Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

34146448 .. 34149143

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGAGCGTTTTGGGTGAAAGACTGGTTGGAGAGCATCCCATGGCAACCCAGGAATTGTTCCGCACCGTCCACTTTGCAATCTTGACCTTATATGCTGCATGGCAATTTAGGAAAGGAATAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCACCAGTGTGCTGTCCCTTTGGATGTCAATATGGCATACCCTCTTTTCCAAGGCTGTTTTATGGAAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAATCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGGTTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGAACAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTCCCTTATGTTTCAAGTTCCAATAGTGGGTCGCCTCCACGTTACCTTGTTGCGAATGCTGGCACTGACCAGCCACATCATGGGACAAGGGTTACTTCATCGGTCTGGATCTTTTCAGCCATTGGTTTCGGATTTGAGGCTGTTTCAGCATTTTTTGATCAAGTTTCCACCCCACAGAAGCCTCACTATGCATTATATGGCATGCTGTTGTCTTTCGTGGCTGTACTGGTTTGCATATTGGACCTCATTCTCAATGCCAGGAAACAAAGCACATCTGAGAATAACATACTTTGGAATATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTATTCAGTTCACTAGCTCGGCCCTGCAGTTTTCATTTCTCTGCAGGCACGCTGCTAATCCTGTGAAAGTATCCGTTGTGCCTTTCTTATTTTTCTTCGTCTTGTTTGCTTTCAAATGTAGAAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

38.34

Weight (kDa)

5.93

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	487
AccB7I	CCANNNNNTGG	1 cut(s)	662
AciI	CCGC	2 cut(s)	64, 474
AclWI	GGATC	1 cut(s)	698
AcuI	CTGAAG	1 cut(s)	909
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	3 cut(s)	490, 609, 662
AgsI	TTSAA	2 cut(s)	597, 1027
AjnI	CCWGG	4 cut(s)	51, 483, 571, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	291, 905, 930
AluI	AGCT	3 cut(s)	291, 905, 930
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	2 cut(s)	574, 933
ApeKI	GCWGC	3 cut(s)	98, 192, 965
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	823, 934
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	29, 200, 547
AvaII	GGWCC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	487
BbvI	GCAGC	3 cut(s)	85, 204, 952
BccI	CCATC	2 cut(s)	119, 530
BciT130I	CCWGG	4 cut(s)	53, 485, 573, 841
BciVI	GTATCC	1 cut(s)	994
BclI	TGATCA	2 cut(s)	544, 739
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	3 cut(s)	137, 513, 927
BfmI	CTRYAG	2 cut(s)	938, 955
BfoI	RGCGCY	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	4 cut(s)	99, 193, 475, 966
BlsI	GCNGC	4 cut(s)	100, 194, 476, 967
Bme1390I	CCNGG	5 cut(s)	53, 389, 485, 573, 841
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	2 cut(s)	823, 934
BmiI	GGNNCC	2 cut(s)	451, 489
BmrFI	CCNGG	5 cut(s)	53, 389, 485, 573, 841
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	5 cut(s)	42, 51, 256, 357, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 609, 662
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	3 cut(s)	30, 211, 813
BseBI	CCWGG	4 cut(s)	53, 485, 573, 841
BseDI	CCNNGG	5 cut(s)	42, 51, 256, 357, 445
BseGI	GGATG	2 cut(s)	37, 235
BseLI	CCNNNNNNNGG	3 cut(s)	490, 609, 662
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	3 cut(s)	30, 211, 813
BseXI	GCAGC	3 cut(s)	85, 204, 952
BshFI	GGCC	2 cut(s)	576, 935
BshNI	GGYRCC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	389, 491
BslFI	GGGAC	4 cut(s)	206, 371, 569, 679
BslI	CCNNNNNNNGG	3 cut(s)	490, 609, 662
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	4 cut(s)	206, 371, 569, 679
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	576, 935
Bsp143I	GATC	3 cut(s)	544, 690, 739
Bsp19I	CCATGG	2 cut(s)	42, 357
BspACI	CCGC	2 cut(s)	64, 474
BspANI	GGCC	2 cut(s)	576, 935
BspCNI	CTCAG	1 cut(s)	850
BspLI	GGNNCC	2 cut(s)	451, 489
BspMAI	CTGCAG	2 cut(s)	942, 959
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	30, 211, 813
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	5 cut(s)	42, 51, 256, 357, 445
BssMI	GATC	3 cut(s)	544, 690, 739
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	4 cut(s)	42, 256, 357, 445
Bst2UI	CCWGG	4 cut(s)	53, 485, 573, 841
Bst4CI	ACNGT	4 cut(s)	70, 143, 206, 385
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	6 cut(s)	492, 569, 643, 785, 959, 963
BstDEI	CTNAG	1 cut(s)	858
BstDSI	CCRYGG	2 cut(s)	42, 357
BstF5I	GGATG	2 cut(s)	37, 235
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	547, 693, 742
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	544, 690, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	471, 573, 728
BstNI	CCWGG	4 cut(s)	53, 485, 573, 841
BstNSI	RCATGY	2 cut(s)	310, 787
BstSCI	CCNGG	5 cut(s)	51, 387, 483, 571, 839
BstSFI	CTRYAG	2 cut(s)	938, 955
BstV1I	GCAGC	3 cut(s)	85, 204, 952
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	2 cut(s)	576, 935
BtgI	CCRYGG	2 cut(s)	42, 357
BtsCI	GGATG	2 cut(s)	37, 235
BtsIMutI	CAGTG	3 cut(s)	218, 339, 645
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	6 cut(s)	492, 569, 643, 785, 959, 963
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	823, 934
Csp6I	GTAC	1 cut(s)	806
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	1 cut(s)	858
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	3 cut(s)	546, 692, 741
DpnII	GATC	3 cut(s)	544, 690, 739
DraI	TTTAAA	1 cut(s)	132
Eco130I	CCWWGG	4 cut(s)	42, 256, 357, 445
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	909
EcoRII	CCWGG	4 cut(s)	51, 483, 571, 839
EcoT14I	CCWWGG	4 cut(s)	42, 256, 357, 445
EcoT22I	ATGCAT	1 cut(s)	775
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
ErhI	CCWWGG	4 cut(s)	42, 256, 357, 445
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	4 cut(s)	206, 371, 569, 679
FbaI	TGATCA	2 cut(s)	544, 739
Fnu4HI	GCNGC	4 cut(s)	99, 193, 475, 966
FokI	GGATG	2 cut(s)	24, 242
Fsp4HI	GCNGC	4 cut(s)	99, 193, 475, 966
FspBI	CTAG	3 cut(s)	137, 513, 927
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	99, 193, 475, 966
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	576, 935
HapII	CCGG	2 cut(s)	389, 491
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	317, 503
HpaII	CCGG	2 cut(s)	389, 491
HphI	GGTGA	3 cut(s)	29, 200, 547
Hpy166II	GTNNAC	3 cut(s)	73, 400, 924
Hpy188I	TCNGA	5 cut(s)	316, 322, 544, 713, 859
Hpy188III	TCNNGA	4 cut(s)	85, 137, 146, 688
Hpy8I	GTNNAC	3 cut(s)	73, 400, 924
HpyAV	CCTTC	3 cut(s)	336, 381, 1035
HpyCH4III	ACNGT	4 cut(s)	70, 143, 206, 385
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	9 cut(s)	80, 101, 298, 332, 581, 773, 816, 940, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	471, 573, 728
HpyF3I	CTNAG	1 cut(s)	858
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	488
HspAI	GCGC	1 cut(s)	488
KasI	GGCGCC	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
Ksp22I	TGATCA	2 cut(s)	544, 739
Kzo9I	GATC	3 cut(s)	544, 690, 739
Lsp1109I	GCAGC	3 cut(s)	85, 204, 952
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	3 cut(s)	137, 513, 927
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	5 cut(s)	206, 335, 553, 623, 673
MalI	GATC	3 cut(s)	546, 692, 741
MboI	GATC	3 cut(s)	544, 690, 739
MboII	GAAGA	1 cut(s)	1000
MflI	RGATCY	1 cut(s)	690
MluCI	AATT	3 cut(s)	56, 107, 1045
Mly113I	GGCGCC	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	4 cut(s)	10, 294, 404, 531
MnlI	CCTC	8 cut(s)	166, 258, 312, 378, 627, 712, 774, 836
Mph1103I	ATGCAT	1 cut(s)	775
MroNI	GCCGGC	1 cut(s)	490
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	2 cut(s)	213, 282
MspI	CCGG	2 cut(s)	389, 491
MspR9I	CCNGG	5 cut(s)	53, 389, 485, 573, 841
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	4 cut(s)	53, 485, 573, 841
MwoI	GCNNNNNNNGC	3 cut(s)	471, 573, 728
NaeI	GCCGGC	1 cut(s)	492
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	2 cut(s)	42, 357
NdeII	GATC	3 cut(s)	544, 690, 739
NgoMIV	GCCGGC	1 cut(s)	490
NlaIV	GGNNCC	2 cut(s)	451, 489
NmeAIII	GCCGAG	1 cut(s)	911
NmuCI	GTSAC	3 cut(s)	206, 335, 553
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	2 cut(s)	310, 787
OliI	CACNNNNGTG	1 cut(s)	213
PaeI	GCATGC	1 cut(s)	787
PctI	GAATGC	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	100, 194, 476, 967
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	4 cut(s)	51, 483, 571, 839
PspGI	CCWGG	4 cut(s)	51, 483, 571, 839
PspN4I	GGNNCC	2 cut(s)	451, 489
PspPI	GGNCC	2 cut(s)	823, 934
PstI	CTGCAG	2 cut(s)	942, 959
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	2 cut(s)	213, 282
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	4 cut(s)	99, 193, 475, 966
Sau3AI	GATC	3 cut(s)	544, 690, 739
Sau96I	GGNCC	2 cut(s)	823, 934
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	5 cut(s)	53, 389, 485, 573, 841
SetI	ASST	9 cut(s)	92, 200, 293, 625, 630, 828, 889, 907, 932
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	2 cut(s)	938, 955
SfoI	GGCGCC	1 cut(s)	489
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	2 cut(s)	213, 282
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	3 cut(s)	56, 107, 1045
SsiI	CCGC	2 cut(s)	64, 474
SspDI	GGCGCC	1 cut(s)	487
SspMI	CTAG	3 cut(s)	137, 513, 927
StyD4I	CCNGG	5 cut(s)	51, 387, 483, 571, 839
StyI	CCWWGG	4 cut(s)	42, 256, 357, 445
TaaI	ACNGT	4 cut(s)	70, 143, 206, 385
TaiI	ACGT	1 cut(s)	625
TaqII	GACCGA	2 cut(s)	507, 673
TasI	AATT	3 cut(s)	56, 107, 1045
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	3 cut(s)	218, 346, 652
TseFI	GTSAC	3 cut(s)	206, 335, 553
TseI	GCWGC	3 cut(s)	98, 192, 965
Tsp45I	GTSAC	3 cut(s)	206, 335, 553
TspDTI	ATGAA	3 cut(s)	366, 669, 936
TspGWI	ACGGA	1 cut(s)	976
TspRI	CASTG	3 cut(s)	218, 346, 652
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	823
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	2 cut(s)	310, 787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XspI	CTAG	3 cut(s)	137, 513, 927
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.