Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

35078446 .. 35080661

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG266500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGGAAATTATGTTCCTTGGTCAAGAACCAGAACAGAAGCTTTCTCTTCACTCCAAGTTCTCTACGCGTTACGAACAGCAGGGAGCAGCTATTTCCAGTGCCAACCAGGAAAAGTTCTGCTTTGCAATCTTGCTCTCACAAGCTGCATTCAGATTTATCAATGGCATAGATGGTTTAGATCTAGATAGTCAGCACAAGGAACAGACAGAGAGAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCACCAGTGTGATCAACTGATCACTGTCCTTGTGGATGTCACTATGACATGCCCTCTTTGCCAAGGCTGCTTTATGGAAGAATGTAGTGGTGCCATGCCGTCGGAGTCAGAGCCTTCTGCAAGGGACTCTGATGAGCGTGGTGCCATGGTAATCCCTTCTTCCAATCAAACGGTCCTGAACATTGTCGAGAACAACAATGGTTCAGCGCCAAACAGATCCCCTTTTCATAGCCTCGGTTCCCATGATTACGACAACTATGGCGAGACACACCAGGCAGCAGGGCATGATGATTCCAACCTGAAAACCAGCAATACCGTTAGCGTGCCAGGCCATGTGGTCCCTTATGTTTCAAGTTCCAATAGTGGGTCGCTTCCACTTAACCTTGTTGCGAATGTTGGCCCTGACCAGCCACATCATGGGACAAGGATTACTTCATCCGGCTGGATCTTTTCAGCCACTGGTTTCGGCTTTGAGGCTGTTTCGGCATTTTTTGATCAGGTTTCCACCCCACGGAAGACTCGTTATGCATTATGTGGCATGCTTTTGTCTATTGTGGCTGTACTTGTTTGCATCTTGGACCTCATTCTCAATGCCATGAAACAAAGAAGAATCACGTCTGAGAGTAACAGACTTTGGGGTATCTTACCAGAAGTTTTTGGATTAGCTCTCGCCTGTATTCAGTGCATTAGCTCGGCACTGCAGTATTCATTTCTCTGCAGGCATGCTGCTAATCCTTTGAAAGTATCCCTCGTGCCTTTCTTATTTTTCTTCGTCTTGTATGCTTTCAAACATAGGAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

38.95

Weight (kDa)

5.72

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AccB1I	GGYRCC	2 cut(s)	344, 395
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccII	CGCG	1 cut(s)	70
AclWI	GGATC	2 cut(s)	465, 707
AfaI	GTAC	1 cut(s)	816
AfiI	CCNNNNNNNGG	3 cut(s)	618, 671, 765
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	606, 994, 1042
AjiI	CACGTC	1 cut(s)	870
AjnI	CCWGG	3 cut(s)	108, 525, 580
AleI	CACNNNNGTG	1 cut(s)	261
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	5 cut(s)	43, 92, 146, 920, 945
AluI	AGCT	5 cut(s)	43, 92, 146, 920, 945
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	465, 707
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	2 cut(s)	583, 652
ApeKI	GCWGC	6 cut(s)	89, 146, 240, 321, 530, 980
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	4 cut(s)	427, 592, 653, 832
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	3 cut(s)	427, 592, 832
BanI	GGYRCC	2 cut(s)	344, 395
BauI	CACGAG	1 cut(s)	1004
BbsI	GAAGAC	1 cut(s)	776
BbvI	GCAGC	6 cut(s)	101, 133, 252, 308, 542, 967
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	3 cut(s)	110, 527, 582
BciVI	GTATCC	1 cut(s)	1009
BclI	TGATCA	3 cut(s)	265, 273, 748
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	2 cut(s)	953, 970
BfoI	RGCGCY	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	6 cut(s)	90, 147, 241, 322, 531, 981
BlsI	GCNGC	6 cut(s)	91, 148, 242, 323, 532, 982
Bme1390I	CCNGG	3 cut(s)	110, 527, 582
Bme18I	GGWCC	3 cut(s)	427, 592, 832
BmgBI	CACGTC	1 cut(s)	870
BmgT120I	GGNCC	4 cut(s)	427, 592, 653, 832
BmiI	GGNNCC	4 cut(s)	346, 397, 493, 594
BmrFI	CCNGG	3 cut(s)	110, 527, 582
BmsI	GCATC	1 cut(s)	834
BpiI	GAAGAC	1 cut(s)	776
BsaJI	CCNNGG	5 cut(s)	19, 316, 399, 487, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	618, 671, 765
Bse1I	ACTGG	3 cut(s)	99, 259, 718
BseBI	CCWGG	3 cut(s)	110, 527, 582
BseDI	CCNNGG	5 cut(s)	19, 316, 399, 487, 764
BseGI	GGATG	2 cut(s)	295, 689
BseLI	CCNNNNNNNGG	3 cut(s)	618, 671, 765
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	3 cut(s)	99, 259, 718
BseXI	GCAGC	6 cut(s)	101, 133, 252, 308, 542, 967
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	585, 654
BshNI	GGYRCC	2 cut(s)	344, 395
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	3 cut(s)	392, 578, 688
BslI	CCNNNNNNNGG	3 cut(s)	618, 671, 765
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	3 cut(s)	392, 578, 688
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	585, 654
Bsp143I	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
Bsp19I	CCATGG	1 cut(s)	399
BspANI	GGCC	2 cut(s)	585, 654
BspCNI	CTCAG	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	346, 397, 493, 594
BspMAI	CTGCAG	2 cut(s)	957, 974
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	465, 707
BspT107I	GGYRCC	2 cut(s)	344, 395
BsrI	ACTGG	3 cut(s)	99, 259, 718
BssECI	CCNNGG	5 cut(s)	19, 316, 399, 487, 764
BssMI	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
BssSI	CACGAG	1 cut(s)	1004
BssT1I	CCWWGG	3 cut(s)	19, 316, 399
Bst2BI	CACGAG	1 cut(s)	1004
Bst2UI	CCWGG	3 cut(s)	110, 527, 582
Bst4CI	ACNGT	4 cut(s)	254, 280, 427, 571
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	578, 794, 974, 978
BstDEI	CTNAG	1 cut(s)	873
BstDSI	CCRYGG	2 cut(s)	399, 764
BstF5I	GGATG	2 cut(s)	295, 689
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	6 cut(s)	184, 268, 276, 473, 702, 751
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	312, 321, 582, 737
BstNI	CCWGG	3 cut(s)	110, 527, 582
BstNSI	RCATGY	3 cut(s)	306, 796, 980
BstSCI	CCNGG	3 cut(s)	108, 525, 580
BstSFI	CTRYAG	2 cut(s)	953, 970
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	6 cut(s)	101, 133, 252, 308, 542, 967
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	3 cut(s)	181, 470, 699
BstYI	RGATCY	3 cut(s)	181, 470, 699
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	585, 654
BtgI	CCRYGG	2 cut(s)	399, 764
BtrI	CACGTC	1 cut(s)	870
BtsCI	GGATG	2 cut(s)	295, 689
BtsI	GCAGTG	1 cut(s)	950
BtsIMutI	CAGTG	6 cut(s)	106, 266, 276, 711, 941, 950
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	4 cut(s)	578, 794, 974, 978
CaiI	CAGNNNCTG	1 cut(s)	713
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	4 cut(s)	427, 592, 653, 832
Csp6I	GTAC	1 cut(s)	815
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	6 cut(s)	183, 267, 275, 472, 701, 750
DpnII	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	3 cut(s)	19, 316, 399
Eco47I	GGWCC	3 cut(s)	427, 592, 832
EcoRII	CCWGG	3 cut(s)	108, 525, 580
EcoT14I	CCWWGG	3 cut(s)	19, 316, 399
EcoT22I	ATGCAT	1 cut(s)	784
ErhI	CCWWGG	3 cut(s)	19, 316, 399
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 670, 702
FaqI	GGGAC	3 cut(s)	392, 578, 688
FbaI	TGATCA	3 cut(s)	265, 273, 748
Fnu4HI	GCNGC	6 cut(s)	90, 147, 241, 322, 531, 981
FokI	GGATG	2 cut(s)	302, 676
Fsp4HI	GCNGC	6 cut(s)	90, 147, 241, 322, 531, 981
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	6 cut(s)	90, 147, 241, 322, 531, 981
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	585, 654
HapII	CCGG	1 cut(s)	693
HhaI	GCGC	1 cut(s)	463
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	5 cut(s)	359, 380, 545, 772, 864
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	5 cut(s)	155, 358, 364, 385, 874
Hpy188III	TCNNGA	4 cut(s)	26, 185, 430, 442
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	3 cut(s)	378, 420, 1050
HpyCH4III	ACNGT	4 cut(s)	254, 280, 427, 571
HpyCH4IV	ACGT	1 cut(s)	869
HpyCH4V	TGCA	8 cut(s)	128, 149, 374, 782, 825, 939, 955, 972
HpyF10VI	GCNNNNNNNGC	4 cut(s)	312, 321, 582, 737
HpyF3I	CTNAG	1 cut(s)	873
HpySE526I	ACGT	1 cut(s)	869
HspAI	GCGC	1 cut(s)	461
Ksp22I	TGATCA	3 cut(s)	265, 273, 748
Kzo9I	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	6 cut(s)	101, 133, 252, 308, 542, 967
LweI	GCATC	1 cut(s)	834
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	869
MaeIII	GTNAC	4 cut(s)	71, 254, 292, 878
MalI	GATC	6 cut(s)	183, 267, 275, 472, 701, 750
MboI	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
MboII	GAAGA	6 cut(s)	41, 344, 405, 781, 873, 1015
MflI	RGATCY	3 cut(s)	181, 470, 699
MluCI	AATT	2 cut(s)	9, 1060
MluI	ACGCGT	1 cut(s)	68
MlyI	GAGTC	3 cut(s)	368, 374, 766
MmeI	TCCRAC	2 cut(s)	336, 573
MnlI	CCTC	6 cut(s)	214, 318, 497, 721, 845, 1013
Mph1103I	ATGCAT	1 cut(s)	784
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	2 cut(s)	261, 1050
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	3 cut(s)	110, 527, 582
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	3 cut(s)	110, 527, 582
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	312, 321, 582, 737
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
NlaIV	GGNNCC	4 cut(s)	346, 397, 493, 594
NmeAIII	GCCGAG	1 cut(s)	926
NmuCI	GTSAC	2 cut(s)	254, 292
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	3 cut(s)	306, 796, 980
OliI	CACNNNNGTG	1 cut(s)	261
PaeI	GCATGC	2 cut(s)	796, 980
PcsI	WCGNNNNNNNCGW	1 cut(s)	772
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	545, 864
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	6 cut(s)	91, 148, 242, 323, 532, 982
PleI	GAGTC	3 cut(s)	367, 374, 766
PpsI	GAGTC	3 cut(s)	367, 374, 766
Psp6I	CCWGG	3 cut(s)	108, 525, 580
PspGI	CCWGG	3 cut(s)	108, 525, 580
PspN4I	GGNNCC	4 cut(s)	346, 397, 493, 594
PspPI	GGNCC	4 cut(s)	427, 592, 653, 832
PstI	CTGCAG	2 cut(s)	957, 974
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	3 cut(s)	181, 470, 699
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
RseI	CAYNNNNRTG	2 cut(s)	261, 1050
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	6 cut(s)	90, 147, 241, 322, 531, 981
Sau3AI	GATC	6 cut(s)	181, 265, 273, 470, 699, 748
Sau96I	GGNCC	4 cut(s)	427, 592, 653, 832
SchI	GAGTC	3 cut(s)	368, 374, 766
ScrFI	CCNGG	3 cut(s)	110, 527, 582
SfaNI	GCATC	1 cut(s)	834
SfcI	CTRYAG	2 cut(s)	953, 970
SinI	GGWCC	3 cut(s)	427, 592, 832
SmiMI	CAYNNNNRTG	2 cut(s)	261, 1050
SphI	GCATGC	2 cut(s)	796, 980
Sse9I	AATT	2 cut(s)	9, 1060
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	108, 525, 580
StyI	CCWWGG	3 cut(s)	19, 316, 399
TaaI	ACNGT	4 cut(s)	254, 280, 427, 571
TaiI	ACGT	1 cut(s)	872
TaqI	TCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	9, 1060
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	2 cut(s)	545, 864
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	6 cut(s)	106, 266, 283, 718, 941, 957
TseFI	GTSAC	2 cut(s)	254, 292
TseI	GCWGC	6 cut(s)	89, 146, 240, 321, 530, 980
Tsp45I	GTSAC	2 cut(s)	254, 292
TspDTI	ATGAA	4 cut(s)	470, 678, 866, 951
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	6 cut(s)	106, 266, 283, 718, 941, 957
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	3 cut(s)	427, 592, 832
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	3 cut(s)	306, 796, 980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.