Rw6G025150
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
48433157 .. 48439572
6416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025150.1

Sequence Viewer

Length: 4161 bp
ATGGACATCATCAGCTGTGACCTTGAAAAAGCCGGTCACAGTTTCAACAGAAGGGGTTCGTTTTGGACTGACGATGGCAGGGCTGTTTTCTCAGCATCTTCAGTTGGAGAGGACGATGAGGAAGCTCTCAAATGGGCAGCTTTGCAGAGACTTCCTACATTCACTCGTTTGAAAAAAGGTCTGCTCACTACTCCTCAAGGCCATGCCAACGAAGTCGATGTGCATCACCTTGAGCTGCAAGAAAAGAAAGACTTGATCGAGAGGCTAGTGGGAGTTGCTGAGGAGGATCATGAGAAATTTTTGTTGAGGCTCAAGAGCCGAATTGATAGAGTTGGAATTAGTGTTCCTACAATTGAAGTTAGGTTCGAGCATTTGAAAATTGCAGCTGAAACTCATGTTGGAGGCAGGGCTCTGCCTTCTGTCTTCAATTATTGTGTTAATGTAGTGGAGGGTTTCTTGAATTGCCTGCACGTTCTTCCTGAAAAGAAGGAACATTTGTCTATACTGAAAGATGTCAGTGGGATCATCAAGCCTTGCAGGATGACATTGCTTTTGGGTCCTCCAAGTTCAGGGAAGACCACGCTCTTGCTGGCTTTGGCCGGAGAGCTTGATAAGGATCTCAAGGTTTCAGGAAGTGTGACTTACAATGGTCATGGCATGCACGAGTTTGTGCCTCAGAGAAGTGCTGCATATATCAGTCAACATGATGTTCATATTGGAGAAATGACAGTTGCAGAAACCTTGGCTTTTTCTGCAAGATGCCAAGGGGTCGGACCTCGTTATGAGATGCTAGCAGAGCTAAGTAGAAGAGAGAAAGATGCAAGTATTAAGCCAGATCCAGACTTGGATATCTACATGAAGGGAATAGCATCAGAAAGTAAGAGAGCAGCATTTGTGACAAATTATATTCTGAAGGTTTTGGGATTGGAGGGCTGTGCAAATACCTTGGTAGGGGATCAATTGATAAGGGGTATATCTGGAGGACAAAAGAAGCGAGTCACAACTGGTGAGATGTTAGTTGGTCCTGCTAAGGCACTATTCATGGACGAAATATCGACTGGTTTGGATAGTTCAACAACTTATCAAATAGTGAATTCCATCAAGCAATATGTTCACATTCTCCAAGGGACTGCATTCATCTCACTACTGCAGCCAGCACCCGAGACTTATGATCTATTTGATGACATTATTCTCCTTTCTGATGGTCAAATTGTGTATCAAGGTCCCCGCGAACATGTTCTCGATTTTTTTGAGTCTATGGGCTTCAGATGTCCAGAGAGAAAAGGTGTGGCCGATTTCCTGCAAGAAGTGACATCAAGGAAAGATCAGGAGCAGTATTGGTTTAGCAGAGATGAACCTTACAGGTTCATCACAGTCGAAGAATTTTCCTTGGCATTCCAATCTTTCCACGTAGGGCGCGCAATTACACATGAACTTGCTACTCCATTTGACAAGACCAAAAGCCACTCAGCTGCATTAACGACAAAAAAATATGGTTTCTTGCTCATGAAGAGGAATTCATTTGTTTACCTTTTCAAGCTTATCCAACTCTCAATATTGTCTCTGATTACAATGACACTGTTCCTACGAACTGAGATGCACCGCGATTCAGTAATTAATGGAGGAATTTATGCTGGCGCATTATTCTTCTCCTTGGTTGCTGTTATGTTCAATGGAATGGCAGAGCTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGATTGTTTAAGCAATACCTTCTCCTCCTACTCATGAATCAAATGGCTTCTGGATTATTCCGATTCATTGCTGGAGTAGGTAGAAGCTTGACTGTTGCTAATACATTTGGCTCATTTGCACTAGTCATGCTTTTCGCTTTGGGGGGCTTTGTCCTGTCAAGAGAAAGTATAAAGAAATGGTGGATATGGGGCTACTGGATATCACCTTTGATGTATGGGCAGAATGCAATTGTAGTTAATGAATTCCTTGGCAAGAGTTGGTCACATGTTCTTCCAAACTCAAACGAATCATTAGGAGTTGAAATTCTGAAATCTCGTGGATTTCGTACACATGCATATTGGTATTGGATTGGCGCAGGAGCATTGGCTGGATACATGCTCTTATTCAACATTTGTTACACTCTGCAAGAATCTCAAGGCAATAAAGATGATGACAAAAGCTTGACTCCTCAAATCAGCAAAGAGAAAGGGGATGGAAGTAGTACGCATAACACGAAAAGAGGAATGGTTCTTCCATTTGAACCATATTCCATCACCTTTGATGAAATCTCATACTCGGTGGACATGCCACAGGAAATGAAGAACCAAGGTGTTCCTGAGGATAAATTGGTGCTCCTCAGGCGCGTGAGTGGTGCTTTCAGGCCAGGTGTTCTCACGGCTCTTATGGGAGTGAGTGGTGCTGGCAAGACAACTCTAATGGATGTACTAGCTGGTAGAAAAACTGGGGGATATATTGAGGGAAATATCACAATTTCTGGGCACCCCAAGAAGCAAGAATCATTTGCTCGAATTTCTGGATACTGTGAGCAGAATGACATCCACTCTCCACATGTTACTGTTTATGAATCCTTGATGTACTCAGCATGGTTGCGTTTACCTGCAGAAATCGATTCCGAAACAAGGAAGATGTTTGTCGAGGAAGTGATGGCACTTGTGGAGTTGGATCCGTTAAGGCAAGCACTTGTAGGGTTGCCCGGTGCAAATGGTCTCTCAACTGAGCAAAGAAAGAGGCTGACCATTGCAGTTGAACTAGTGGCTAACCCCTCCATAATTTTCATGGATGAACCAACTTCTGGCCTAGATGCAAGAGAATACTGTGGACACGGAAGAACAGTTGTGTGCACCATTCATCAGCCAAGCATTGATATCTTTGAATCTTTTGATGAGTTATTCCTACTGAAGAAAGGAGGACAAGAGCTATACGTTGGGCCATTGGGGCGTCATTCTTGCCATTTAATCAAGTACTTTGAGGGAATTGATAATGTCAGTAAGATTAAGGATGGTTATAATCCAGCAACTTGGATGTTGGAAGTCACCAGTTCTGCAAAAGAAATAGCTTCTGGTGTTGATTTTGCTGATATTTATAAAAATTCAGAGCTATACAGGAGAAACAAAACACTTATTGAAGAACTGAGCACCCCTCCTCCAGATTCCAAGGACCTGTATTTCCCTACTCAATATTCTCAGCCATTTTTAACACAATGCATGGCTTGCTTATGGAAACAACATTGGTCATATTGGCGCAATCCAGCATATACTGCCATAAAGTTGATATACACAACCATCATAGCCTTGATGTTGGGGACAATGTTCTGGGACCTTGGCTCCAAAACGAAAAAACAACAGGATCTGTTCAATGCAATTGGTTCTATGTATGCTGCTGTTCTGTTTCTTGGTATTAAGAATTCAACAACAGTTCAGCCAGTAGTGTCTGTCGAACGAACAGTCTTTTATAGAGAACGAGCTGCTGGAATGTATTCTCCATTGGCTTATGCATTTGCACAGGTTGCAATTGAGCTCCCATATATTTTTGCCCAAACAATTCTCTATGGTGTCATAGTCTATGCAATGATCGGTTTTGAGTGGACTGTGACTAAATTCTTATGGTACCTATTTTTCATGTATTTCACATTTCTGTACTTCACCTTCTATGGTATGATGGGAGTGGCCTTTACACCGAACCAGCACGTTGCTGCTATAAGCTCTAGTGCATTTTATGCAGTATGGAATGTCTTCTCCGGGTTCTTAATCCCACGAACTAGGATTCCTATATGGTGGAGATGGTACTATTGGGCATGTCCAATGGCTTGGAGCTTGTATGGATTGGCTACATCACAGTTTGGAGATCTACAGAACGAGCTTGAGACGGGCGAAACTGTGGAACAATTTATGAGGACTTACTTTGGCTTCAAACATGAATTTCTAGGAGTGGTTGCAGCAGTAGTTGCTGGATTTGCAGTACTCTTTGCATTTGTCTTTGCCTTTTCAATTAAGATGTTGAACTTCCAGAGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1386

Amino Acids

156.41

Weight (kDa)

7.05

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 169 - 350 4.1e-15 ABC transporter
ABC2_membrane_7 PF19055 384 - 436 9.3e-06 ABC-2 type transporter
ABC2_membrane PF01061 498 - 703 6.1e-47 ABC-2 type transporter
PDR_assoc PF08370 708 - 756 3.2e-20 Plant PDR ABC transporter associated
ABC_tran PF00005 827 - 979 2.8e-21 ABC transporter
ABC2_membrane PF01061 1114 - 1328 1.5e-58 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1722, 3150, 3228
Acc36I ACCTGC 1 cut(s) 2749
Acc65I GGTACC 1 cut(s) 3750
AccB1I GGYRCC 2 cut(s) 2622, 3750
AccB7I CCANNNNNTGG 2 cut(s) 1859, 2936
AccII CGCG 4 cut(s) 1230, 1419, 1605, 2487
AciI CCGC 2 cut(s) 1228, 1603
AcoI YGGCCR 2 cut(s) 597, 1290
AcuI CTGAAG 4 cut(s) 84, 932, 1249, 3062
AcyI GRCGYC 1 cut(s) 3082
AfaI GTAC 9 cut(s) 2191, 2347, 2568, 2720, 3107, 3752, 3782, 3929, 4104
AfiI CCNNNNNNNGG 5 cut(s) 569, 951, 1859, 2763, 2936
AflIII ACRYGT 3 cut(s) 1234, 2128, 2692
AhlI ACTAGT 2 cut(s) 1984, 2893
AjnI CCWGG 1 cut(s) 2506
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AloI GAACNNNNNNTCC 4 cut(s) 327, 359, 3892, 3924
Alw21I GWGCWC 4 cut(s) 2478, 2987, 3281, 3663
Alw26I GTCTC 5 cut(s) 142, 1157, 1566, 2855, 4001
Alw44I GTGCAC 1 cut(s) 2983
AlwNI CAGNNNCTG 1 cut(s) 3493
Ama87I CYCGRG 1 cut(s) 1160
AoxI GGCC 7 cut(s) 199, 597, 1290, 2504, 2938, 3071, 3810
ApaLI GTGCAC 1 cut(s) 2983
ArsI GACNNNNNNTTYG 4 cut(s) 535, 567, 3573, 3605
AseI ATTAAT 1 cut(s) 1617
Asp700I GAANNNNTTC 4 cut(s) 55, 1236, 3619, 3875
Asp718I GGTACC 1 cut(s) 3750
AspLEI GCGC 6 cut(s) 1419, 1421, 1640, 2219, 2487, 3387
AspS9I GGNCC 7 cut(s) 557, 773, 1022, 1223, 3071, 3301, 3460
AsuC2I CCSGG 2 cut(s) 2838, 3883
AsuHPI GGTGA 8 cut(s) 218, 1019, 1786, 1819, 2058, 2389, 3169, 3778
AsuNHI GCTAGC 1 cut(s) 790
AvaI CYCGRG 1 cut(s) 1160
AvaII GGWCC 6 cut(s) 557, 773, 1022, 1223, 3301, 3460
AxyI CCTNAGG 2 cut(s) 2460, 2480
BaeGI GKGCMC 2 cut(s) 2625, 2987
BamHI GGATCC 1 cut(s) 2806
BanI GGYRCC 2 cut(s) 2622, 3750
BanII GRGCYC 2 cut(s) 412, 3663
BarI GAAGNNNNNNTAC 2 cut(s) 3773, 3805
BauI CACGAG 2 cut(s) 662, 2178
BbsI GAAGAC 3 cut(s) 415, 581, 3868
Bbv12I GWGCWC 4 cut(s) 2478, 2987, 3281, 3663
BbvCI CCTCAGC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 2535
BcgI CGANNNNNNTGC 2 cut(s) 1671, 1705
BciT130I CCWGG 1 cut(s) 2508
BciVI GTATCC 2 cut(s) 2228, 2654
BcnI CCSGG 2 cut(s) 2838, 3883
BcoDI GTCTC 5 cut(s) 142, 1157, 1566, 2855, 4001
BcuI ACTAGT 2 cut(s) 1984, 2893
BfaI CTAG 9 cut(s) 266, 791, 1985, 2570, 2894, 2942, 3849, 3903, 4067
BfmI CTRYAG 4 cut(s) 1148, 1698, 2742, 3992
BfuAI ACCTGC 1 cut(s) 2749
BfuI GTATCC 2 cut(s) 2228, 2654
BglI GCCNNNNNGGC 1 cut(s) 3079
BglII AGATCT 1 cut(s) 3988
BmcAI AGTACT 2 cut(s) 3107, 4104
Bme1390I CCNGG 3 cut(s) 2508, 2838, 3883
Bme18I GGWCC 6 cut(s) 557, 773, 1022, 1223, 3301, 3460
BmeT110I CYCGRG 1 cut(s) 1160
BmgT120I GGNCC 7 cut(s) 557, 773, 1022, 1223, 3071, 3301, 3460
BmiI GGNNCC 8 cut(s) 558, 1225, 1778, 2624, 2808, 3461, 3469, 3752
BmrFI CCNGG 3 cut(s) 2508, 2838, 3883
BmrI ACTGGG 1 cut(s) 2595
BmsI GCATC 8 cut(s) 104, 232, 749, 777, 808, 878, 1587, 2935
BmtI GCTAGC 1 cut(s) 794
BmuI ACTGGG 1 cut(s) 2595
BpiI GAAGAC 3 cut(s) 415, 581, 3868
BplI GAGNNNNNCTC 2 cut(s) 3268, 3300
BpmI CTGGAG 3 cut(s) 999, 1956, 3273
Bpu10I CCTNAGC 2 cut(s) 279, 1029
BpuEI CTTGAG 7 cut(s) 180, 251, 296, 605, 1766, 2262, 4025
BpuMI CCSGG 2 cut(s) 2838, 3883
Bsa29I ATCGAT 1 cut(s) 2751
BsaAI YACGTR 1 cut(s) 1411
BsaBI GATNNNNATC 2 cut(s) 222, 615
BsaHI GRCGYC 1 cut(s) 3082
BsaI GGTCTC 1 cut(s) 2855
BsaXI ACNNNNNCTCC 4 cut(s) 3271, 3301, 3452, 3482
Bsc4I CCNNNNNNNGG 5 cut(s) 569, 951, 1859, 2763, 2936
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 7 cut(s) 1009, 1063, 1712, 2063, 2590, 3180, 3566
Bse21I CCTNAGG 2 cut(s) 2460, 2480
Bse3DI GCAATG 4 cut(s) 545, 1929, 2880, 3717
Bse8I GATNNNNATC 2 cut(s) 222, 615
BseBI CCWGG 1 cut(s) 2508
BseCI ATCGAT 1 cut(s) 2751
BseGI GGATG 7 cut(s) 546, 2341, 2569, 2679, 2929, 3148, 3171
BseJI GATNNNNATC 2 cut(s) 222, 615
BseLI CCNNNNNNNGG 5 cut(s) 569, 951, 1859, 2763, 2936
BseMI GCAATG 4 cut(s) 545, 1929, 2880, 3717
BseNI ACTGG 7 cut(s) 1009, 1063, 1712, 2063, 2590, 3180, 3566
BsePI GCGCGC 1 cut(s) 1417
BseRI GAGGAG 7 cut(s) 183, 296, 1769, 1877, 2301, 2468, 3276
BseSI GKGCMC 2 cut(s) 2625, 2987
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 4 cut(s) 1230, 1419, 1605, 2487
BshFI GGCC 7 cut(s) 201, 599, 1292, 2506, 2940, 3073, 3812
BshNI GGYRCC 2 cut(s) 2622, 3750
BshVI ATCGAT 1 cut(s) 2751
BsiHKAI GWGCWC 4 cut(s) 2478, 2987, 3281, 3663
BsiHKCI CYCGRG 1 cut(s) 1160
BsiSI CCGG 5 cut(s) 33, 600, 1769, 2838, 3882
BslFI GGGAC 4 cut(s) 1141, 1209, 3460, 3473
BslI CCNNNNNNNGG 5 cut(s) 569, 951, 1859, 2763, 2936
BsmAI GTCTC 5 cut(s) 142, 1157, 1566, 2855, 4001
BsmBI CGTCTC 1 cut(s) 4001
BsmFI GGGAC 4 cut(s) 1141, 1209, 3460, 3473
BsmI GAATGC 3 cut(s) 1133, 1394, 2092
BsnI GGCC 7 cut(s) 201, 599, 1292, 2506, 2940, 3073, 3812
Bso31I GGTCTC 1 cut(s) 2855
BsoBI CYCGRG 1 cut(s) 1160
Bsp1286I GDGCHC 6 cut(s) 412, 2478, 2625, 2987, 3281, 3663
Bsp19I CCATGG 1 cut(s) 1751
BspACI CCGC 2 cut(s) 1228, 1603
BspANI GGCC 7 cut(s) 201, 599, 1292, 2506, 2940, 3073, 3812
BspDI ATCGAT 1 cut(s) 2751
BspFNI CGCG 4 cut(s) 1230, 1419, 1605, 2487
BspHI TCATGA 3 cut(s) 289, 1506, 1896
BspLI GGNNCC 8 cut(s) 558, 1225, 1778, 2624, 2808, 3461, 3469, 3752
BspMAI CTGCAG 2 cut(s) 1152, 2746
BspMI ACCTGC 1 cut(s) 2749
BspOI GCTAGC 1 cut(s) 794
BspQI GCTCTTC 1 cut(s) 1745
BspT107I GGYRCC 2 cut(s) 2622, 3750
BspTNI GGTCTC 1 cut(s) 2855
BsrDI GCAATG 4 cut(s) 545, 1929, 2880, 3717
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 7 cut(s) 1009, 1063, 1712, 2063, 2590, 3180, 3566
BssAI RCCGGY 1 cut(s) 32
BssHII GCGCGC 1 cut(s) 1417
BssNI GRCGYC 1 cut(s) 3082
BssSI CACGAG 2 cut(s) 662, 2178
Bst2BI CACGAG 2 cut(s) 662, 2178
Bst2UI CCWGG 1 cut(s) 2508
Bst6I CTCTTC 3 cut(s) 802, 1505, 1745
BstACI GRCGYC 1 cut(s) 3082
BstAPI GCANNNNNTGC 5 cut(s) 3354, 3401, 3650, 3860, 4088
BstBAI YACGTR 1 cut(s) 1411
BstDSI CCRYGG 1 cut(s) 1751
BstF5I GGATG 7 cut(s) 546, 2341, 2569, 2679, 2929, 3148, 3171
BstFNI CGCG 4 cut(s) 1230, 1419, 1605, 2487
BstHHI GCGC 6 cut(s) 1419, 1421, 1640, 2219, 2487, 3387
BstMAI GTCTC 5 cut(s) 142, 1157, 1566, 2855, 4001
BstNI CCWGG 1 cut(s) 2508
BstNSI RCATGY 8 cut(s) 661, 1238, 2132, 2198, 2242, 2431, 2696, 3942
BstSCI CCNGG 3 cut(s) 2506, 2836, 3881
BstSFI CTRYAG 4 cut(s) 1148, 1698, 2742, 3992
BstSLI GKGCMC 2 cut(s) 2625, 2987
BstUI CGCG 4 cut(s) 1230, 1419, 1605, 2487
BstV2I GAAGAC 3 cut(s) 415, 581, 3868
BstX2I RGATCY 6 cut(s) 616, 835, 1785, 2806, 3490, 3988
BstXI CCANNNNNNTGG 2 cut(s) 3162, 3951
BstYI RGATCY 6 cut(s) 616, 835, 1785, 2806, 3490, 3988
Bsu15I ATCGAT 1 cut(s) 2751
Bsu36I CCTNAGG 2 cut(s) 2460, 2480
BsuI GTATCC 2 cut(s) 2228, 2654
BsuRI GGCC 7 cut(s) 201, 599, 1292, 2506, 2940, 3073, 3812
BsuTUI ATCGAT 1 cut(s) 2751
BtgI CCRYGG 1 cut(s) 1751
BtsCI GGATG 7 cut(s) 546, 2341, 2569, 2679, 2929, 3148, 3171
BtsIMutI CAGTG 3 cut(s) 523, 1577, 1719
BveI ACCTGC 1 cut(s) 2749
CaiI CAGNNNCTG 1 cut(s) 3493
CciI TCATGA 3 cut(s) 289, 1506, 1896
CfoI GCGC 6 cut(s) 1419, 1421, 1640, 2219, 2487, 3387
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 7 cut(s) 557, 773, 1022, 1223, 3071, 3301, 3460
ClaI ATCGAT 1 cut(s) 2751
CseI GACGC 1 cut(s) 3071
Csp6I GTAC 9 cut(s) 2190, 2346, 2567, 2719, 3106, 3751, 3781, 3928, 4103
CviQI GTAC 9 cut(s) 2190, 2346, 2567, 2719, 3106, 3751, 3781, 3928, 4103
EaeI YGGCCR 2 cut(s) 597, 1290
Eam1104I CTCTTC 3 cut(s) 802, 1505, 1745
EarI CTCTTC 3 cut(s) 802, 1505, 1745
Ecl136II GAGCTC 1 cut(s) 3661
Eco24I GRGCYC 2 cut(s) 412, 3663
Eco31I GGTCTC 1 cut(s) 2855
Eco32I GATATC 3 cut(s) 850, 2064, 3010
Eco47I GGWCC 6 cut(s) 557, 773, 1022, 1223, 3301, 3460
Eco53kI GAGCTC 1 cut(s) 3661
Eco57I CTGAAG 4 cut(s) 84, 932, 1249, 3062
Eco81I CCTNAGG 2 cut(s) 2460, 2480
Eco88I CYCGRG 1 cut(s) 1160
EcoICRI GAGCTC 1 cut(s) 3661
EcoO109I RGGNCCY 4 cut(s) 557, 1223, 3301, 3460
EcoRI GAATTC 4 cut(s) 1093, 1516, 2105, 3547
EcoRII CCWGG 1 cut(s) 2506
EcoRV GATATC 3 cut(s) 850, 2064, 3010
EcoT22I ATGCAT 3 cut(s) 2200, 3350, 3640
EcoT38I GRGCYC 2 cut(s) 412, 3663
Esp3I CGTCTC 1 cut(s) 4001
FalI AAGNNNNNCTT 6 cut(s) 236, 268, 625, 657, 1724, 1756
FaqI GGGAC 4 cut(s) 1141, 1209, 3460, 3473
FauI CCCGC 1 cut(s) 1235
FauNDI CATATG 1 cut(s) 1759
FokI GGATG 7 cut(s) 553, 2348, 2576, 2666, 2936, 3155, 3178
FriOI GRGCYC 2 cut(s) 412, 3663
FspBI CTAG 9 cut(s) 266, 791, 1985, 2570, 2894, 2942, 3849, 3903, 4067
GlaI GCGC 6 cut(s) 1418, 1420, 1639, 2218, 2486, 3386
GsuI CTGGAG 3 cut(s) 999, 1956, 3273
HaeIII GGCC 7 cut(s) 201, 599, 1292, 2506, 2940, 3073, 3812
HapII CCGG 5 cut(s) 33, 600, 1769, 2838, 3882
HgaI GACGC 1 cut(s) 3071
HhaI GCGC 6 cut(s) 1419, 1421, 1640, 2219, 2487, 3387
Hin1I GRCGYC 1 cut(s) 3082
Hin6I GCGC 6 cut(s) 1417, 1419, 1638, 2217, 2485, 3385
HinP1I GCGC 6 cut(s) 1417, 1419, 1638, 2217, 2485, 3385
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HindIII AAGCTT 4 cut(s) 1538, 1706, 1948, 2302
HpaII CCGG 5 cut(s) 33, 600, 1769, 2838, 3882
HphI GGTGA 8 cut(s) 218, 1019, 1786, 1819, 2058, 2389, 3169, 3778
Hpy166II GTNNAC 9 cut(s) 701, 1114, 1528, 2192, 2425, 2738, 2963, 2985, 3729
Hpy8I GTNNAC 9 cut(s) 701, 1114, 1528, 2192, 2425, 2738, 2963, 2985, 3729
HpyAV CCTTC 7 cut(s) 45, 426, 481, 853, 907, 1892, 3799
HpyCH4IV ACGT 4 cut(s) 471, 1410, 3066, 3831
HpySE526I ACGT 4 cut(s) 471, 1410, 3066, 3831
Hsp92I GRCGYC 1 cut(s) 3082
HspAI GCGC 6 cut(s) 1417, 1419, 1638, 2217, 2485, 3385
KpnI GGTACC 1 cut(s) 3754
LguI GCTCTTC 1 cut(s) 1745
LmnI GCTCC 7 cut(s) 1330, 1782, 2222, 2481, 3473, 3666, 3954
LweI GCATC 8 cut(s) 104, 232, 749, 777, 808, 878, 1587, 2935
MaeI CTAG 9 cut(s) 266, 791, 1985, 2570, 2894, 2942, 3849, 3903, 4067
MaeII ACGT 4 cut(s) 471, 1410, 3066, 3831
MfeI CAATTG 5 cut(s) 351, 959, 2091, 3504, 3654
MflI RGATCY 6 cut(s) 616, 835, 1785, 2806, 3490, 3988
MhlI GDGCHC 6 cut(s) 412, 2478, 2625, 2987, 3281, 3663
MlyI GAGTC 3 cut(s) 1005, 1262, 2302
MmeI TCCRAC 8 cut(s) 85, 313, 379, 751, 1570, 1840, 2784, 3150
Mph1103I ATGCAT 3 cut(s) 2200, 3350, 3640
MroXI GAANNNNTTC 4 cut(s) 55, 1236, 3619, 3875
MspA1I CMGCKG 3 cut(s) 15, 386, 1472
MspI CCGG 5 cut(s) 33, 600, 1769, 2838, 3882
MspR9I CCNGG 3 cut(s) 2508, 2838, 3883
MunI CAATTG 5 cut(s) 351, 959, 2091, 3504, 3654
Mva1269I GAATGC 3 cut(s) 1133, 1394, 2092
MvaI CCWGG 1 cut(s) 2508
MvnI CGCG 4 cut(s) 1230, 1419, 1605, 2487
NciI CCSGG 2 cut(s) 2838, 3883
NcoI CCATGG 1 cut(s) 1751
NdeI CATATG 1 cut(s) 1759
NheI GCTAGC 1 cut(s) 790
NlaIV GGNNCC 8 cut(s) 558, 1225, 1778, 2624, 2808, 3461, 3469, 3752
NmuCI GTSAC 9 cut(s) 17, 35, 637, 895, 997, 1309, 2124, 3175, 3733
NsiI ATGCAT 3 cut(s) 2200, 3350, 3640
NspI RCATGY 8 cut(s) 661, 1238, 2132, 2198, 2242, 2431, 2696, 3942
PaeI GCATGC 1 cut(s) 661
PagI TCATGA 3 cut(s) 289, 1506, 1896
PauI GCGCGC 1 cut(s) 1417
PciI ACATGT 3 cut(s) 1234, 2128, 2692
PciSI GCTCTTC 1 cut(s) 1745
PcsI WCGNNNNNNNCGW 2 cut(s) 2185, 2354
PctI GAATGC 3 cut(s) 1133, 1394, 2092
PdmI GAANNNNTTC 4 cut(s) 55, 1236, 3619, 3875
PflMI CCANNNNNTGG 2 cut(s) 1859, 2936
PleI GAGTC 3 cut(s) 1004, 1261, 2302
PpsI GAGTC 3 cut(s) 1004, 1261, 2302
Ppu21I YACGTR 1 cut(s) 1411
PpuMI RGGWCCY 4 cut(s) 557, 1223, 3301, 3460
PscI ACATGT 3 cut(s) 1234, 2128, 2692
PshBI ATTAAT 1 cut(s) 1617
PsiI TTATAA 3 cut(s) 1722, 3150, 3228
Psp124BI GAGCTC 1 cut(s) 3663
Psp5II RGGWCCY 4 cut(s) 557, 1223, 3301, 3460
Psp6I CCWGG 1 cut(s) 2506
PspGI CCWGG 1 cut(s) 2506
PspN4I GGNNCC 8 cut(s) 558, 1225, 1778, 2624, 2808, 3461, 3469, 3752
PspPI GGNCC 7 cut(s) 557, 773, 1022, 1223, 3071, 3301, 3460
PspPPI RGGWCCY 4 cut(s) 557, 1223, 3301, 3460
PstI CTGCAG 2 cut(s) 1152, 2746
PstNI CAGNNNCTG 1 cut(s) 3493
PsuI RGATCY 6 cut(s) 616, 835, 1785, 2806, 3490, 3988
PteI GCGCGC 1 cut(s) 1417
PvuII CAGCTG 3 cut(s) 15, 386, 1472
RsaI GTAC 9 cut(s) 2191, 2347, 2568, 2720, 3107, 3752, 3782, 3929, 4104
RsaNI GTAC 9 cut(s) 2190, 2346, 2567, 2719, 3106, 3751, 3781, 3928, 4103
SacI GAGCTC 1 cut(s) 3663
SapI GCTCTTC 1 cut(s) 1745
Sau96I GGNCC 7 cut(s) 557, 773, 1022, 1223, 3071, 3301, 3460
ScaI AGTACT 2 cut(s) 3107, 4104
SchI GAGTC 3 cut(s) 1005, 1262, 2302
ScrFI CCNGG 3 cut(s) 2508, 2838, 3883
SduI GDGCHC 6 cut(s) 412, 2478, 2625, 2987, 3281, 3663
SfaNI GCATC 8 cut(s) 104, 232, 749, 777, 808, 878, 1587, 2935
SfcI CTRYAG 4 cut(s) 1148, 1698, 2742, 3992
SinI GGWCC 6 cut(s) 557, 773, 1022, 1223, 3301, 3460
SmlI CTYRAG 7 cut(s) 195, 230, 311, 620, 1781, 2277, 4004
SmoI CTYRAG 7 cut(s) 195, 230, 311, 620, 1781, 2277, 4004
SpeI ACTAGT 2 cut(s) 1984, 2893
SphI GCATGC 1 cut(s) 661
SsiI CCGC 2 cut(s) 1228, 1603
SspI AATATT 2 cut(s) 1557, 3323
SspMI CTAG 9 cut(s) 266, 791, 1985, 2570, 2894, 2942, 3849, 3903, 4067
SstI GAGCTC 1 cut(s) 3663
StyD4I CCNGG 3 cut(s) 2506, 2836, 3881
TaiI ACGT 4 cut(s) 474, 1413, 3069, 3834
TatI WGTACW 5 cut(s) 2566, 2718, 3105, 3780, 4102
TscAI CASTG 3 cut(s) 523, 1584, 1719
TseFI GTSAC 9 cut(s) 17, 35, 637, 895, 997, 1309, 2124, 3175, 3733
Tsp45I GTSAC 9 cut(s) 17, 35, 637, 895, 997, 1309, 2124, 3175, 3733
TspGWI ACGGA 2 cut(s) 2799, 2982
TspRI CASTG 3 cut(s) 523, 1584, 1719
Van91I CCANNNNNTGG 2 cut(s) 1859, 2936
VneI GTGCAC 1 cut(s) 2983
VpaK11BI GGWCC 6 cut(s) 557, 773, 1022, 1223, 3301, 3460
VspI ATTAAT 1 cut(s) 1617
XceI RCATGY 8 cut(s) 661, 1238, 2132, 2198, 2242, 2431, 2696, 3942
XcmI CCANNNNNNNNNTGG 2 cut(s) 586, 2917
XmnI GAANNNNTTC 4 cut(s) 55, 1236, 3619, 3875
XspI CTAG 9 cut(s) 266, 791, 1985, 2570, 2894, 2942, 3849, 3903, 4067
ZrmI AGTACT 2 cut(s) 3107, 4104
Zsp2I ATGCAT 3 cut(s) 2200, 3350, 3640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.