 1 cut(s) 569
KpnI GGTACC 1 cut(s) 2737
Ksp22I TGATCA 1 cut(s) 3240
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 4 cut(s) 773, 1755, 2911, 3614
LweI GCATC 6 cut(s) 749, 826, 981, 1629, 1651, 3148
MaeI CTAG 4 cut(s) 480, 2681, 3005, 4044
MbiI CCGCTC 2 cut(s) 262, 2958
MfeI CAATTG 2 cut(s) 3645, 3795
MflI RGATCY 8 cut(s) 616, 786, 1818, 1827, 2362, 3442, 3631, 3801
MhlI GDGCHC 5 cut(s) 412, 778, 2589, 3204, 4146
MlsI TGGCCA 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 4 cut(s) 990, 2211, 2368, 3865
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 2 cut(s) 663, 1644
MroI TCCGGA 1 cut(s) 569
MroXI GAANNNNTTC 5 cut(s) 52, 1236, 2882, 3760, 4016
MscI TGGCCA 1 cut(s) 33
MslI CAYNNNNRTG 2 cut(s) 3077, 4277
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 5 cut(s) 81, 386, 1472, 3752, 4223
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 8 cut(s) 570, 613, 833, 978, 1025, 1677, 2685, 2730
MspR9I CCNGG 9 cut(s) 614, 1697, 2419, 2619, 2731, 2761, 2875, 2949, 4093
MunI CAATTG 2 cut(s) 3645, 3795
Mva1269I GAATGC 3 cut(s) 1133, 1394, 2134
MvaI CCWGG 7 cut(s) 1697, 2419, 2619, 2761, 2875, 2949, 4093
MvnI CGCG 3 cut(s) 2223, 2261, 2598
NciI CCSGG 2 cut(s) 614, 2731
NcoI CCATGG 1 cut(s) 1257
NdeI CATATG 1 cut(s) 714
NlaIV GGNNCC 5 cut(s) 558, 1820, 2735, 3602, 3610
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 7 cut(s) 637, 650, 895, 1205, 1309, 2217, 3316
NsiI ATGCAT 2 cut(s) 663, 1644
NspI RCATGY 3 cut(s) 661, 2174, 2542
NspV TTCGAA 2 cut(s) 1251, 2493
PaeI GCATGC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 4145
PagI TCATGA 3 cut(s) 289, 1548, 4173
PceI AGGCCT 3 cut(s) 180, 532, 2617
PciI ACATGT 1 cut(s) 2170
PciSI GCTCTTC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 216
PctI GAATGC 3 cut(s) 1133, 1394, 2134
PdmI GAANNNNTTC 5 cut(s) 52, 1236, 2882, 3760, 4016
PleI GAGTC 4 cut(s) 990, 2210, 2368, 3865
PpsI GAGTC 4 cut(s) 990, 2210, 2368, 3865
Ppu21I YACGTR 1 cut(s) 3208
PpuMI RGGWCCY 2 cut(s) 557, 1223
PscI ACATGT 1 cut(s) 2170
PshBI ATTAAT 2 cut(s) 339, 1941
PsiI TTATAA 1 cut(s) 1764
Psp124BI GAGCTC 2 cut(s) 3204, 4146
Psp1406I AACGTT 1 cut(s) 158
Psp5II RGGWCCY 2 cut(s) 557, 1223
Psp6I CCWGG 7 cut(s) 1695, 2417, 2617, 2759, 2873, 2947, 4091
PspFI CCCAGC 1 cut(s) 1468
PspGI CCWGG 7 cut(s) 1695, 2417, 2617, 2759, 2873, 2947, 4091
PspN4I GGNNCC 5 cut(s) 558, 1820, 2735, 3602, 3610
PspPI GGNCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
PspPPI RGGWCCY 2 cut(s) 557, 1223
PstI CTGCAG 1 cut(s) 3070
PstNI CAGNNNCTG 1 cut(s) 1160
PsuI RGATCY 8 cut(s) 616, 786, 1818, 1827, 2362, 3442, 3631, 3801
PvuII CAGCTG 4 cut(s) 386, 1472, 3752, 4223
RseI CAYNNNNRTG 2 cut(s) 3077, 4277
SacI GAGCTC 2 cut(s) 3204, 4146
SapI GCTCTTC 1 cut(s) 147
Sau96I GGNCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
ScaI AGTACT 1 cut(s) 3248
SchI GAGTC 4 cut(s) 990, 2211, 2368, 3865
ScrFI CCNGG 9 cut(s) 614, 1697, 2419, 2619, 2731, 2761, 2875, 2949, 4093
SduI GDGCHC 5 cut(s) 412, 778, 2589, 3204, 4146
SfaNI GCATC 6 cut(s) 749, 826, 981, 1629, 1651, 3148
SfcI CTRYAG 4 cut(s) 417, 3066, 3736, 3832
Sfr274I CTCGAG 1 cut(s) 4145
SfuI TTCGAA 2 cut(s) 1251, 2493
SinI GGWCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
SlaI CTCGAG 1 cut(s) 4145
SmiMI CAYNNNNRTG 2 cut(s) 3077, 4277
SmlI CTYRAG 3 cut(s) 195, 311, 4145
SmoI CTYRAG 3 cut(s) 195, 311, 4145
SnaBI TACGTA 1 cut(s) 3208
SpeI ACTAGT 1 cut(s) 3004
SphI GCATGC 1 cut(s) 661
SseBI AGGCCT 3 cut(s) 180, 532, 2617
SspI AATATT 2 cut(s) 826, 3027
SspMI CTAG 4 cut(s) 480, 2681, 3005, 4044
SstI GAGCTC 2 cut(s) 3204, 4146
StuI AGGCCT 3 cut(s) 180, 532, 2617
StyD4I CCNGG 9 cut(s) 612, 1695, 2417, 2617, 2729, 2759, 2873, 2947, 4091
StyI CCWWGG 7 cut(s) 763, 945, 1219, 1257, 2043, 3604, 3768
TatI WGTACW 5 cut(s) 2829, 3246, 3384, 3817, 3921
TauI GCSGC 2 cut(s) 3225, 3980
TscAI CASTG 6 cut(s) 552, 870, 1149, 3103, 3112, 4167
TseFI GTSAC 7 cut(s) 637, 650, 895, 1205, 1309, 2217, 3316
Tsp45I GTSAC 7 cut(s) 637, 650, 895, 1205, 1309, 2217, 3316
TspGWI ACGGA 7 cut(s) 120, 454, 2136, 2478, 2521, 4054, 4119
TspRI CASTG 6 cut(s) 552, 870, 1149, 3103, 3112, 4167
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 6 cut(s) 557, 1022, 1223, 3212, 3516, 4095
VspI ATTAAT 2 cut(s) 339, 1941
XapI RAATTY 9 cut(s) 250, 1093, 1244, 1382, 3688, 3881, 3985, 4169, 4202
XceI RCATGY 3 cut(s) 661, 2174, 2542
XcmI CCANNNNNNNNNTGG 2 cut(s) 586, 3028
XhoI CTCGAG 1 cut(s) 4145
XmiI GTMKAC 2 cut(s) 805, 1569
XmnI GAANNNNTTC 5 cut(s) 52, 1236, 2882, 3760, 4016
XspI CTAG 4 cut(s) 480, 2681, 3005, 4044
ZrmI AGTACT 1 cut(s) 3248
Zsp2I ATGCAT 2 cut(s) 663, 1644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.