Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

17164121 .. 17168105

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0179500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCTGGTGACAGAACTGAAGCTGTTACGAGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGGGTGGAAGGGTGCTAATGCAAAATGGGAATAGCTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAATAAGAGAAGTGATGAGGTAAACTTATCAGAGGCTGACAAAGTTCACGATACAAAGATGACATCCAAGCTATTTCCTTTCGGAGTATCTTGTGATCCTTCCGCTGTAATTGTTCAACGAGACATTCAATGCTGTGAGAGGACAACTTCAGAATACACTTCCTCTAGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCTAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAATGGCAAGTTTTCTGTCAATACTTTCGACACAGTCATTGTCAACTTGTGTCCATTTGATCCCACCTTCCTCAACTTTGTTTATTTGATTGGACAAGAAAGGCATCTGGCTATCTCCAGCATGATCCCAATTTCACATGACCTTTGTATCTTCTTAGGCTTGCTTCTTTTTCTAGCTCCTCGCTTAAAAATATGTGATTTTGGGTACTCAAAGGAGGAGCAAAAGCAGTTCATGTACCAACAAAAGTTGAATGCTTGGCTGGAATCACCATTAGGATGGAAGCTTTGGGATCAGAGCACTCAATGGCTGTTACTGATGGTCATATGGGGTAACTTTATATGTGATGTTGATGGGATCATATCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.34

Weight (kDa)

5.83

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	6 cut(s)	314, 478, 563, 628, 807, 872
AcuI	CTGAAG	3 cut(s)	39, 357, 393
AfaI	GTAC	3 cut(s)	34, 716, 746
AgsI	TTSAA	7 cut(s)	57, 224, 341, 353, 396, 430, 760
AluBI	AGCT	6 cut(s)	23, 135, 295, 437, 686, 793
AluI	AGCT	6 cut(s)	23, 135, 295, 437, 686, 793
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	2 cut(s)	339, 451
AlwI	GGATC	6 cut(s)	314, 478, 563, 628, 807, 872
AlwNI	CAGNNNCTG	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	20, 768
BaeI	ACNNNNGTAYC	2 cut(s)	640, 673
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
Bbv12I	GWGCWC	1 cut(s)	809
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	3 cut(s)	780, 820, 854
BcoDI	GTCTC	2 cut(s)	339, 451
BfaI	CTAG	3 cut(s)	390, 434, 683
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmcAI	AGTACT	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	415
BmsI	GCATC	1 cut(s)	622
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	433
BseGI	GGATG	2 cut(s)	287, 791
BseMII	CTCAG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	678, 740
BseXI	GCAGC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	809
BsmAI	GTCTC	2 cut(s)	339, 451
BsmI	GAATGC	2 cut(s)	214, 766
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	415
BspPI	GGATC	6 cut(s)	314, 478, 563, 628, 807, 872
BssMI	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
Bst4CI	ACNGT	2 cut(s)	37, 544
BstC8I	GCNNGC	2 cut(s)	163, 671
BstDEI	CTNAG	2 cut(s)	214, 664
BstF5I	GGATG	2 cut(s)	287, 791
BstKTI	GATC	6 cut(s)	322, 486, 571, 636, 802, 867
BstMAI	GTCTC	2 cut(s)	339, 451
BstMBI	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
BstV1I	GCAGC	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	287, 791
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	163, 671
CaiI	CAGNNNCTG	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	33, 715, 745
CviAII	CATG	6 cut(s)	140, 173, 491, 631, 647, 742
CviQI	GTAC	3 cut(s)	33, 715, 745
DdeI	CTNAG	2 cut(s)	214, 664
DpnI	GATC	6 cut(s)	321, 485, 570, 635, 801, 866
DpnII	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
Eco57I	CTGAAG	3 cut(s)	39, 357, 393
FaeI	CATG	6 cut(s)	143, 176, 494, 634, 650, 745
FatI	CATG	6 cut(s)	139, 172, 490, 630, 646, 741
FauNDI	CATATG	1 cut(s)	833
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	274, 798
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	3 cut(s)	390, 434, 683
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	610
Hin1II	CATG	6 cut(s)	143, 176, 494, 634, 650, 745
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	4 cut(s)	83, 196, 430, 773
HphI	GGTGA	2 cut(s)	20, 768
Hpy166II	GTNNAC	3 cut(s)	247, 271, 553
Hpy188I	TCNGA	8 cut(s)	46, 217, 256, 308, 376, 463, 499, 804
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	3 cut(s)	247, 271, 553
HpyAV	CCTTC	4 cut(s)	94, 102, 333, 586
HpyCH4III	ACNGT	2 cut(s)	37, 544
HpyCH4V	TGCA	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	214, 664
Hsp92II	CATG	6 cut(s)	143, 176, 494, 634, 650, 745
Kzo9I	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
LmnI	GCTCC	2 cut(s)	691, 727
LpnPI	CCDG	5 cut(s)	147, 396, 602, 640, 755
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	390, 434, 683
MaeIII	GTNAC	5 cut(s)	8, 25, 145, 819, 839
MalI	GATC	6 cut(s)	321, 485, 570, 635, 801, 866
MboI	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
MboII	GAAGA	4 cut(s)	33, 82, 399, 652
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	3 cut(s)	333, 457, 639
MlyI	GAGTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	503, 695
MslI	CAYNNNNRTG	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	329
Mva1269I	GAATGC	2 cut(s)	214, 766
NdeI	CATATG	1 cut(s)	833
NdeII	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
NlaIII	CATG	6 cut(s)	143, 176, 494, 634, 650, 745
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	8
PctI	GAATGC	2 cut(s)	214, 766
PfeI	GAWTC	3 cut(s)	196, 430, 773
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	3 cut(s)	34, 716, 746
RsaNI	GTAC	3 cut(s)	33, 715, 745
RseI	CAYNNNNRTG	1 cut(s)	784
SaqAI	TTAA	2 cut(s)	503, 695
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	6 cut(s)	319, 483, 568, 633, 799, 864
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	784
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	333, 457, 639
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	3 cut(s)	390, 434, 683
TaaI	ACNGT	2 cut(s)	37, 544
TaqI	TCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	333, 457, 639
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	196, 430, 773
Tru1I	TTAA	2 cut(s)	503, 695
Tru9I	TTAA	2 cut(s)	503, 695
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	128, 730
TspRI	CASTG	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	542
XspI	CTAG	3 cut(s)	390, 434, 683
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.