Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

17095307 .. 17096507

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTCTTATTATTTTGGTCAAACAAGTTTGACTTTCAAGTAAAGTACAACGCTCCCAACAGAGTCAGTGAAGTAGAGCTGCGAGTGGCCGGACAGTCTCACACTCTCACCGTCTATGCTTCCCTCACTGGAGTCGCCCGCATCCTATCCCAACCCGACAAGAGTCTAATGGGGTCTAGATGGAAAGGGAAGGGCTCAAACAGTATTGCAGCTTCAGGCTCATCTAAGGCGATCGGGTTCTTAAGGATTGCTATGTCACTACGTGTTGTGAAGTCATTGCTAGTTCTTGATATCAGCAAGTTGGTCATATTGCAGACTCTCCATCATGTATGGAGATATATACTGTTGAAGAGTCATTGCTCACAAGGTGGAATCCGGAATAATCCTGTGAAGATCACACCAATAATCAAAACTGAAAATGGAGCCAAGTCAGAGATGTTATATTTCCTCTCTTTAAACTTTGCTGCTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.53

Weight (kDa)

10.36

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	375
AciI	CCGC	1 cut(s)	139
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	198
AdeI	CACNNNGTG	2 cut(s)	263, 368
AfaI	GTAC	1 cut(s)	47
AflII	CTTAAG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	38, 349
AluBI	AGCT	2 cut(s)	79, 212
AluI	AGCT	2 cut(s)	79, 212
Alw26I	GTCTC	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	375
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	79, 209, 464
AsuHPI	GGTGA	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
BbvI	GCAGC	3 cut(s)	66, 221, 451
BccI	CCATC	2 cut(s)	174, 330
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	177, 281
BfrI	CTTAAG	1 cut(s)	241
BisI	GCNGC	3 cut(s)	80, 210, 465
BlsI	GCNGC	3 cut(s)	81, 211, 466
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	2 cut(s)	275, 355
BseAI	TCCGGA	1 cut(s)	375
BseGI	GGATG	1 cut(s)	141
BseMI	GCAATG	2 cut(s)	275, 355
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	66, 221, 451
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	90, 376
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	231, 393
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	275, 355
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	231, 393
Bst4CI	ACNGT	4 cut(s)	96, 112, 203, 345
Bst6I	CTCTTC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	234, 396
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	231, 393
BstMCI	CGRYCG	1 cut(s)	234
BstPAI	GACNNNNGTC	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	66, 221, 451
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	73, 126
Cac8I	GCNNGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	6 cut(s)	79, 89, 195, 212, 219, 425
CviKI_1	RGCY	6 cut(s)	79, 89, 195, 212, 219, 425
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	233, 395
DpnII	GATC	2 cut(s)	231, 393
DraI	TTTAAA	1 cut(s)	456
DraIII	CACNNNGTG	2 cut(s)	263, 368
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	1 cut(s)	329
FaiI	YATR	8 cut(s)	117, 254, 308, 327, 331, 339, 341, 442
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	1 cut(s)	325
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	80, 210, 465
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	80, 210, 465
FspBI	CTAG	2 cut(s)	177, 281
GluI	GCNGC	3 cut(s)	80, 210, 465
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	90, 376
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	6 cut(s)	63, 132, 163, 316, 352, 372
HpaII	CCGG	2 cut(s)	90, 376
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	3 cut(s)	177, 287, 376
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	4 cut(s)	96, 112, 203, 345
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	209, 313
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	231, 393
LmnI	GCTCC	2 cut(s)	58, 422
LpnPI	CCDG	5 cut(s)	103, 114, 201, 389, 399
Lsp1109I	GCAGC	3 cut(s)	66, 221, 451
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	177, 281
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	2 cut(s)	233, 395
MboI	GATC	2 cut(s)	231, 393
MboII	GAAGA	2 cut(s)	361, 403
MhlI	GDGCHC	1 cut(s)	197
MlyI	GAGTC	5 cut(s)	72, 141, 172, 310, 361
MnlI	CCTC	2 cut(s)	134, 458
MroI	TCCGGA	1 cut(s)	375
MseI	TTAA	2 cut(s)	242, 455
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	2 cut(s)	90, 376
NdeII	GATC	2 cut(s)	231, 393
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	81, 211, 466
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	5 cut(s)	71, 140, 171, 310, 360
PpsI	GAGTC	5 cut(s)	71, 140, 171, 310, 360
Ppu21I	YACGTR	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	424
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	242, 455
SatI	GCNGC	3 cut(s)	80, 210, 465
Sau3AI	GATC	2 cut(s)	231, 393
SchI	GAGTC	5 cut(s)	72, 141, 172, 310, 361
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	4 cut(s)	81, 214, 265, 370
SfaNI	GCATC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	177, 281
TaaI	ACNGT	4 cut(s)	96, 112, 203, 345
TaiI	ACGT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	2 cut(s)	242, 455
Tru9I	TTAA	2 cut(s)	242, 455
TscAI	CASTG	2 cut(s)	73, 133
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	3 cut(s)	79, 209, 464
Tsp45I	GTSAC	1 cut(s)	255
TspRI	CASTG	2 cut(s)	73, 133
Vha464I	CTTAAG	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	176
XspI	CTAG	2 cut(s)	177, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.