Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

31386323 .. 31388763

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1214900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAACGAGATAAATACAACCGAGGAAGCAATTCCAACTAGGTACTACTGCTACAGGTGTCGTCATCTGGTCACTGTGGATGTCGAAGTCGAAATCAAATGCCCTTTCTGCCAAGACGGCTTCATCCAACCATGCGAGGGTGTTAACTCACGCTACCTAACCATGTCATCCGAATCTGAGCTTTCTGAAAGTGGTTCAGATGGAGAGGTGCGCACCATTTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

76

Amino Acids

8.56

Weight (kDa)

4.44

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	13 - 42	5.6e-08	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	212
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	52
BglI	GCCNNNNNGGC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	3 cut(s)	85, 123, 167
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	85, 123, 167
BstHHI	GCGC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 117
BstSFI	CTRYAG	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	85, 123, 167
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	132, 163
CviJI	RGCY	2 cut(s)	120, 181
CviKI_1	RGCY	2 cut(s)	120, 181
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	177
FaeI	CATG	2 cut(s)	135, 166
FaiI	YATR	2 cut(s)	133, 164
FatI	CATG	2 cut(s)	131, 162
FokI	GGATG	3 cut(s)	92, 110, 154
FspAI	RTGCGCAY	1 cut(s)	212
FspBI	CTAG	1 cut(s)	39
FspI	TGCGCA	1 cut(s)	212
GlaI	GCGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	135, 166
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	173
HpaI	GTTAAC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	4 cut(s)	172, 178, 187, 199
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 117
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	135, 166
HspAI	GCGC	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	145
LpnPI	CCDG	2 cut(s)	40, 53
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	70
MluCI	AATT	2 cut(s)	30, 222
MmeI	TCCRAC	2 cut(s)	59, 151
MnlI	CCTC	3 cut(s)	16, 130, 199
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	144, 221, 226
MwoI	GCNNNNNNNGC	2 cut(s)	108, 117
NlaIII	CATG	2 cut(s)	135, 166
NmuCI	GTSAC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	144, 221, 226
SetI	ASST	5 cut(s)	44, 59, 159, 183, 210
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	30, 222
SspMI	CTAG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	84, 90
TasI	AATT	2 cut(s)	30, 222
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	144, 221, 226
Tru9I	TTAA	3 cut(s)	144, 221, 226
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	17, 112
TspRI	CASTG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.