Rroxscaffold_1G00041750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002406
Physical Location & Seq
Forward (+)
59712644 .. 59715422
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041750.1

Sequence Viewer

Length: 366 bp
ATGGCATACCCTCTTTGCCAAGGCTGTTTTATGGAAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAACCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGAGTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGTAGAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTAAGGGTCGGACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.05

Weight (kDa)

5.75

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AciI CCGC 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 253
AjnI CCWGG 2 cut(s) 246, 334
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
AoxI GGCC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 250
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 2 cut(s) 248, 336
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 3 cut(s) 152, 248, 336
BmiI GGNNCC 2 cut(s) 214, 252
BmrFI CCNGG 3 cut(s) 152, 248, 336
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 19, 120, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 253
BseBI CCWGG 2 cut(s) 248, 336
BseDI CCNNGG 3 cut(s) 19, 120, 208
BseLI CCNNNNNNNGG 1 cut(s) 253
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 152, 254
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 214, 252
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 19, 120, 208
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 3 cut(s) 19, 120, 208
Bst2UI CCWGG 2 cut(s) 248, 336
Bst4CI ACNGT 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 255, 332
BstDSI CCRYGG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 234, 336
BstNI CCWGG 2 cut(s) 248, 336
BstNSI RCATGY 1 cut(s) 73
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 3 cut(s) 150, 246, 334
BstSNI TACGTA 1 cut(s) 293
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 255, 332
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 253
CviAII CATG 7 cut(s) 41, 70, 121, 218, 260, 311, 341
CviJI RGCY 6 cut(s) 24, 54, 88, 207, 303, 339
CviKI_1 RGCY 6 cut(s) 24, 54, 88, 207, 303, 339
DinI GGCGCC 1 cut(s) 252
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eco105I TACGTA 1 cut(s) 293
Eco130I CCWWGG 3 cut(s) 19, 120, 208
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 246, 334
EcoT14I CCWWGG 3 cut(s) 19, 120, 208
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
ErhI CCWWGG 3 cut(s) 19, 120, 208
FaeI CATG 7 cut(s) 44, 73, 124, 221, 263, 314, 344
FaqI GGGAC 1 cut(s) 134
FatI CATG 7 cut(s) 40, 69, 120, 217, 259, 310, 340
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 152, 254
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 7 cut(s) 44, 73, 124, 221, 263, 314, 344
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 3 cut(s) 80, 176, 266
HpaII CCGG 2 cut(s) 152, 254
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 79, 85, 307, 356
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 99, 144
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 61, 95, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 336
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 7 cut(s) 44, 73, 124, 221, 263, 314, 344
HspAI GCGC 1 cut(s) 251
KasI GGCGCC 1 cut(s) 250
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 7 cut(s) 165, 233, 260, 267, 321, 334, 348
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 3 cut(s) 98, 124, 316
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 2 cut(s) 89, 185
MmeI TCCRAC 4 cut(s) 57, 167, 294, 334
MnlI CCTC 3 cut(s) 21, 75, 141
MroNI GCCGGC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 2 cut(s) 152, 254
MspR9I CCNGG 3 cut(s) 152, 248, 336
MvaI CCWGG 2 cut(s) 248, 336
MwoI GCNNNNNNNGC 2 cut(s) 234, 336
NaeI GCCGGC 1 cut(s) 255
NarI GGCGCC 1 cut(s) 251
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 120
NdeII GATC 1 cut(s) 307
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 7 cut(s) 44, 73, 124, 221, 263, 314, 344
NlaIV GGNNCC 2 cut(s) 214, 252
NmuCI GTSAC 2 cut(s) 98, 316
NspI RCATGY 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 2 cut(s) 88, 184
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 2 cut(s) 88, 184
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 246, 334
PspEI GGTNACC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 246, 334
PspN4I GGNNCC 2 cut(s) 214, 252
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 2 cut(s) 89, 185
ScrFI CCNGG 3 cut(s) 152, 248, 336
SetI ASST 2 cut(s) 56, 295
SfoI GGCGCC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 45
SnaBI TACGTA 1 cut(s) 293
SsiI CCGC 1 cut(s) 237
SspDI GGCGCC 1 cut(s) 250
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 150, 246, 334
StyI CCWWGG 3 cut(s) 19, 120, 208
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 295
TaqII GACCGA 1 cut(s) 270
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 2 cut(s) 98, 316
Tsp45I GTSAC 2 cut(s) 98, 316
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 109
XceI RCATGY 1 cut(s) 73
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.