Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

58414274 .. 58416843

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGGAAATTATGTTCCTTGGTCAAGAACCAGAACAGAAGCTTTCGCTTCACTCCAAGTTCTCTACGCGTTACGAACAACAGGCAGCAGCTATTTCCAGTACCAACCAGGACAAGGAAAAGACAGAGAGAACAGAGGAAGCGAATAATCTTGGCAGCAGGTATTACTGTCACCAGTGTGATCAACTCGTCACTGTCCCTGTGGATGTCACTATGACATGCCCTCTTTGCCAAGGCTGCTTTATGGAAGAATGTAGTGGTGCCATGCAGTCGGAGTCAGAGCCTTCTGCAAGGGACTCTGATGGGCATGGTGCCATGGTAATCCCTTCTTCCAATCAAACAGTCCTGGACATTGTCGAGAACAACAATGGTTCAGCGCCAAATAGATCCCCTTTTCATAGCCTCGGTTCCCATGATTACGACAACTATGGCGAGACACACCAGGCAGCAGGGCACGGTGGTTCCAACCATAGTCAGATACTTGTACTTGTCATTGGCTCTGATCATGCTGTGACCAGCAATAGCGTTAGCGTGCCAGGCCATGTGGTCCCTTATGTTTCAAGTTCCAATAGTGGGTCGCTTCCACTTAACCTTGTTGCGAATGTTGGCCCTGACCAGCCACATCATGGGACAAGGATTACTTCATCCGTCTGCATCTTTTCAGCAACTGGTTTCGGCTTTGAGGCTGTTTCAGCATTTTTTGATCAGGTTTCCACCCCTTGGAAGACTCGTTATGCATTATATGGCATGCTTTTGTCTATTGTGGCTGTACTTGTCTGCATCTTGGACCTCATTCTCAATGCCATGAAACAAAGAAGAATCACGTCTAAGAGTAACAGACTTTGGGGTATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTATTCAGTGCATTAGCTCGGCACTGCAGTATTCATTTCTCTGCAGGCATGCTGCTAATCCTTTGAAAGTATCCCTCGTGCCTTTCTTATTTTTCTTCGTCCTGTTTGCTTTCAAATATAGGAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

37.04

Weight (kDa)

5.98

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AccB1I	GGYRCC	2 cut(s)	260, 311
AccB7I	CCANNNNNTGG	2 cut(s)	626, 720
AccII	CGCG	1 cut(s)	70
AclWI	GGATC	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	3 cut(s)	103, 486, 771
AfiI	CCNNNNNNNGG	4 cut(s)	115, 573, 626, 720
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	561, 949, 997
AjiI	CACGTC	1 cut(s)	825
AjnI	CCWGG	4 cut(s)	108, 345, 441, 535
AleI	CACNNNNGTG	1 cut(s)	177
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	4 cut(s)	43, 92, 875, 900
AluI	AGCT	4 cut(s)	43, 92, 875, 900
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	381
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	2 cut(s)	538, 607
ApeKI	GCWGC	6 cut(s)	86, 89, 156, 237, 446, 935
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	547, 608, 787
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	547, 787
BaeGI	GKGCMC	1 cut(s)	456
BanI	GGYRCC	2 cut(s)	260, 311
BauI	CACGAG	1 cut(s)	959
BbsI	GAAGAC	1 cut(s)	731
BbvI	GCAGC	6 cut(s)	98, 101, 168, 224, 458, 922
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	4 cut(s)	110, 347, 443, 537
BciVI	GTATCC	1 cut(s)	964
BclI	TGATCA	3 cut(s)	181, 502, 703
BcoDI	GTCTC	1 cut(s)	428
BfmI	CTRYAG	2 cut(s)	908, 925
BfoI	RGCGCY	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	964
BisI	GCNGC	6 cut(s)	87, 90, 157, 238, 447, 936
BlsI	GCNGC	6 cut(s)	88, 91, 158, 239, 448, 937
Bme1390I	CCNGG	4 cut(s)	110, 347, 443, 537
Bme18I	GGWCC	2 cut(s)	547, 787
BmgBI	CACGTC	1 cut(s)	825
BmgT120I	GGNCC	3 cut(s)	547, 608, 787
BmiI	GGNNCC	5 cut(s)	262, 313, 409, 463, 549
BmrFI	CCNGG	4 cut(s)	110, 347, 443, 537
BmsI	GCATC	2 cut(s)	663, 789
BpiI	GAAGAC	1 cut(s)	731
BsaJI	CCNNGG	5 cut(s)	19, 232, 315, 403, 719
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 573, 626, 720
Bse1I	ACTGG	3 cut(s)	99, 175, 673
BseBI	CCWGG	4 cut(s)	110, 347, 443, 537
BseDI	CCNNGG	5 cut(s)	19, 232, 315, 403, 719
BseGI	GGATG	2 cut(s)	211, 644
BseLI	CCNNNNNNNGG	4 cut(s)	115, 573, 626, 720
BseNI	ACTGG	3 cut(s)	99, 175, 673
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	6 cut(s)	98, 101, 168, 224, 458, 922
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	540, 609
BshNI	GGYRCC	2 cut(s)	260, 311
BslFI	GGGAC	4 cut(s)	182, 308, 533, 643
BslI	CCNNNNNNNGG	4 cut(s)	115, 573, 626, 720
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	4 cut(s)	182, 308, 533, 643
BsnI	GGCC	2 cut(s)	540, 609
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	181, 386, 502, 703
Bsp19I	CCATGG	1 cut(s)	315
BspANI	GGCC	2 cut(s)	540, 609
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	5 cut(s)	262, 313, 409, 463, 549
BspMAI	CTGCAG	2 cut(s)	912, 929
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	381
BspT107I	GGYRCC	2 cut(s)	260, 311
BsrI	ACTGG	3 cut(s)	99, 175, 673
BssECI	CCNNGG	5 cut(s)	19, 232, 315, 403, 719
BssMI	GATC	4 cut(s)	181, 386, 502, 703
BssSI	CACGAG	1 cut(s)	959
BssT1I	CCWWGG	4 cut(s)	19, 232, 315, 719
Bst2BI	CACGAG	1 cut(s)	959
Bst2UI	CCWGG	4 cut(s)	110, 347, 443, 537
Bst4CI	ACNGT	4 cut(s)	170, 196, 343, 458
BstC8I	GCNNGC	4 cut(s)	533, 749, 929, 933
BstDEI	CTNAG	1 cut(s)	828
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	211, 644
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	4 cut(s)	184, 389, 505, 706
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	4 cut(s)	181, 386, 502, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 237, 537, 692
BstNI	CCWGG	4 cut(s)	110, 347, 443, 537
BstNSI	RCATGY	3 cut(s)	222, 751, 935
BstSCI	CCNGG	4 cut(s)	108, 345, 441, 535
BstSFI	CTRYAG	2 cut(s)	908, 925
BstSLI	GKGCMC	1 cut(s)	456
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	6 cut(s)	98, 101, 168, 224, 458, 922
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	964
BsuRI	GGCC	2 cut(s)	540, 609
BtgI	CCRYGG	1 cut(s)	315
BtrI	CACGTC	1 cut(s)	825
BtsCI	GGATG	2 cut(s)	211, 644
BtsI	GCAGTG	1 cut(s)	905
BtsIMutI	CAGTG	4 cut(s)	182, 192, 896, 905
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	4 cut(s)	533, 749, 929, 933
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	3 cut(s)	547, 608, 787
Csp6I	GTAC	3 cut(s)	102, 485, 770
CviQI	GTAC	3 cut(s)	102, 485, 770
DdeI	CTNAG	1 cut(s)	828
DpnI	GATC	4 cut(s)	183, 388, 504, 705
DpnII	GATC	4 cut(s)	181, 386, 502, 703
Eco130I	CCWWGG	4 cut(s)	19, 232, 315, 719
Eco47I	GGWCC	2 cut(s)	547, 787
Eco57I	CTGAAG	1 cut(s)	879
EcoRII	CCWGG	4 cut(s)	108, 345, 441, 535
EcoT14I	CCWWGG	4 cut(s)	19, 232, 315, 719
EcoT22I	ATGCAT	1 cut(s)	739
ErhI	CCWWGG	4 cut(s)	19, 232, 315, 719
FalI	AAGNNNNNCTT	2 cut(s)	625, 657
FaqI	GGGAC	4 cut(s)	182, 308, 533, 643
FbaI	TGATCA	3 cut(s)	181, 502, 703
Fnu4HI	GCNGC	6 cut(s)	87, 90, 157, 238, 447, 936
FokI	GGATG	2 cut(s)	218, 631
Fsp4HI	GCNGC	6 cut(s)	87, 90, 157, 238, 447, 936
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	6 cut(s)	87, 90, 157, 238, 447, 936
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	540, 609
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	4 cut(s)	275, 296, 727, 819
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	5 cut(s)	274, 280, 301, 477, 502
Hpy188III	TCNNGA	2 cut(s)	26, 358
HpyAV	CCTTC	3 cut(s)	294, 336, 1005
HpyCH4III	ACNGT	4 cut(s)	170, 196, 343, 458
HpyCH4IV	ACGT	1 cut(s)	824
HpyCH4V	TGCA	8 cut(s)	268, 290, 654, 737, 780, 894, 910, 927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 237, 537, 692
HpyF3I	CTNAG	1 cut(s)	828
HpySE526I	ACGT	1 cut(s)	824
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	3 cut(s)	181, 502, 703
Kzo9I	GATC	4 cut(s)	181, 386, 502, 703
Lsp1109I	GCAGC	6 cut(s)	98, 101, 168, 224, 458, 922
LweI	GCATC	2 cut(s)	663, 789
MaeII	ACGT	1 cut(s)	824
MaeIII	GTNAC	6 cut(s)	71, 170, 190, 208, 511, 833
MalI	GATC	4 cut(s)	183, 388, 504, 705
MboI	GATC	4 cut(s)	181, 386, 502, 703
MboII	GAAGA	5 cut(s)	260, 321, 736, 828, 970
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	2 cut(s)	9, 1015
MluI	ACGCGT	1 cut(s)	68
MlyI	GAGTC	3 cut(s)	284, 290, 721
MmeI	TCCRAC	2 cut(s)	252, 489
MnlI	CCTC	6 cut(s)	130, 234, 413, 676, 800, 968
Mph1103I	ATGCAT	1 cut(s)	739
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	177
MspR9I	CCNGG	4 cut(s)	110, 347, 443, 537
MvaI	CCWGG	4 cut(s)	110, 347, 443, 537
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	228, 237, 537, 692
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	4 cut(s)	181, 386, 502, 703
NlaIV	GGNNCC	5 cut(s)	262, 313, 409, 463, 549
NmeAIII	GCCGAG	1 cut(s)	881
NmuCI	GTSAC	4 cut(s)	170, 190, 208, 511
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	3 cut(s)	222, 751, 935
OliI	CACNNNNGTG	1 cut(s)	177
PaeI	GCATGC	2 cut(s)	751, 935
PfeI	GAWTC	1 cut(s)	819
PflFI	GACNNNGTC	1 cut(s)	353
PflMI	CCANNNNNTGG	2 cut(s)	626, 720
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	6 cut(s)	88, 91, 158, 239, 448, 937
PleI	GAGTC	3 cut(s)	283, 290, 721
PpsI	GAGTC	3 cut(s)	283, 290, 721
Psp6I	CCWGG	4 cut(s)	108, 345, 441, 535
PspGI	CCWGG	4 cut(s)	108, 345, 441, 535
PspN4I	GGNNCC	5 cut(s)	262, 313, 409, 463, 549
PspPI	GGNCC	3 cut(s)	547, 608, 787
PstI	CTGCAG	2 cut(s)	912, 929
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	3 cut(s)	103, 486, 771
RsaNI	GTAC	3 cut(s)	102, 485, 770
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	6 cut(s)	87, 90, 157, 238, 447, 936
Sau3AI	GATC	4 cut(s)	181, 386, 502, 703
Sau96I	GGNCC	3 cut(s)	547, 608, 787
SchI	GAGTC	3 cut(s)	284, 290, 721
ScrFI	CCNGG	4 cut(s)	110, 347, 443, 537
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	663, 789
SfcI	CTRYAG	2 cut(s)	908, 925
SinI	GGWCC	2 cut(s)	547, 787
SmiMI	CAYNNNNRTG	1 cut(s)	177
SphI	GCATGC	2 cut(s)	751, 935
Sse9I	AATT	2 cut(s)	9, 1015
StyD4I	CCNGG	4 cut(s)	108, 345, 441, 535
StyI	CCWWGG	4 cut(s)	19, 232, 315, 719
TaaI	ACNGT	4 cut(s)	170, 196, 343, 458
TaiI	ACGT	1 cut(s)	827
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	9, 1015
TatI	WGTACW	2 cut(s)	484, 769
TfiI	GAWTC	1 cut(s)	819
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	4 cut(s)	182, 199, 896, 912
TseFI	GTSAC	4 cut(s)	170, 190, 208, 511
TseI	GCWGC	6 cut(s)	86, 89, 156, 237, 446, 935
Tsp45I	GTSAC	4 cut(s)	170, 190, 208, 511
TspDTI	ATGAA	4 cut(s)	386, 633, 821, 906
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	4 cut(s)	182, 199, 896, 912
Tth111I	GACNNNGTC	1 cut(s)	353
Van91I	CCANNNNNTGG	2 cut(s)	626, 720
VpaK11BI	GGWCC	2 cut(s)	547, 787
XceI	RCATGY	3 cut(s)	222, 751, 935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.