Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

21433080 .. 21433813

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAATGGAGATGGAGATGGAAAGCTATATGAAAGACAGCAATGTAGGTGTTGGTGTCGTCGGTGGAGGAGTAGAGACGCCCACTGACACTGCCAATCACAAGCTTGCAGCTCGGGCCTTGCTGGAGTCGTGGATCCTAGCCTTGATTTTTGGAGCTGTATGTCAATTTATAAAAGCAAAAGGTAGTTGGGAGATTAACGAGACGAATACAACGGAGAAAGCAATTGCAACTAGGTACTACTGTAACAGATGTCGTCATGTGGTCACTGTGGATGTCGAAACATCATGCCCTTCCTGCCAAGGCGGCTTCATCCAAGCATGCGAGGGTGTTGCCTCACTATACCTAGCCATGCCATCCGAGTCTGAGCTTTCTGAAAGTGGTTCAGATGGAGAGAGCACCACTGTAATTTATCCTTTGATTAAACTTTCCTTGTCTGAGCTCTTAAAACAGATATTTTCTTCTCGTATAGATTTATCATTTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

164

Amino Acids

17.78

Weight (kDa)

4.61

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	130, 143
AcsI	RAATTY	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	485
AluBI	AGCT	6 cut(s)	27, 106, 113, 158, 370, 442
AluI	AGCT	6 cut(s)	27, 106, 113, 158, 370, 442
Alw21I	GWGCWC	2 cut(s)	401, 444
Alw26I	GTCTC	2 cut(s)	71, 197
AlwI	GGATC	2 cut(s)	130, 143
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BamHI	GGATCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	401, 444
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	4 cut(s)	7, 13, 364, 383
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BcoDI	GTCTC	2 cut(s)	71, 197
BfaI	CTAG	3 cut(s)	140, 234, 347
BglI	GCCNNNNNGGC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	111, 307
BlsI	GCNGC	2 cut(s)	112, 308
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	280, 312, 356
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	357, 429
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	401, 444
BsiHKCI	CYCGRG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	71, 197
BsmBI	CGTCTC	2 cut(s)	71, 197
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	401, 444
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	358, 430
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	130, 143
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	245, 271, 406
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	108, 322
BstDEI	CTNAG	2 cut(s)	366, 438
BstF5I	GGATG	3 cut(s)	280, 312, 356
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	71, 197
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 297, 306
BstNSI	RCATGY	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	280, 312, 356
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	4 cut(s)	84, 90, 267, 402
Cac8I	GCNNGC	2 cut(s)	108, 322
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	260, 288, 321, 352
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	366, 438
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco88I	CYCGRG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	2 cut(s)	71, 197
FaeI	CATG	4 cut(s)	263, 291, 324, 355
FatI	CATG	4 cut(s)	259, 287, 320, 351
Fnu4HI	GCNGC	2 cut(s)	111, 307
FokI	GGATG	3 cut(s)	287, 299, 343
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	111, 307
FspBI	CTAG	3 cut(s)	140, 234, 347
GluI	GCNGC	2 cut(s)	111, 307
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	263, 291, 324, 355
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	128, 362
Hpy188I	TCNGA	5 cut(s)	361, 367, 376, 388, 439
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	3 cut(s)	245, 271, 406
HpyCH4V	TGCA	2 cut(s)	110, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 297, 306
HpyF3I	CTNAG	2 cut(s)	366, 438
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	263, 291, 324, 355
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	2 cut(s)	110, 310
Lsp1109I	GCAGC	1 cut(s)	122
MaeI	CTAG	3 cut(s)	140, 234, 347
MaeIII	GTNAC	2 cut(s)	245, 265
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	453
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	401, 444
MluCI	AATT	4 cut(s)	167, 225, 408, 486
MlyI	GAGTC	2 cut(s)	137, 371
MnlI	CCTC	3 cut(s)	62, 319, 346
MseI	TTAA	3 cut(s)	198, 423, 446
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	116, 297, 306
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	4 cut(s)	263, 291, 324, 355
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	112, 308
PleI	GAGTC	2 cut(s)	136, 370
PpsI	GAGTC	2 cut(s)	136, 370
PsiI	TTATAA	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	198, 423, 446
SatI	GCNGC	2 cut(s)	111, 307
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	137, 371
SduI	GDGCHC	2 cut(s)	401, 444
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	4 cut(s)	167, 225, 408, 486
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	3 cut(s)	140, 234, 347
SstI	GAGCTC	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	245, 271, 406
TaqI	TCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	167, 225, 408, 486
TauI	GCSGC	1 cut(s)	309
Tru1I	TTAA	3 cut(s)	198, 423, 446
Tru9I	TTAA	3 cut(s)	198, 423, 446
TscAI	CASTG	4 cut(s)	91, 97, 274, 409
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	47, 301
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	4 cut(s)	91, 97, 274, 409
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	324
XspI	CTAG	3 cut(s)	140, 234, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.