Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

162838 .. 164820

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000400.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgggtagcagcttgagtgagagcttgatccgagtggcaccaccaccaccaccctcactatcgtcggagacggcaagacagcgatggaggagagggtggggcctcctcaagaaccgcaagccaagcaagataacgttcgccgatgaagaactgctgatgagatgtgcagaataccaatttatcaacggaataggcaatctaggtctagatagtcaggacgaggaacagacagagacaacagaggaagcaaatgttcctagcaggttttactgttatcagtgtcgtcaagtggtcagtgtcactgtggatgtcaaaattacatgccctctctgtcatagcggctggatacaagaatgtagtaccgttggcctactctatcttactatgccatcagaatctgagcattctgctggtgattctgatggacagggccccattctgttccatccttccagtccaactgtcatagacattgtcgaggacagctatggttcagatcccaaccccaacaggtccccttttcatagcactggttcctatgattacaacaactatgtcgagtcacaccagacaacgggcaattatgattctagtttggaacagggattacttacacttagcattgatgcaaatattgttcctaaccagcatcatcatgggacaggggttactactacatcagtctggatcttttcagccactggtttcacctttgaggctgtatcggcatttttcgatcaggtttccaccccacagaagcctcaatattcattgtatggcatgctgttgtccatcgtggctgtacctgtttgcatcctggacctgattcacaatgccctgagacaaagacagagaggactcacatctgcgagtaacattctttggggtatcttgcccgaaatttttggtttagctctcgcatgtattcaatgcattagctcgggactgcagtttttatttctctgtaggcatgctgctaatcctatgaaaatatcgctagtgcctttcttatttttcttagttttgtttgctttcaaatatagagaaggaaggaatagaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

39.24

Weight (kDa)

5.56

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	115, 339
AclI	AACGTT	1 cut(s)	134
AclWI	GGATC	3 cut(s)	22, 491, 695
AcsI	RAATTY	1 cut(s)	900
AfaI	GTAC	2 cut(s)	361, 804
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	929, 1036
AjnI	CCWGG	1 cut(s)	816
AluBI	AGCT	5 cut(s)	12, 24, 486, 914, 939
AluI	AGCT	5 cut(s)	12, 24, 486, 914, 939
Alw26I	GTCTC	3 cut(s)	62, 227, 835
AlwI	GGATC	3 cut(s)	22, 491, 695
AlwNI	CAGNNNCTG	2 cut(s)	398, 701
Ama87I	CYCGRG	1 cut(s)	940
AoxI	GGCC	3 cut(s)	100, 367, 430
ApaI	GGGCCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	9, 974
ApoI	RAATTY	1 cut(s)	900
AspS9I	GGNCC	5 cut(s)	100, 430, 431, 513, 820
AsuHPI	GGTGA	2 cut(s)	425, 700
AvaI	CYCGRG	1 cut(s)	940
AvaII	GGWCC	2 cut(s)	513, 820
BaeGI	GKGCMC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	21, 961
BccI	CCATC	5 cut(s)	78, 397, 416, 453, 800
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	818
BciVI	GTATCC	1 cut(s)	339
BcoDI	GTCTC	3 cut(s)	62, 227, 835
BfaI	CTAG	5 cut(s)	200, 206, 258, 591, 998
BfmI	CTRYAG	2 cut(s)	947, 964
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	10, 340, 975
BlsI	GCNGC	3 cut(s)	11, 341, 976
Bme1390I	CCNGG	1 cut(s)	818
Bme18I	GGWCC	2 cut(s)	513, 820
BmeT110I	CYCGRG	1 cut(s)	940
BmgT120I	GGNCC	5 cut(s)	100, 430, 431, 513, 820
BmiI	GGNNCC	6 cut(s)	39, 101, 432, 433, 515, 535
BmrFI	CCNGG	1 cut(s)	818
BmsI	GCATC	3 cut(s)	616, 658, 822
BpuEI	CTTGAG	2 cut(s)	34, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	453, 535, 706
BseBI	CCWGG	1 cut(s)	818
BseGI	GGATG	3 cut(s)	313, 445, 813
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	390, 830
BseNI	ACTGG	3 cut(s)	453, 535, 706
BseRI	GAGGAG	2 cut(s)	95, 103
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	21, 961
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	102, 369, 432
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	940
BslFI	GGGAC	3 cut(s)	499, 673, 957
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	3 cut(s)	62, 227, 835
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	499, 673, 957
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	102, 369, 432
BsoBI	CYCGRG	1 cut(s)	940
Bsp120I	GGGCCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	27, 496, 687, 736
BspACI	CCGC	2 cut(s)	115, 339
BspANI	GGCC	3 cut(s)	102, 369, 432
BspCNI	CTCAG	2 cut(s)	391, 831
BspLI	GGNNCC	6 cut(s)	39, 101, 432, 433, 515, 535
BspMAI	CTGCAG	1 cut(s)	951
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	22, 491, 695
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	453, 535, 706
BssMI	GATC	4 cut(s)	27, 496, 687, 736
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	4 cut(s)	272, 304, 364, 463
BstC8I	GCNNGC	3 cut(s)	119, 782, 972
BstDEI	CTNAG	4 cut(s)	399, 617, 839, 1018
BstF5I	GGATG	3 cut(s)	313, 445, 813
BstKTI	GATC	4 cut(s)	30, 499, 690, 739
BstMAI	GTCTC	3 cut(s)	62, 227, 835
BstMBI	GATC	4 cut(s)	27, 496, 687, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 725
BstNI	CCWGG	1 cut(s)	818
BstNSI	RCATGY	4 cut(s)	324, 784, 924, 974
BstSCI	CCNGG	1 cut(s)	816
BstSFI	CTRYAG	2 cut(s)	947, 964
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	21, 961
BstX2I	RGATCY	2 cut(s)	496, 687
BstYI	RGATCY	2 cut(s)	496, 687
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	102, 369, 432
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	313, 445, 813
BtsIMutI	CAGTG	5 cut(s)	284, 300, 301, 528, 699
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	119, 782, 972
CaiI	CAGNNNCTG	2 cut(s)	398, 701
Cfr13I	GGNCC	5 cut(s)	100, 430, 431, 513, 820
Csp6I	GTAC	2 cut(s)	360, 803
CviAII	CATG	5 cut(s)	321, 656, 781, 921, 971
CviQI	GTAC	2 cut(s)	360, 803
DdeI	CTNAG	4 cut(s)	399, 617, 839, 1018
DpnI	GATC	4 cut(s)	29, 498, 689, 738
DpnII	GATC	4 cut(s)	27, 496, 687, 736
Eco24I	GRGCYC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	513, 820
Eco88I	CYCGRG	1 cut(s)	940
EcoO109I	RGGNCCY	4 cut(s)	100, 430, 431, 513
EcoRII	CCWGG	1 cut(s)	816
EcoT22I	ATGCAT	1 cut(s)	935
EcoT38I	GRGCYC	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	5 cut(s)	324, 659, 784, 924, 974
FaqI	GGGAC	3 cut(s)	499, 673, 957
FatI	CATG	5 cut(s)	320, 655, 780, 920, 970
Fnu4HI	GCNGC	3 cut(s)	10, 340, 975
FokI	GGATG	3 cut(s)	320, 432, 800
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	3 cut(s)	10, 340, 975
FspBI	CTAG	5 cut(s)	200, 206, 258, 591, 998
GluI	GCNGC	3 cut(s)	10, 340, 975
HaeIII	GGCC	3 cut(s)	102, 369, 432
Hin1II	CATG	5 cut(s)	324, 659, 784, 924, 974
HinfI	GANTC	6 cut(s)	395, 416, 560, 587, 826, 858
HphI	GGTGA	2 cut(s)	425, 700
Hpy188I	TCNGA	6 cut(s)	32, 67, 394, 400, 421, 496
Hpy188III	TCNNGA	5 cut(s)	109, 206, 215, 685, 942
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	459, 1040, 1044
HpyCH4III	ACNGT	4 cut(s)	272, 304, 364, 463
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	5 cut(s)	167, 629, 813, 933, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 725
HpyF3I	CTNAG	4 cut(s)	399, 617, 839, 1018
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	324, 659, 784, 924, 974
Kzo9I	GATC	4 cut(s)	27, 496, 687, 736
Lsp1109I	GCAGC	2 cut(s)	21, 961
LweI	GCATC	3 cut(s)	616, 658, 822
MaeI	CTAG	5 cut(s)	200, 206, 258, 591, 998
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	4 cut(s)	298, 561, 667, 872
MalI	GATC	4 cut(s)	29, 498, 689, 738
MboI	GATC	4 cut(s)	27, 496, 687, 736
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	2 cut(s)	496, 687
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	4 cut(s)	176, 315, 580, 900
MlyI	GAGTC	2 cut(s)	569, 852
MmeI	TCCRAC	2 cut(s)	45, 482
Mph1103I	ATGCAT	1 cut(s)	935
MslI	CAYNNNNRTG	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	818
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	818
MwoI	GCNNNNNNNGC	2 cut(s)	123, 725
NdeII	GATC	4 cut(s)	27, 496, 687, 736
NlaIII	CATG	5 cut(s)	324, 659, 784, 924, 974
NlaIV	GGNNCC	6 cut(s)	39, 101, 432, 433, 515, 535
NmuCI	GTSAC	2 cut(s)	298, 561
NsiI	ATGCAT	1 cut(s)	935
NspI	RCATGY	4 cut(s)	324, 784, 924, 974
PaeI	GCATGC	2 cut(s)	784, 974
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	4 cut(s)	395, 416, 587, 826
PflFI	GACNNNGTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	3 cut(s)	11, 341, 976
PleI	GAGTC	2 cut(s)	568, 852
PpsI	GAGTC	2 cut(s)	568, 852
PpuMI	RGGWCCY	1 cut(s)	513
Psp1406I	AACGTT	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	6 cut(s)	39, 101, 432, 433, 515, 535
PspOMI	GGGCCC	1 cut(s)	430
PspPI	GGNCC	5 cut(s)	100, 430, 431, 513, 820
PspPPI	RGGWCCY	1 cut(s)	513
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PstI	CTGCAG	1 cut(s)	951
PstNI	CAGNNNCTG	2 cut(s)	398, 701
PsuI	RGATCY	2 cut(s)	496, 687
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	2 cut(s)	361, 804
RsaNI	GTAC	2 cut(s)	360, 803
RseI	CAYNNNNRTG	1 cut(s)	654
SatI	GCNGC	3 cut(s)	10, 340, 975
Sau3AI	GATC	4 cut(s)	27, 496, 687, 736
Sau96I	GGNCC	5 cut(s)	100, 430, 431, 513, 820
SchI	GAGTC	2 cut(s)	569, 852
ScrFI	CCNGG	1 cut(s)	818
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	3 cut(s)	616, 658, 822
SfcI	CTRYAG	2 cut(s)	947, 964
SinI	GGWCC	2 cut(s)	513, 820
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	2 cut(s)	13, 107
SmoI	CTYRAG	2 cut(s)	13, 107
SphI	GCATGC	2 cut(s)	784, 974
Sse9I	AATT	4 cut(s)	176, 315, 580, 900
SsiI	CCGC	2 cut(s)	115, 339
SspI	AATATT	2 cut(s)	634, 767
SspMI	CTAG	5 cut(s)	200, 206, 258, 591, 998
StyD4I	CCNGG	1 cut(s)	816
TaaI	ACNGT	4 cut(s)	272, 304, 364, 463
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	3 cut(s)	477, 558, 735
TasI	AATT	4 cut(s)	176, 315, 580, 900
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	395, 416, 587, 826
TscAI	CASTG	5 cut(s)	284, 301, 307, 535, 706
TseFI	GTSAC	2 cut(s)	298, 561
TseI	GCWGC	2 cut(s)	9, 974
Tsp45I	GTSAC	2 cut(s)	298, 561
TspDTI	ATGAA	4 cut(s)	159, 512, 759, 1001
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	5 cut(s)	284, 301, 307, 535, 706
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	513, 820
XapI	RAATTY	1 cut(s)	900
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	4 cut(s)	324, 784, 924, 974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XspI	CTAG	5 cut(s)	200, 206, 258, 591, 998
Zsp2I	ATGCAT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.