Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

34193833 .. 34195395

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAACGAAAAGTTCTGCGTTGCAATCTTGCGCTCACAAGCTGCATTCAGATCTATCAAGGGCATAGATGGTTTAGATCTAGATAGTCAGCACAAGGAACAGACAGAGAGAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCACCAGTGTGATCAACTGATCACTGTCCTTGTGGATGTCACTATGACATGCCCTCTTTGCCAAGACTGCTTTATGGAAGAATGTAGTGGTGCCATGCCGTCGGAGTCGGAGCCTTCTGCAAGGGACTCTGATGGGCGTGGTGCCATGGTAATCCCTTCTTCCAATCAAACGGTCCTGAACATTGTCGAGAACAACAATGGTTCAGCGCCAAACAGATCCCCTTTTCATAGCCTCGGTTCCCATGATTACGACAACTATGGCGAGACACACCAGGCAGCAGGGCATGATGATTCCAACCTGAAAACCAGCAATACCGTTAGCGTGCCAGGCCATGTGGTCCCTTATGTTTCAAGTTCCAATATTGGGTCGCTTCCACTTAACCTTGTTGCGAATGTTGGCCCTGACCAGCCACATCATGGGACAAGGATTACTTCATCCGTCTGGATCTTTTCAGCCACTGGTTTCGGCTTTGAGGCTGTTTCGGCATTTTTTGATCAGGTTTCCACCCCACGGAAGACTCGTTATGCATTATATGGCATGCTTTTGTCTATTGTGGCTGTACTTGTTTGCATCTTGGACCTCATTCTCAATGCCATGAAACAAAGAAGAATCACGTCTGAGAGTAACAGACTTTTTTCGGGTATCTTACCAGAAGTTTTTGGATTAACTCTCGCCTTTATTCAGTGCATTAGCTCGGCACTGCAGTATTCATTTCTCTGCAGGCATGCTGCTAATCCTTTGAAAGTATCCCTCGTGCCTTTCTTATTTTTCTTCGTCTTGTATGCTTTCAAATATAGAAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.21

Weight (kDa)

6.05

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccB1I	GGYRCC	2 cut(s)	239, 290
AccB7I	CCANNNNNTGG	1 cut(s)	566
AclWI	GGATC	2 cut(s)	360, 602
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	3 cut(s)	513, 566, 660
AgsI	TTSAA	3 cut(s)	501, 892, 940
AjiI	CACGTC	1 cut(s)	765
AjnI	CCWGG	2 cut(s)	420, 475
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	41, 843
AluI	AGCT	2 cut(s)	41, 843
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	360, 602
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	2 cut(s)	478, 547
ApeKI	GCWGC	4 cut(s)	41, 135, 425, 878
AspLEI	GCGC	2 cut(s)	33, 358
AspS9I	GGNCC	4 cut(s)	322, 487, 548, 727
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	322, 487, 727
BanI	GGYRCC	2 cut(s)	239, 290
BauI	CACGAG	1 cut(s)	902
BbsI	GAAGAC	1 cut(s)	671
BbvI	GCAGC	4 cut(s)	28, 147, 437, 865
BccI	CCATC	2 cut(s)	62, 275
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	422, 477
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	3 cut(s)	160, 168, 643
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	851, 868
BfoI	RGCGCY	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	907
BglII	AGATCT	2 cut(s)	50, 76
BisI	GCNGC	4 cut(s)	42, 136, 426, 879
BlsI	GCNGC	4 cut(s)	43, 137, 427, 880
Bme1390I	CCNGG	2 cut(s)	422, 477
Bme18I	GGWCC	3 cut(s)	322, 487, 727
BmgBI	CACGTC	1 cut(s)	765
BmgT120I	GGNCC	4 cut(s)	322, 487, 548, 727
BmiI	GGNNCC	5 cut(s)	241, 261, 292, 388, 489
BmrFI	CCNGG	2 cut(s)	422, 477
BmsI	GCATC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	671
BsaJI	CCNNGG	3 cut(s)	294, 382, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	513, 566, 660
Bse1I	ACTGG	2 cut(s)	154, 613
BseBI	CCWGG	2 cut(s)	422, 477
BseDI	CCNNGG	3 cut(s)	294, 382, 659
BseGI	GGATG	2 cut(s)	190, 584
BseLI	CCNNNNNNNGG	3 cut(s)	513, 566, 660
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	2 cut(s)	154, 613
BseXI	GCAGC	4 cut(s)	28, 147, 437, 865
BshFI	GGCC	2 cut(s)	480, 549
BshNI	GGYRCC	2 cut(s)	239, 290
BslFI	GGGAC	3 cut(s)	287, 473, 583
BslI	CCNNNNNNNGG	3 cut(s)	513, 566, 660
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	3 cut(s)	287, 473, 583
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	480, 549
Bsp143I	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	2 cut(s)	480, 549
BspCNI	CTCAG	1 cut(s)	760
BspLI	GGNNCC	5 cut(s)	241, 261, 292, 388, 489
BspMAI	CTGCAG	2 cut(s)	855, 872
BspMI	ACCTGC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	360, 602
BspT107I	GGYRCC	2 cut(s)	239, 290
BsrI	ACTGG	2 cut(s)	154, 613
BssECI	CCNNGG	3 cut(s)	294, 382, 659
BssMI	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
BssSI	CACGAG	1 cut(s)	902
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	422, 477
Bst4CI	ACNGT	4 cut(s)	149, 175, 322, 466
BstC8I	GCNNGC	4 cut(s)	473, 689, 872, 876
BstDEI	CTNAG	1 cut(s)	768
BstDSI	CCRYGG	2 cut(s)	294, 659
BstF5I	GGATG	2 cut(s)	190, 584
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	33, 358
BstKTI	GATC	7 cut(s)	53, 79, 163, 171, 368, 597, 646
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 216, 477, 632
BstNI	CCWGG	2 cut(s)	422, 477
BstNSI	RCATGY	3 cut(s)	201, 691, 878
BstSCI	CCNGG	2 cut(s)	420, 475
BstSFI	CTRYAG	2 cut(s)	851, 868
BstV1I	GCAGC	4 cut(s)	28, 147, 437, 865
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	4 cut(s)	50, 76, 365, 594
BstYI	RGATCY	4 cut(s)	50, 76, 365, 594
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	2 cut(s)	480, 549
BtgI	CCRYGG	2 cut(s)	294, 659
BtrI	CACGTC	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	190, 584
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	5 cut(s)	161, 171, 606, 839, 848
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	4 cut(s)	473, 689, 872, 876
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	2 cut(s)	33, 358
Cfr13I	GGNCC	4 cut(s)	322, 487, 548, 727
Csp6I	GTAC	1 cut(s)	710
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	7 cut(s)	52, 78, 162, 170, 367, 596, 645
DpnII	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	3 cut(s)	322, 487, 727
EcoRII	CCWGG	2 cut(s)	420, 475
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	294
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	3 cut(s)	287, 473, 583
FbaI	TGATCA	3 cut(s)	160, 168, 643
Fnu4HI	GCNGC	4 cut(s)	42, 136, 426, 879
FokI	GGATG	2 cut(s)	197, 571
Fsp4HI	GCNGC	4 cut(s)	42, 136, 426, 879
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	2 cut(s)	32, 357
GluI	GCNGC	4 cut(s)	42, 136, 426, 879
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	480, 549
HhaI	GCGC	2 cut(s)	33, 358
Hin6I	GCGC	2 cut(s)	31, 356
HinP1I	GCGC	2 cut(s)	31, 356
HinfI	GANTC	5 cut(s)	254, 275, 440, 667, 759
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	5 cut(s)	50, 253, 259, 280, 769
Hpy188III	TCNNGA	4 cut(s)	80, 325, 337, 592
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	273, 315, 948
HpyCH4III	ACNGT	4 cut(s)	149, 175, 322, 466
HpyCH4IV	ACGT	1 cut(s)	764
HpyCH4V	TGCA	8 cut(s)	23, 44, 269, 677, 720, 837, 853, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 216, 477, 632
HpyF3I	CTNAG	1 cut(s)	768
HpySE526I	ACGT	1 cut(s)	764
HspAI	GCGC	2 cut(s)	31, 356
Ksp22I	TGATCA	3 cut(s)	160, 168, 643
Kzo9I	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	4 cut(s)	28, 147, 437, 865
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	764
MaeIII	GTNAC	3 cut(s)	149, 187, 773
MalI	GATC	7 cut(s)	52, 78, 162, 170, 367, 596, 645
MboI	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
MboII	GAAGA	5 cut(s)	239, 300, 676, 768, 913
MflI	RGATCY	4 cut(s)	50, 76, 365, 594
MluCI	AATT	1 cut(s)	958
MlyI	GAGTC	3 cut(s)	263, 269, 661
MmeI	TCCRAC	3 cut(s)	231, 237, 468
MnlI	CCTC	6 cut(s)	109, 213, 392, 616, 740, 911
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	2 cut(s)	528, 815
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	422, 477
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	2 cut(s)	422, 477
MwoI	GCNNNNNNNGC	4 cut(s)	207, 216, 477, 632
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
NlaIV	GGNNCC	5 cut(s)	241, 261, 292, 388, 489
NmeAIII	GCCGAG	1 cut(s)	824
NmuCI	GTSAC	2 cut(s)	149, 187
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	3 cut(s)	201, 691, 878
OliI	CACNNNNGTG	1 cut(s)	156
PaeI	GCATGC	2 cut(s)	691, 878
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	440, 759
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	4 cut(s)	43, 137, 427, 880
PleI	GAGTC	3 cut(s)	262, 269, 661
PpsI	GAGTC	3 cut(s)	262, 269, 661
Psp6I	CCWGG	2 cut(s)	420, 475
PspGI	CCWGG	2 cut(s)	420, 475
PspN4I	GGNNCC	5 cut(s)	241, 261, 292, 388, 489
PspPI	GGNCC	4 cut(s)	322, 487, 548, 727
PstI	CTGCAG	2 cut(s)	855, 872
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	4 cut(s)	50, 76, 365, 594
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	528, 815
SatI	GCNGC	4 cut(s)	42, 136, 426, 879
Sau3AI	GATC	7 cut(s)	50, 76, 160, 168, 365, 594, 643
Sau96I	GGNCC	4 cut(s)	322, 487, 548, 727
SchI	GAGTC	3 cut(s)	263, 269, 661
ScrFI	CCNGG	2 cut(s)	422, 477
SetI	ASST	8 cut(s)	43, 143, 450, 534, 651, 732, 767, 845
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	2 cut(s)	851, 868
SinI	GGWCC	3 cut(s)	322, 487, 727
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	2 cut(s)	691, 878
Sse9I	AATT	1 cut(s)	958
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	420, 475
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	149, 175, 322, 466
TaiI	ACGT	1 cut(s)	767
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	958
TatI	WGTACW	1 cut(s)	709
TfiI	GAWTC	2 cut(s)	440, 759
Tru1I	TTAA	2 cut(s)	528, 815
Tru9I	TTAA	2 cut(s)	528, 815
TscAI	CASTG	5 cut(s)	161, 178, 613, 839, 855
TseFI	GTSAC	2 cut(s)	149, 187
TseI	GCWGC	4 cut(s)	41, 135, 425, 878
Tsp45I	GTSAC	2 cut(s)	149, 187
TspDTI	ATGAA	5 cut(s)	17, 365, 573, 761, 849
TspGWI	ACGGA	2 cut(s)	577, 676
TspRI	CASTG	5 cut(s)	161, 178, 613, 839, 855
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	3 cut(s)	322, 487, 727
XbaI	TCTAGA	1 cut(s)	79
XceI	RCATGY	3 cut(s)	201, 691, 878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.