Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001204.1

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

6210 .. 8222

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001204.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggatagcggcttgagtgagaatttgatcggagtggcgccaccaccaccactatcgtcggagacggcaagccagcgatggaggagattgtgtggcctcctcaagaaccgcaagccaagcaaggagaagttcggactccgtgttgcagtgctgagtatatatgcacaataccaatttatcaacggaatagacaatctagatctagatagtcaggacgaggaacagacagagacaacagaggaagcaaatgttcctagcaggtattactgttatcagtgtcgtcaagtggtcagtgtcactgtggatgtcgaaatcacatgccctctctgccatggcggctgcatacaagaatgtagtaccgttggcctactctatcttactatgccatcagaatctgagcattctgctggtgattctgatggacagggcaccattctgatccatccttcaagtccaactgtcatagacattgtcgaggacagctatggttcagatcccaaccccaacaggtcccctttccatagcactggtttgtatgattacaacaactatgacgagtcacaccaggcaacgggaaattatgattctagtttggaacagggattacttacacttagcattgatgcaaatattgttgctaaccagcctcatcatgggacagtggttactacatcagtctggatcttttcagccactggtttcgcctttgaggctgtatcggcatttttcgatcaggtttccaccccacggaagcctcaatactcattgtatggcatgctgttgtccatcgtggctgtacttgtttgcatcttggacctcattcacaatgccctgatacaaagacaaagaggactcacatctgcgagtaacattctttggggtatcttgcccgaaatttttggtttagctctcgcatgtattcaatgcattagctcggcactgcagtttttatttctccataggcatgctgctaatcctatgaaaatatcgcttgtgcctttcttatttttcttcgttttgtttgctttcaaatatagagaaggaaggaatagaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.9

Weight (kDa)

5.15

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
AccB1I	GGYRCC	2 cut(s)	37, 428
AciI	CCGC	3 cut(s)	9, 109, 336
AclWI	GGATC	3 cut(s)	433, 488, 689
AcsI	RAATTY	2 cut(s)	22, 894
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	358, 798
AfiI	CCNNNNNNNGG	3 cut(s)	571, 653, 747
AgsI	TTSAA	3 cut(s)	450, 923, 1030
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	3 cut(s)	483, 908, 933
AluI	AGCT	3 cut(s)	483, 908, 933
Alw26I	GTCTC	2 cut(s)	56, 224
AlwI	GGATC	3 cut(s)	433, 488, 689
AlwNI	CAGNNNCTG	2 cut(s)	395, 695
AoxI	GGCC	2 cut(s)	94, 364
ApeKI	GCWGC	2 cut(s)	339, 968
ApoI	RAATTY	2 cut(s)	22, 894
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	510, 814
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	510, 814
BaeGI	GKGCMC	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	37, 428
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BbvI	GCAGC	2 cut(s)	326, 955
BccI	CCATC	5 cut(s)	72, 394, 413, 450, 794
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	56, 224
BfaI	CTAG	4 cut(s)	197, 203, 255, 588
BfmI	CTRYAG	1 cut(s)	941
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	249
BglI	GCCNNNNNGGC	2 cut(s)	336, 710
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	10, 337, 340, 969
BlsI	GCNGC	4 cut(s)	11, 338, 341, 970
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	2 cut(s)	510, 814
BmgT120I	GGNCC	2 cut(s)	510, 814
BmiI	GGNNCC	3 cut(s)	39, 430, 512
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	2 cut(s)	613, 816
BpuEI	CTTGAG	2 cut(s)	34, 86
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	331, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	3 cut(s)	571, 653, 747
Bse1I	ACTGG	2 cut(s)	532, 700
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	331, 746
BseGI	GGATG	2 cut(s)	310, 442
BseLI	CCNNNNNNNGG	3 cut(s)	571, 653, 747
BseMII	CTCAG	2 cut(s)	143, 387
BseNI	ACTGG	2 cut(s)	532, 700
BseRI	GAGGAG	2 cut(s)	89, 97
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	326, 955
BshFI	GGCC	2 cut(s)	96, 366
BshNI	GGYRCC	2 cut(s)	37, 428
BslFI	GGGAC	2 cut(s)	496, 670
BslI	CCNNNNNNNGG	3 cut(s)	571, 653, 747
BsmAI	GTCTC	2 cut(s)	56, 224
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	496, 670
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	96, 366
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	3 cut(s)	9, 109, 336
BspANI	GGCC	2 cut(s)	96, 366
BspCNI	CTCAG	2 cut(s)	144, 388
BspLI	GGNNCC	3 cut(s)	39, 430, 512
BspMAI	CTGCAG	1 cut(s)	945
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	3 cut(s)	433, 488, 689
BspT107I	GGYRCC	2 cut(s)	37, 428
BsrI	ACTGG	2 cut(s)	532, 700
BssECI	CCNNGG	2 cut(s)	331, 746
BssMI	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	5 cut(s)	269, 301, 361, 460, 661
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	5 cut(s)	70, 74, 113, 776, 966
BstDEI	CTNAG	3 cut(s)	152, 396, 614
BstDSI	CCRYGG	2 cut(s)	331, 746
BstF5I	GGATG	2 cut(s)	310, 442
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	30, 202, 441, 496, 684, 733
BstMAI	GTCTC	2 cut(s)	56, 224
BstMBI	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 327, 336, 710, 719
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	4 cut(s)	321, 778, 918, 968
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	941
BstSLI	GKGCMC	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	326, 955
BstX2I	RGATCY	3 cut(s)	199, 493, 681
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	3 cut(s)	199, 493, 681
BsuRI	GGCC	2 cut(s)	96, 366
BtgI	CCRYGG	2 cut(s)	331, 746
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	310, 442
BtsI	GCAGTG	2 cut(s)	153, 938
BtsIMutI	CAGTG	8 cut(s)	153, 281, 297, 298, 525, 666, 693, 938
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	5 cut(s)	70, 74, 113, 776, 966
CaiI	CAGNNNCTG	2 cut(s)	395, 695
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	510, 814
Csp6I	GTAC	2 cut(s)	357, 797
CviAII	CATG	6 cut(s)	318, 332, 653, 775, 915, 965
CviQI	GTAC	2 cut(s)	357, 797
DdeI	CTNAG	3 cut(s)	152, 396, 614
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	6 cut(s)	29, 201, 440, 495, 683, 732
DpnII	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
Eco130I	CCWWGG	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	510, 814
EcoO109I	RGGNCCY	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	929
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	6 cut(s)	321, 335, 656, 778, 918, 968
FaqI	GGGAC	2 cut(s)	496, 670
FatI	CATG	6 cut(s)	317, 331, 652, 774, 914, 964
Fnu4HI	GCNGC	4 cut(s)	10, 337, 340, 969
FokI	GGATG	2 cut(s)	317, 429
Fsp4HI	GCNGC	4 cut(s)	10, 337, 340, 969
FspBI	CTAG	4 cut(s)	197, 203, 255, 588
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	4 cut(s)	10, 337, 340, 969
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	96, 366
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	6 cut(s)	321, 335, 656, 778, 918, 968
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	6 cut(s)	135, 392, 413, 557, 584, 852
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	8 cut(s)	32, 61, 134, 391, 397, 418, 438, 493
Hpy188III	TCNNGA	5 cut(s)	103, 197, 203, 212, 679
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	456, 1034, 1038
HpyCH4III	ACNGT	5 cut(s)	269, 301, 361, 460, 661
HpyCH4V	TGCA	7 cut(s)	146, 164, 342, 626, 807, 927, 943
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 327, 336, 710, 719
HpyF3I	CTNAG	3 cut(s)	152, 396, 614
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	6 cut(s)	321, 335, 656, 778, 918, 968
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
Kzo9I	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
Lsp1109I	GCAGC	2 cut(s)	326, 955
LweI	GCATC	2 cut(s)	613, 816
MaeI	CTAG	4 cut(s)	197, 203, 255, 588
MaeIII	GTNAC	4 cut(s)	295, 558, 664, 866
MalI	GATC	6 cut(s)	29, 201, 440, 495, 683, 732
MboI	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
MboII	GAAGA	1 cut(s)	1003
MflI	RGATCY	3 cut(s)	199, 493, 681
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	4 cut(s)	22, 173, 577, 894
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	129, 566, 846
MmeI	TCCRAC	2 cut(s)	39, 479
Mph1103I	ATGCAT	1 cut(s)	929
MslI	CAYNNNNRTG	1 cut(s)	963
MspR9I	CCNGG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	5 cut(s)	117, 327, 336, 710, 719
NarI	GGCGCC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
NlaIII	CATG	6 cut(s)	321, 335, 656, 778, 918, 968
NlaIV	GGNNCC	3 cut(s)	39, 430, 512
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	2 cut(s)	295, 558
NsiI	ATGCAT	1 cut(s)	929
NspI	RCATGY	4 cut(s)	321, 778, 918, 968
PaeI	GCATGC	2 cut(s)	778, 968
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	392, 413, 584
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	11, 338, 341, 970
PleI	GAGTC	3 cut(s)	129, 565, 846
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	3 cut(s)	129, 565, 846
PpuMI	RGGWCCY	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	39, 430, 512
PspPI	GGNCC	2 cut(s)	510, 814
PspPPI	RGGWCCY	1 cut(s)	510
PsrI	GAACNNNNNNTAC	2 cut(s)	588, 620
PstI	CTGCAG	1 cut(s)	945
PstNI	CAGNNNCTG	2 cut(s)	395, 695
PsuI	RGATCY	3 cut(s)	199, 493, 681
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	358, 798
RsaNI	GTAC	2 cut(s)	357, 797
RseI	CAYNNNNRTG	1 cut(s)	963
SatI	GCNGC	4 cut(s)	10, 337, 340, 969
Sau3AI	GATC	6 cut(s)	27, 199, 438, 493, 681, 730
Sau96I	GGNCC	2 cut(s)	510, 814
SchI	GAGTC	3 cut(s)	129, 566, 846
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	8 cut(s)	263, 485, 512, 738, 819, 910, 935, 1057
SfaNI	GCATC	2 cut(s)	613, 816
SfcI	CTRYAG	1 cut(s)	941
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	2 cut(s)	510, 814
SmiMI	CAYNNNNRTG	1 cut(s)	963
SmlI	CTYRAG	2 cut(s)	13, 101
SmoI	CTYRAG	2 cut(s)	13, 101
SphI	GCATGC	2 cut(s)	778, 968
Sse9I	AATT	4 cut(s)	22, 173, 577, 894
SsiI	CCGC	3 cut(s)	9, 109, 336
SspDI	GGCGCC	1 cut(s)	37
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	4 cut(s)	197, 203, 255, 588
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	5 cut(s)	269, 301, 361, 460, 661
TaqI	TCGA	3 cut(s)	309, 474, 729
TasI	AATT	4 cut(s)	22, 173, 577, 894
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	2 cut(s)	12, 339
TfiI	GAWTC	3 cut(s)	392, 413, 584
TscAI	CASTG	8 cut(s)	153, 281, 298, 304, 532, 666, 700, 945
TseFI	GTSAC	2 cut(s)	295, 558
TseI	GCWGC	2 cut(s)	339, 968
Tsp45I	GTSAC	2 cut(s)	295, 558
TspDTI	ATGAA	1 cut(s)	995
TspGWI	ACGGA	3 cut(s)	128, 198, 763
TspRI	CASTG	8 cut(s)	153, 281, 298, 304, 532, 666, 700, 945
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	510, 814
XapI	RAATTY	2 cut(s)	22, 894
XbaI	TCTAGA	2 cut(s)	196, 202
XceI	RCATGY	4 cut(s)	321, 778, 918, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XspI	CTAG	4 cut(s)	197, 203, 255, 588
Zsp2I	ATGCAT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.