Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

35041478 .. 35043409

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG266200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATAGCAATTTGGGAATAGATGGTTTAGATCTAGATAGTCAGGACAAGGAACAAACAGAGAGAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTATCACCAGTGTGATCAATTGGTCACTGTCCCTGTGGATGTTACTATGACATGCCCTCTTTGCCAAGGCTGCTTTACGGAAGAATGTAGTGGTGCCATGCCGTCGGAGTCAGAACCTTCTGCAAGGGACTCTGATGGGCATGGTGCCATGGTAATCCCTTCTTCCAATCAAACAGTCCTGGACATTGTCGAGAACAACAATGGTTCAGCACCAAACCATGATTACGACAACTATGGCGAGACACACCAGGCACCAGTAATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.34

Weight (kDa)

4.05

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccB1I	GGYRCC	3 cut(s)	194, 245, 352
AjnI	CCWGG	2 cut(s)	279, 348
AleI	CACNNNNGTG	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	90, 171
AsuHPI	GGTGA	1 cut(s)	98
BanI	GGYRCC	3 cut(s)	194, 245, 352
BbvI	GCAGC	2 cut(s)	102, 158
BccI	CCATC	2 cut(s)	17, 230
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	281, 350
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	84
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	2 cut(s)	91, 172
BlsI	GCNGC	2 cut(s)	92, 173
Bme1390I	CCNGG	2 cut(s)	281, 350
BmiI	GGNNCC	3 cut(s)	196, 247, 354
BmrFI	CCNGG	2 cut(s)	281, 350
BsaJI	CCNNGG	2 cut(s)	166, 249
Bse1I	ACTGG	2 cut(s)	109, 356
BseBI	CCWGG	2 cut(s)	281, 350
BseDI	CCNNGG	2 cut(s)	166, 249
BseGI	GGATG	1 cut(s)	145
BseNI	ACTGG	2 cut(s)	109, 356
BseXI	GCAGC	2 cut(s)	102, 158
BshNI	GGYRCC	3 cut(s)	194, 245, 352
BslFI	GGGAC	2 cut(s)	116, 242
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	116, 242
Bsp143I	GATC	2 cut(s)	31, 115
Bsp19I	CCATGG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	196, 247, 354
BspMI	ACCTGC	1 cut(s)	84
BspT107I	GGYRCC	3 cut(s)	194, 245, 352
BsrI	ACTGG	2 cut(s)	109, 356
BssECI	CCNNGG	2 cut(s)	166, 249
BssMI	GATC	2 cut(s)	31, 115
BssT1I	CCWWGG	2 cut(s)	166, 249
Bst2UI	CCWGG	2 cut(s)	281, 350
Bst4CI	ACNGT	2 cut(s)	130, 277
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	34, 118
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	31, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 171
BstNI	CCWGG	2 cut(s)	281, 350
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	279, 348
BstV1I	GCAGC	2 cut(s)	102, 158
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	116, 126
BveI	ACCTGC	1 cut(s)	84
CviAII	CATG	5 cut(s)	153, 199, 242, 250, 320
CviJI	RGCY	1 cut(s)	171
CviKI_1	RGCY	1 cut(s)	171
DpnI	GATC	2 cut(s)	33, 117
DpnII	GATC	2 cut(s)	31, 115
Eco130I	CCWWGG	2 cut(s)	166, 249
EcoRII	CCWGG	2 cut(s)	279, 348
EcoT14I	CCWWGG	2 cut(s)	166, 249
ErhI	CCWWGG	2 cut(s)	166, 249
FaeI	CATG	5 cut(s)	156, 202, 245, 253, 323
FaiI	YATR	7 cut(s)	149, 154, 200, 243, 251, 321, 336
FaqI	GGGAC	2 cut(s)	116, 242
FatI	CATG	5 cut(s)	152, 198, 241, 249, 319
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	91, 172
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	91, 172
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	91, 172
Hin1II	CATG	5 cut(s)	156, 202, 245, 253, 323
HinfI	GANTC	2 cut(s)	209, 230
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	208, 214, 235
Hpy188III	TCNNGA	3 cut(s)	35, 44, 292
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	228, 270
HpyCH4III	ACNGT	2 cut(s)	130, 277
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 171
Hsp92II	CATG	5 cut(s)	156, 202, 245, 253, 323
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	31, 115
LpnPI	CCDG	8 cut(s)	29, 79, 122, 147, 266, 293, 335, 362
Lsp1109I	GCAGC	2 cut(s)	102, 158
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	124, 142
MalI	GATC	2 cut(s)	33, 117
MboI	GATC	2 cut(s)	31, 115
MboII	GAAGA	2 cut(s)	194, 255
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	2 cut(s)	10, 119
MlyI	GAGTC	2 cut(s)	218, 224
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	2 cut(s)	64, 168
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	281, 350
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	281, 350
MwoI	GCNNNNNNNGC	2 cut(s)	162, 171
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	2 cut(s)	31, 115
NlaIII	CATG	5 cut(s)	156, 202, 245, 253, 323
NlaIV	GGNNCC	3 cut(s)	196, 247, 354
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	92, 173
PleI	GAGTC	2 cut(s)	217, 224
PpsI	GAGTC	2 cut(s)	217, 224
Psp6I	CCWGG	2 cut(s)	279, 348
PspGI	CCWGG	2 cut(s)	279, 348
PspN4I	GGNNCC	3 cut(s)	196, 247, 354
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	111
SatI	GCNGC	2 cut(s)	91, 172
Sau3AI	GATC	2 cut(s)	31, 115
SchI	GAGTC	2 cut(s)	218, 224
ScrFI	CCNGG	2 cut(s)	281, 350
SetI	ASST	2 cut(s)	98, 220
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	10, 119
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	279, 348
StyI	CCWWGG	2 cut(s)	166, 249
TaaI	ACNGT	2 cut(s)	130, 277
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	10, 119
TscAI	CASTG	2 cut(s)	116, 133
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	90, 171
Tsp45I	GTSAC	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	116, 133
Tth111I	GACNNNGTC	1 cut(s)	287
XbaI	TCTAGA	1 cut(s)	34
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.