Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

58456625 .. 58458617

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAATGAGAGCTTGATCCAAGTGGCACCACCACTATCGTCGGAGACGGCAAGGCAGCGATGGAGGACATTGTGGGGCCTCCTAAAGGGCCGCAAGCCAAGCAAGGAGAAGTTGGGACTCCGTGTTGCAGTGCTGAGTGTATATGCAAACTTCCAATTTTTAGATGCAAACTTCCAATTTTTGGGTGCATACTCCCAATTTTTCAACGAAATAGACAATCTAGTTCCAGGTGGTCAGGACGAGGAACAAACAGAGGAAGCAAATATTCCTAGCAGTGCTATGCCATCAGAATCCGACCATTCTGCAAGTGATTCTGATGGACAGGGCATCATTAGTCAAACTCAAACTGCCGTAGAAATTGGTGTTGACAGCTATGGTTCAGATCGCAACCCCAACAGGTCCCCTTTTAATAGCACTGGTCATGATTCGACTATGGAACAGGGATTACTAACGCCGCCACTTAGCAATGATGGGACAAGGGTATCAGGCAGGATCTTTTCAGCCATTGGTTTAGCCTTTGAGGCGGTATCGTCATTTTTCGATCAGGTATCCACCCCACAGAAGCCTCAATACGCATTGTATGGCATGCTGCTGTCCATCGTGGCCATACTTCTTTGCATCTTGGACGTCATTCACAATGCCCAGATAGAAGCACAAGGAGGACACGCATCTGCGAGTAACATTCCTTGGGGTATCTTGCCCGAAATTTTTGGTTTAGCTCTCGCATGTATTCAATGCATTAGCTCGAAACTGCAGTTTTCATTTCTATGTAGGCATGCTGCTAATCCTGTGAAAATATCGCTTGTGCCTTTCTTAGTGTTCTTCATTTTGTTTGTTTTCAAATATAGAGAAGGAAGGAATAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.62

Weight (kDa)

5.4

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	181
AciI	CCGC	3 cut(s)	91, 455, 524
AclWI	GGATC	2 cut(s)	10, 500
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	627
AfiI	CCNNNNNNNGG	2 cut(s)	85, 181
AgsI	TTSAA	3 cut(s)	205, 734, 841
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	12, 372, 719, 744
AluI	AGCT	4 cut(s)	12, 372, 719, 744
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	10, 500
AoxI	GGCC	3 cut(s)	76, 88, 603
ApeKI	GCWGC	3 cut(s)	55, 589, 779
ApoI	RAATTY	1 cut(s)	705
AspS9I	GGNCC	3 cut(s)	76, 88, 399
AvaII	GGWCC	1 cut(s)	399
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BalI	TGGCCA	1 cut(s)	605
BanI	GGYRCC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BbvI	GCAGC	3 cut(s)	67, 576, 766
BccI	CCATC	5 cut(s)	54, 292, 311, 464, 605
BceAI	ACGGC	2 cut(s)	63, 335
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	221, 270
BfmI	CTRYAG	1 cut(s)	752
BfuI	GTATCC	1 cut(s)	559
BglI	GCCNNNNNGGC	1 cut(s)	521
BisI	GCNGC	5 cut(s)	56, 91, 455, 590, 780
BlsI	GCNGC	5 cut(s)	57, 92, 456, 591, 781
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	3 cut(s)	76, 88, 399
BmiI	GGNNCC	3 cut(s)	27, 77, 401
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	154, 336, 627, 677
BsaHI	GRCGYC	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 181
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	686
BseLI	CCNNNNNNNGG	2 cut(s)	85, 181
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	67, 576, 766
BshFI	GGCC	3 cut(s)	78, 90, 605
BshNI	GGYRCC	1 cut(s)	25
BslFI	GGGAC	3 cut(s)	129, 385, 487
BslI	CCNNNNNNNGG	2 cut(s)	85, 181
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	3 cut(s)	129, 385, 487
BsnI	GGCC	3 cut(s)	78, 90, 605
Bsp143I	GATC	4 cut(s)	15, 382, 492, 541
BspACI	CCGC	3 cut(s)	91, 455, 524
BspANI	GGCC	3 cut(s)	78, 90, 605
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	27, 77, 401
BspMAI	CTGCAG	1 cut(s)	756
BspPI	GGATC	2 cut(s)	10, 500
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	4 cut(s)	15, 382, 492, 541
BssNI	GRCGYC	1 cut(s)	627
BssT1I	CCWWGG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	95, 587, 777
BstDEI	CTNAG	3 cut(s)	134, 461, 814
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstKTI	GATC	4 cut(s)	18, 385, 495, 544
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	4 cut(s)	15, 382, 492, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 521
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	589, 729, 779
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	752
BstV1I	GCAGC	3 cut(s)	67, 576, 766
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	78, 90, 605
BtgZI	GCGATG	1 cut(s)	73
BtsI	GCAGTG	2 cut(s)	135, 280
BtsIMutI	CAGTG	3 cut(s)	135, 280, 414
Cac8I	GCNNGC	3 cut(s)	95, 587, 777
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	76, 88, 399
CviAII	CATG	4 cut(s)	422, 586, 726, 776
DdeI	CTNAG	3 cut(s)	134, 461, 814
DpnI	GATC	4 cut(s)	17, 384, 494, 543
DpnII	GATC	4 cut(s)	15, 382, 492, 541
EaeI	YGGCCR	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO109I	RGGNCCY	2 cut(s)	76, 399
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	686
EcoT22I	ATGCAT	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	686
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	425, 589, 729, 779
FaqI	GGGAC	3 cut(s)	129, 385, 487
FatI	CATG	4 cut(s)	421, 585, 725, 775
Fnu4HI	GCNGC	5 cut(s)	56, 91, 455, 590, 780
Fsp4HI	GCNGC	5 cut(s)	56, 91, 455, 590, 780
FspBI	CTAG	2 cut(s)	221, 270
GluI	GCNGC	5 cut(s)	56, 91, 455, 590, 780
HaeIII	GGCC	3 cut(s)	78, 90, 605
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	425, 589, 729, 779
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	4 cut(s)	117, 290, 311, 425
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	5 cut(s)	43, 289, 295, 316, 382
Hpy188III	TCNNGA	2 cut(s)	236, 422
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	845, 849
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	8 cut(s)	128, 146, 167, 188, 305, 618, 738, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 521
HpyF3I	CTNAG	3 cut(s)	134, 461, 814
HpySE526I	ACGT	1 cut(s)	627
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	4 cut(s)	425, 589, 729, 779
Kzo9I	GATC	4 cut(s)	15, 382, 492, 541
Lsp1109I	GCAGC	3 cut(s)	67, 576, 766
LweI	GCATC	4 cut(s)	154, 336, 627, 677
MaeI	CTAG	2 cut(s)	221, 270
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	4 cut(s)	17, 384, 494, 543
MboI	GATC	4 cut(s)	15, 382, 492, 541
MboII	GAAGA	1 cut(s)	814
MflI	RGATCY	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	5 cut(s)	155, 176, 197, 357, 705
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	2 cut(s)	21, 318
MnlI	CCTC	8 cut(s)	57, 89, 235, 247, 514, 576, 653, 857
Mox20I	TGGCCA	1 cut(s)	605
Mph1103I	ATGCAT	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	99, 521
NdeII	GATC	4 cut(s)	15, 382, 492, 541
NlaIII	CATG	4 cut(s)	425, 589, 729, 779
NlaIV	GGNNCC	3 cut(s)	27, 77, 401
NsiI	ATGCAT	1 cut(s)	740
NspI	RCATGY	3 cut(s)	589, 729, 779
PaeI	GCATGC	2 cut(s)	589, 779
PagI	TCATGA	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	290, 311, 425
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	57, 92, 456, 591, 781
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	27, 77, 401
PspPI	GGNCC	3 cut(s)	76, 88, 399
PspPPI	RGGWCCY	1 cut(s)	399
PsrI	GAACNNNNNNTAC	2 cut(s)	429, 461
PstI	CTGCAG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	766
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	5 cut(s)	56, 91, 455, 590, 780
Sau3AI	GATC	4 cut(s)	15, 382, 492, 541
Sau96I	GGNCC	3 cut(s)	76, 88, 399
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	9 cut(s)	14, 232, 374, 401, 549, 630, 721, 746, 868
SfaNI	GCATC	4 cut(s)	154, 336, 627, 677
SfcI	CTRYAG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	766
SphI	GCATGC	2 cut(s)	589, 779
Sse9I	AATT	5 cut(s)	155, 176, 197, 357, 705
SsiI	CCGC	3 cut(s)	91, 455, 524
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	221, 270
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	686
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	3 cut(s)	428, 540, 746
TasI	AATT	5 cut(s)	155, 176, 197, 357, 705
TauI	GCSGC	2 cut(s)	93, 457
TfiI	GAWTC	3 cut(s)	290, 311, 425
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	3 cut(s)	135, 280, 421
TseI	GCWGC	3 cut(s)	55, 589, 779
TspDTI	ATGAA	3 cut(s)	17, 750, 814
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	3 cut(s)	135, 280, 421
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	3 cut(s)	589, 729, 779
XspI	CTAG	2 cut(s)	221, 270
ZraI	GACGTC	1 cut(s)	628
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.