Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

31794698 .. 31794975

Gene Structure 278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1218100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 123 bp

ATGAAAACGGAGACGATGGAAGGCTATCTGAAAGACAGCAATGTTGGTGTCGATCTCGTCGTTGGAGGAGTAGTGACGCCCACTGACACTGCCAATCACGAGCTTGCTGCTCAGGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

41

Amino Acids

4.18

Weight (kDa)

4.29

Isoelectric Point (pI)

4.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	77
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcoDI	GTCTC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bse3DI	GCAATG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	46
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	81, 87
Cac8I	GCNNGC	1 cut(s)	105
CseI	GACGC	1 cut(s)	85
CviJI	RGCY	2 cut(s)	24, 103
CviKI_1	RGCY	2 cut(s)	24, 103
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspEI	CC	9 cut(s)	2, 6, 30, 48, 51, 93, 94, 98, 106
GluI	GCNGC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MluCI	AATT	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	109
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	52
SetI	ASST	1 cut(s)	105
SgeI	CNNG	4 cut(s)	68, 110, 112, 116
Sse9I	AATT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	117
TscAI	CASTG	2 cut(s)	88, 94
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	88, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.