Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

34140613 .. 34142012

Gene Structure 1400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGAGCGTTTTGGGTGAAAGACTGATTGGAGAGCATCCCATGGCAACCCAGGAATTGGTCCACCTTGCGATCTGGATCTCACGTGCTGCATTCCAATTTAGGAATGGAATAGATGGTTTAGATCTAGACAGTCAGGACAAGGAACAGACAGAGAGAACAGAGGAAGCGAATAATGTTGGCAGCAGGCATAACTTTCACCAGTGTGAGCAAGTGGTCAGTGCCACAGCGGATGTTAATATGGCACGCCCTCTTTGCCAAGGTGTCAGCCCATTGCACCTTGCCAGGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATGTGAATGGCGCCATGGTAATCCCTCCTTCCAATCAAACAGTCCCGGTCAACAACAATGGTTCAGCGCCAGACGGATCGCCTTATCATAACCATGGTTCCCATGATTACGACAACTATGGCAGCACACACCAGGCACTGGCAAATGATGATTCCAACCCTAGTCGGTCATTTTTACATAGAGCTGGCTCTGATCATGTTGTCACCATCAATAGCTCGCGAGGCCCTGCAGTAAGGGTCCATAATGTTTCAAGTTCCAATACTGGGTTGCTTCCACTTAGCCGTAGTGCACAGGGCCAGCCACATCATGGGACAGGGGTAGTCATCAAAACTCAATACTATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

23.8

Weight (kDa)

5.8

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccB7I	CCANNNNNTGG	3 cut(s)	58, 457, 626
AccII	CGCG	1 cut(s)	538
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	86, 403
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	4 cut(s)	58, 457, 582, 626
AgsI	TTSAA	1 cut(s)	570
AjnI	CCWGG	3 cut(s)	51, 284, 450
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	2 cut(s)	204, 320
AluBI	AGCT	2 cut(s)	503, 534
AluI	AGCT	2 cut(s)	503, 534
Alw21I	GWGCWC	1 cut(s)	610
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	86, 403
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	2 cut(s)	541, 613
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	3 cut(s)	89, 183, 441
AspLEI	GCGC	2 cut(s)	332, 388
AspS9I	GGNCC	4 cut(s)	61, 542, 556, 613
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	29, 191, 514
AvaII	GGWCC	2 cut(s)	61, 556
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	329
BbrPI	CACGTG	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	3 cut(s)	76, 195, 453
BccI	CCATC	2 cut(s)	110, 533
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	3 cut(s)	53, 286, 452
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	365
BfaI	CTAG	2 cut(s)	128, 480
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	2 cut(s)	333, 389
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	3 cut(s)	90, 184, 442
BlsI	GCNGC	3 cut(s)	91, 185, 443
Bme1390I	CCNGG	4 cut(s)	53, 286, 365, 452
Bme18I	GGWCC	2 cut(s)	61, 556
BmgT120I	GGNCC	4 cut(s)	61, 542, 556, 613
BmiI	GGNNCC	3 cut(s)	331, 418, 557
BmrFI	CCNGG	4 cut(s)	53, 286, 365, 452
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	5 cut(s)	42, 51, 259, 333, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 457, 582, 626
Bse1I	ACTGG	3 cut(s)	202, 462, 586
Bse3DI	GCAATG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	3 cut(s)	53, 286, 452
BseDI	CCNNGG	5 cut(s)	42, 51, 259, 333, 412
BseGI	GGATG	2 cut(s)	37, 238
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	4 cut(s)	58, 457, 582, 626
BseMI	GCAATG	1 cut(s)	272
BseNI	ACTGG	3 cut(s)	202, 462, 586
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	76, 195, 453
Bsh1236I	CGCG	1 cut(s)	538
BshFI	GGCC	2 cut(s)	543, 615
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	347, 643
BslI	CCNNNNNNNGG	4 cut(s)	58, 457, 582, 626
BsmFI	GGGAC	2 cut(s)	347, 643
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	543, 615
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	5 cut(s)	72, 78, 124, 395, 511
Bsp19I	CCATGG	3 cut(s)	42, 333, 412
Bsp68I	TCGCGA	1 cut(s)	538
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	543, 615
BspFNI	CGCG	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	331, 418, 557
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	2 cut(s)	86, 403
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	202, 462, 586
BssECI	CCNNGG	5 cut(s)	42, 51, 259, 333, 412
BssMI	GATC	5 cut(s)	72, 78, 124, 395, 511
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	4 cut(s)	42, 259, 333, 412
Bst2UI	CCWGG	3 cut(s)	53, 286, 452
Bst4CI	ACNGT	2 cut(s)	134, 361
BstACI	GRCGYC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	5 cut(s)	188, 247, 505, 536, 617
BstDEI	CTNAG	1 cut(s)	596
BstDSI	CCRYGG	3 cut(s)	42, 333, 412
BstF5I	GGATG	2 cut(s)	37, 238
BstFNI	CGCG	1 cut(s)	538
BstH2I	RGCGCY	2 cut(s)	333, 389
BstHHI	GCGC	2 cut(s)	332, 388
BstKTI	GATC	5 cut(s)	75, 81, 127, 398, 514
BstMBI	GATC	5 cut(s)	72, 78, 124, 395, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 540
BstNI	CCWGG	3 cut(s)	53, 286, 452
BstSCI	CCNGG	4 cut(s)	51, 284, 363, 450
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	3 cut(s)	76, 195, 453
BstX2I	RGATCY	2 cut(s)	78, 124
BstYI	RGATCY	2 cut(s)	78, 124
BsuRI	GGCC	2 cut(s)	543, 615
BtgI	CCRYGG	3 cut(s)	42, 333, 412
BtsCI	GGATG	2 cut(s)	37, 238
BtsIMutI	CAGTG	4 cut(s)	209, 226, 315, 455
BtuMI	TCGCGA	1 cut(s)	538
Cac8I	GCNNGC	5 cut(s)	188, 247, 505, 536, 617
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	332, 388
Cfr13I	GGNCC	4 cut(s)	61, 542, 556, 613
CviAII	CATG	6 cut(s)	43, 334, 413, 422, 515, 626
CviJI	RGCY	9 cut(s)	270, 301, 503, 507, 534, 543, 600, 615, 619
CviKI_1	RGCY	9 cut(s)	270, 301, 503, 507, 534, 543, 600, 615, 619
DdeI	CTNAG	1 cut(s)	596
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	5 cut(s)	74, 80, 126, 397, 513
DpnII	GATC	5 cut(s)	72, 78, 124, 395, 511
Eco130I	CCWWGG	4 cut(s)	42, 259, 333, 412
Eco47I	GGWCC	2 cut(s)	61, 556
Eco72I	CACGTG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	51, 284, 450
EcoT14I	CCWWGG	4 cut(s)	42, 259, 333, 412
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	4 cut(s)	42, 259, 333, 412
FaeI	CATG	6 cut(s)	46, 337, 416, 425, 518, 629
FaqI	GGGAC	2 cut(s)	347, 643
FatI	CATG	6 cut(s)	42, 333, 412, 421, 514, 625
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	90, 184, 442
FokI	GGATG	2 cut(s)	24, 245
Fsp4HI	GCNGC	3 cut(s)	90, 184, 442
FspBI	CTAG	2 cut(s)	128, 480
GlaI	GCGC	2 cut(s)	331, 387
GluI	GCNGC	3 cut(s)	90, 184, 442
HaeII	RGCGCY	2 cut(s)	333, 389
HaeIII	GGCC	2 cut(s)	543, 615
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	2 cut(s)	332, 388
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	6 cut(s)	46, 337, 416, 425, 518, 629
Hin6I	GCGC	2 cut(s)	330, 386
HinP1I	GCGC	2 cut(s)	330, 386
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	293, 470
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	3 cut(s)	29, 191, 514
Hpy166II	GTNNAC	3 cut(s)	64, 370, 608
Hpy188I	TCNGA	3 cut(s)	292, 298, 511
Hpy188III	TCNNGA	4 cut(s)	76, 128, 137, 537
Hpy8I	GTNNAC	3 cut(s)	64, 370, 608
HpyAV	CCTTC	2 cut(s)	312, 357
HpyCH4III	ACNGT	2 cut(s)	134, 361
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	5 cut(s)	92, 277, 308, 548, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 540
HpyF3I	CTNAG	1 cut(s)	596
HpySE526I	ACGT	1 cut(s)	85
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	6 cut(s)	46, 337, 416, 425, 518, 629
HspAI	GCGC	2 cut(s)	330, 386
KasI	GGCGCC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	72, 78, 124, 395, 511
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	3 cut(s)	76, 195, 453
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	128, 480
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	311, 520
MalI	GATC	5 cut(s)	74, 80, 126, 397, 513
MboI	GATC	5 cut(s)	72, 78, 124, 395, 511
MflI	RGATCY	2 cut(s)	78, 124
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	3 cut(s)	56, 98, 661
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	270, 498
MnlI	CCTC	4 cut(s)	157, 261, 354, 533
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	3 cut(s)	204, 320, 411
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	4 cut(s)	53, 286, 365, 452
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	3 cut(s)	53, 286, 452
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	2 cut(s)	255, 540
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	1 cut(s)	365
NcoI	CCATGG	3 cut(s)	42, 333, 412
NdeII	GATC	5 cut(s)	72, 78, 124, 395, 511
NlaIII	CATG	6 cut(s)	46, 337, 416, 425, 518, 629
NlaIV	GGNNCC	3 cut(s)	331, 418, 557
NmuCI	GTSAC	2 cut(s)	311, 520
NruI	TCGCGA	1 cut(s)	538
OliI	CACNNNNGTG	2 cut(s)	204, 320
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	3 cut(s)	58, 457, 626
PkrI	GCNGC	3 cut(s)	91, 185, 443
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	333
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	3 cut(s)	51, 284, 450
PspCI	CACGTG	1 cut(s)	86
PspGI	CCWGG	3 cut(s)	51, 284, 450
PspN4I	GGNNCC	3 cut(s)	331, 418, 557
PspPI	GGNCC	4 cut(s)	61, 542, 556, 613
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	78, 124
RruI	TCGCGA	1 cut(s)	538
RseI	CAYNNNNRTG	3 cut(s)	204, 320, 411
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	90, 184, 442
Sau3AI	GATC	5 cut(s)	72, 78, 124, 395, 511
Sau96I	GGNCC	4 cut(s)	61, 542, 556, 613
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	53, 286, 365, 452
SduI	GDGCHC	1 cut(s)	610
SetI	ASST	7 cut(s)	69, 88, 265, 282, 290, 505, 536
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	331
SinI	GGWCC	2 cut(s)	61, 556
SmiMI	CAYNNNNRTG	3 cut(s)	204, 320, 411
Sse9I	AATT	3 cut(s)	56, 98, 661
SsiI	CCGC	1 cut(s)	230
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	128, 480
StyD4I	CCNGG	4 cut(s)	51, 284, 363, 450
StyI	CCWWGG	4 cut(s)	42, 259, 333, 412
TaaI	ACNGT	2 cut(s)	134, 361
TaiI	ACGT	1 cut(s)	88
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	3 cut(s)	56, 98, 661
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	4 cut(s)	209, 226, 322, 462
TseFI	GTSAC	2 cut(s)	311, 520
TseI	GCWGC	3 cut(s)	89, 183, 441
Tsp45I	GTSAC	2 cut(s)	311, 520
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	4 cut(s)	209, 226, 322, 462
Van91I	CCANNNNNTGG	3 cut(s)	58, 457, 626
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	61, 556
XbaI	TCTAGA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 623
XspI	CTAG	2 cut(s)	128, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.