Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

34127179 .. 34128841

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGACAGCATTTTGTGTGAAAGACTGATTCCAGAGAATCCCATTGCAATCCAGGAAAAGCTCCGCATTGCAGTCTTGATCTCAAAAGCTGCATTCCAATTCATTAACGGAATAAATGGTTTAGATCTGGACAGTCGGGACAAGGAACAGACAGAGAGAACAGAGCAAGTGAATAATGTTGGCTGCAGGTATTACTGTCACCAGTGTGATCAACTGGTCAGTGCTACTGTGGATGTAAACATGGCATGCCCTCTTTGCCAAGGCTGTTTTATGCAAGAATGTGGTGGTGTCAGCTCATTGCATCTTGCCATGCCGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATGGGGATGGCGCCATGGTAACCCCTCCTTGCAATCAAACAGTCCCGGACATTGTCGACAACAACAATGGTTCAGCACCAAACAGATCTCATAGCCTTGGTTCCCATGATTACGACAACTACGGCGGGACAGACCAGGCACCAGCACATGATGATTCAAACCTTAGTCGGTCATTTTTACGAGTTCGCTCTTATCGTGCTCTCACCAGCAATGACGTGCCAGGCCATGAGGTCCATTCTGAACTTGATTCTGAGTTGCGTCCACTTAGCCTTGGTTCAAATGTTGGCCCTGTCCAGCCACATCATGGGACAAGGGTAGTCATCAAAACTCATTACTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

230

Amino Acids

24.95

Weight (kDa)

4.96

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
AccB1I	GGYRCC	2 cut(s)	356, 484
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	2 cut(s)	64, 471
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	2 cut(s)	504, 624
AjiI	CACGTC	1 cut(s)	562
AjnI	CCWGG	3 cut(s)	51, 480, 565
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	61, 89, 294
AluI	AGCT	3 cut(s)	61, 89, 294
Alw21I	GWGCWC	1 cut(s)	547
AoxI	GGCC	2 cut(s)	568, 631
ApeKI	GCWGC	2 cut(s)	89, 183
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	577, 632
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	191, 541
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	2 cut(s)	356, 484
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	76, 170
BccI	CCATC	2 cut(s)	341, 347
BceAI	ACGGC	2 cut(s)	298, 484
BciT130I	CCWGG	3 cut(s)	53, 482, 567
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	177
BglII	AGATCT	2 cut(s)	124, 431
BisI	GCNGC	2 cut(s)	90, 184
BlsI	GCNGC	2 cut(s)	91, 185
Bme1390I	CCNGG	4 cut(s)	53, 392, 482, 567
Bme18I	GGWCC	1 cut(s)	577
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	577, 632
BmiI	GGNNCC	3 cut(s)	358, 448, 486
BmrFI	CCNGG	4 cut(s)	53, 392, 482, 567
BmsI	GCATC	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	4 cut(s)	259, 360, 442, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse1I	ACTGG	2 cut(s)	202, 219
Bse3DI	GCAATG	4 cut(s)	42, 66, 296, 562
BseBI	CCWGG	3 cut(s)	53, 482, 567
BseDI	CCNNGG	4 cut(s)	259, 360, 442, 616
BseGI	GGATG	2 cut(s)	238, 358
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	4 cut(s)	42, 66, 296, 562
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	202, 219
BseXI	GCAGC	2 cut(s)	76, 170
BshFI	GGCC	2 cut(s)	570, 633
BshNI	GGYRCC	2 cut(s)	356, 484
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	4 cut(s)	152, 374, 487, 667
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmFI	GGGAC	4 cut(s)	152, 374, 487, 667
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	570, 633
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	78, 124, 208, 431
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	2 cut(s)	64, 471
BspANI	GGCC	2 cut(s)	570, 633
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	358, 448, 486
BspMAI	CTGCAG	1 cut(s)	188
BspMI	ACCTGC	1 cut(s)	177
BspT107I	GGYRCC	2 cut(s)	356, 484
BsrDI	GCAATG	4 cut(s)	42, 66, 296, 562
BsrI	ACTGG	2 cut(s)	202, 219
BssECI	CCNNGG	4 cut(s)	259, 360, 442, 616
BssMI	GATC	4 cut(s)	78, 124, 208, 431
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	4 cut(s)	259, 360, 442, 616
Bst2UI	CCWGG	3 cut(s)	53, 482, 567
Bst4CI	ACNGT	5 cut(s)	134, 197, 229, 388, 683
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	509, 597, 611
BstDSI	CCRYGG	1 cut(s)	360
BstEII	GGTNACC	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	238, 358
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	81, 127, 211, 434
BstMBI	GATC	4 cut(s)	78, 124, 208, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	3 cut(s)	53, 482, 567
BstNSI	RCATGY	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	364
BstSCI	CCNGG	4 cut(s)	51, 390, 480, 565
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	76, 170
BstX2I	RGATCY	2 cut(s)	124, 431
BstYI	RGATCY	2 cut(s)	124, 431
BsuRI	GGCC	2 cut(s)	570, 633
BtgI	CCRYGG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	238, 358
BtsIMutI	CAGTG	3 cut(s)	209, 226, 342
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	577, 632
CseI	GACGC	1 cut(s)	593
CviAII	CATG	8 cut(s)	241, 246, 310, 361, 452, 494, 572, 650
DdeI	CTNAG	3 cut(s)	509, 597, 611
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	4 cut(s)	80, 126, 210, 433
DpnII	GATC	4 cut(s)	78, 124, 208, 431
Eco130I	CCWWGG	4 cut(s)	259, 360, 442, 616
Eco47I	GGWCC	1 cut(s)	577
Eco91I	GGTNACC	1 cut(s)	364
EcoO65I	GGTNACC	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	51, 480, 565
EcoT14I	CCWWGG	4 cut(s)	259, 360, 442, 616
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	4 cut(s)	259, 360, 442, 616
FaeI	CATG	8 cut(s)	244, 249, 313, 364, 455, 497, 575, 653
FaqI	GGGAC	4 cut(s)	152, 374, 487, 667
FatI	CATG	8 cut(s)	240, 245, 309, 360, 451, 493, 571, 649
FauI	CCCGC	1 cut(s)	464
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	90, 184
FokI	GGATG	2 cut(s)	245, 365
Fsp4HI	GCNGC	2 cut(s)	90, 184
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	90, 184
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	570, 633
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	8 cut(s)	244, 249, 313, 364, 455, 497, 575, 653
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	5 cut(s)	28, 37, 320, 500, 593
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	2 cut(s)	191, 541
Hpy166II	GTNNAC	3 cut(s)	238, 403, 608
Hpy188I	TCNGA	4 cut(s)	319, 325, 586, 598
Hpy188III	TCNNGA	4 cut(s)	32, 76, 128, 137
Hpy8I	GTNNAC	3 cut(s)	238, 403, 608
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	5 cut(s)	134, 197, 229, 388, 683
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	8 cut(s)	47, 71, 92, 186, 274, 301, 335, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	3 cut(s)	509, 597, 611
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	8 cut(s)	244, 249, 313, 364, 455, 497, 575, 653
HspAI	GCGC	1 cut(s)	357
KasI	GGCGCC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	78, 124, 208, 431
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	2 cut(s)	76, 170
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	197, 338, 364
MalI	GATC	4 cut(s)	80, 126, 210, 433
MboI	GATC	4 cut(s)	78, 124, 208, 431
MflI	RGATCY	2 cut(s)	124, 431
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	2 cut(s)	98, 685
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	261, 381, 568
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	4 cut(s)	53, 392, 482, 567
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	3 cut(s)	53, 482, 567
MwoI	GCNNNNNNNGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	4 cut(s)	78, 124, 208, 431
NlaIII	CATG	8 cut(s)	244, 249, 313, 364, 455, 497, 575, 653
NlaIV	GGNNCC	3 cut(s)	358, 448, 486
NmuCI	GTSAC	2 cut(s)	197, 338
NspI	RCATGY	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	538
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	4 cut(s)	28, 37, 500, 593
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	650
PfoI	TCCNGGA	2 cut(s)	51, 390
PkrI	GCNGC	2 cut(s)	91, 185
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	3 cut(s)	51, 480, 565
PspEI	GGTNACC	1 cut(s)	364
PspGI	CCWGG	3 cut(s)	51, 480, 565
PspN4I	GGNNCC	3 cut(s)	358, 448, 486
PspPI	GGNCC	2 cut(s)	577, 632
PstI	CTGCAG	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	124, 431
PsyI	GACNNNGTC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	90, 184
Sau3AI	GATC	4 cut(s)	78, 124, 208, 431
Sau96I	GGNCC	2 cut(s)	577, 632
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	4 cut(s)	53, 392, 482, 567
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	7 cut(s)	63, 91, 191, 296, 510, 564, 579
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	184
SfoI	GGCGCC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	204
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	2 cut(s)	98, 685
SsiI	CCGC	2 cut(s)	64, 471
SspDI	GGCGCC	1 cut(s)	356
StyD4I	CCNGG	4 cut(s)	51, 390, 480, 565
StyI	CCWWGG	4 cut(s)	259, 360, 442, 616
TaaI	ACNGT	5 cut(s)	134, 197, 229, 388, 683
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	2 cut(s)	98, 685
TfiI	GAWTC	4 cut(s)	28, 37, 500, 593
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	3 cut(s)	209, 226, 349
TseFI	GTSAC	2 cut(s)	197, 338
TseI	GCWGC	2 cut(s)	89, 183
Tsp45I	GTSAC	2 cut(s)	197, 338
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	209, 226, 349
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	577
XceI	RCATGY	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.