Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

35366133 .. 35368567

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGAGCGTTTTGGGTGAAAGACTGATTGGAGAGCATCCCATGGCAACCCAGGAATTGTTCCGCACCGTCCACTTTGCAATCTTGACCTTATATGCTGCATGGCAATTTAGGAAAGGATTAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCAGCAGTGTGATCAACTGGTCACCGTCCCTTTGGATGTCAATATGGCATACCCTCTTTGCCAAGGCTGTTTTATGGGAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACGCTGATAGGAATGAACCCATGGTAATCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGGTTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGAACAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTCCCTTATGTTTCAAGTTCCAATAGTGGGTCGCATCCACGTAACCTTGTTGCGAATGTTGGCACTGACCAGCCACATCATGGGACAAGGGTTACTTCATCGGTCTGGATCTTTTCAGCCATTGGTTTCGGATTTGAGGCTGTTTCGGCATTTTTTGATCAAGTTTCCACCCCACAGAAGCCTCACTATGCATTATATGGCATGCTGTTGTCTTTCGTGGCTGTACTAGTTTGCATATTGGACCTCATTCTCAATGCCAGGAAACAAAGCACACCTGAGAATAACATACTTTGGAATATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTGTTCAGTTCAGTAGCTCGGCACTGCAGTTTTCATTTCTCTGCAGGCACGCTGCTAATCCTGTGAAAGTATCCGTTGTGCCTTTCTTATTTTTCTTCGTCTTGTTTGCTTTCAAATGTAGAAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.69

Weight (kDa)

5.93

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	2 cut(s)	64, 486
AclWI	GGATC	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	921
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	1 cut(s)	819
AfiI	CCNNNNNNNGG	3 cut(s)	502, 621, 674
AgsI	TTSAA	2 cut(s)	609, 1039
AhlI	ACTAGT	1 cut(s)	820
AjnI	CCWGG	4 cut(s)	51, 495, 583, 851
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	3 cut(s)	303, 917, 942
AluI	AGCT	3 cut(s)	303, 917, 942
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	3 cut(s)	98, 192, 977
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	835
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	29, 220, 559
AvaII	GGWCC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	85, 204, 964
BccI	CCATC	2 cut(s)	119, 542
BciT130I	CCWGG	4 cut(s)	53, 497, 585, 853
BciVI	GTATCC	1 cut(s)	1006
BclI	TGATCA	3 cut(s)	217, 556, 751
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	158
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	3 cut(s)	137, 525, 821
BfmI	CTRYAG	2 cut(s)	950, 967
BfoI	RGCGCY	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	1006
BisI	GCNGC	4 cut(s)	99, 193, 487, 978
BlsI	GCNGC	4 cut(s)	100, 194, 488, 979
Bme1390I	CCNGG	5 cut(s)	53, 401, 497, 585, 853
Bme18I	GGWCC	1 cut(s)	835
BmgT120I	GGNCC	1 cut(s)	835
BmiI	GGNNCC	2 cut(s)	463, 501
BmrFI	CCNGG	5 cut(s)	53, 401, 497, 585, 853
BmsI	GCATC	2 cut(s)	46, 637
BpuMI	CCSGG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	5 cut(s)	42, 51, 268, 369, 457
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 621, 674
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	4 cut(s)	53, 497, 585, 853
BseDI	CCNNGG	5 cut(s)	42, 51, 268, 369, 457
BseGI	GGATG	3 cut(s)	37, 247, 628
BseLI	CCNNNNNNNGG	3 cut(s)	502, 621, 674
BseMII	CTCAG	1 cut(s)	861
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	85, 204, 964
BshFI	GGCC	1 cut(s)	588
BshNI	GGYRCC	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	401, 503
BslFI	GGGAC	4 cut(s)	218, 383, 581, 691
BslI	CCNNNNNNNGG	3 cut(s)	502, 621, 674
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	4 cut(s)	218, 383, 581, 691
BsnI	GGCC	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	217, 556, 702, 751
Bsp19I	CCATGG	2 cut(s)	42, 369
BspACI	CCGC	2 cut(s)	64, 486
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	1 cut(s)	862
BspLI	GGNNCC	2 cut(s)	463, 501
BspMAI	CTGCAG	2 cut(s)	954, 971
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	5 cut(s)	42, 51, 268, 369, 457
BssMI	GATC	4 cut(s)	217, 556, 702, 751
BssNI	GRCGYC	1 cut(s)	500
BssT1I	CCWWGG	4 cut(s)	42, 268, 369, 457
Bst2UI	CCWGG	4 cut(s)	53, 497, 585, 853
Bst4CI	ACNGT	5 cut(s)	70, 143, 206, 232, 397
BstACI	GRCGYC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	5 cut(s)	504, 581, 797, 971, 975
BstDEI	CTNAG	1 cut(s)	870
BstDSI	CCRYGG	2 cut(s)	42, 369
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	37, 247, 628
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	4 cut(s)	220, 559, 705, 754
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	217, 556, 702, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	350, 483, 585, 740
BstNI	CCWGG	4 cut(s)	53, 497, 585, 853
BstNSI	RCATGY	2 cut(s)	322, 799
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	5 cut(s)	51, 399, 495, 583, 851
BstSFI	CTRYAG	2 cut(s)	950, 967
BstV1I	GCAGC	3 cut(s)	85, 204, 964
BstX2I	RGATCY	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	1006
BsuRI	GGCC	1 cut(s)	588
BtgI	CCRYGG	2 cut(s)	42, 369
BtsCI	GGATG	3 cut(s)	37, 247, 628
BtsI	GCAGTG	2 cut(s)	218, 947
BtsIMutI	CAGTG	3 cut(s)	218, 657, 947
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	5 cut(s)	504, 581, 797, 971, 975
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	835
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	818
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	1 cut(s)	870
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	4 cut(s)	219, 558, 704, 753
DpnII	GATC	4 cut(s)	217, 556, 702, 751
DraI	TTTAAA	1 cut(s)	132
Eco130I	CCWWGG	4 cut(s)	42, 268, 369, 457
Eco47I	GGWCC	1 cut(s)	835
Eco57I	CTGAAG	1 cut(s)	921
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	4 cut(s)	51, 495, 583, 851
EcoT14I	CCWWGG	4 cut(s)	42, 268, 369, 457
EcoT22I	ATGCAT	1 cut(s)	787
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
ErhI	CCWWGG	4 cut(s)	42, 268, 369, 457
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	4 cut(s)	218, 383, 581, 691
FbaI	TGATCA	3 cut(s)	217, 556, 751
Fnu4HI	GCNGC	4 cut(s)	99, 193, 487, 978
FokI	GGATG	3 cut(s)	24, 254, 615
Fsp4HI	GCNGC	4 cut(s)	99, 193, 487, 978
FspBI	CTAG	3 cut(s)	137, 525, 821
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	4 cut(s)	99, 193, 487, 978
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	2 cut(s)	401, 503
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	329, 515
HpaII	CCGG	2 cut(s)	401, 503
HphI	GGTGA	3 cut(s)	29, 220, 559
Hpy166II	GTNNAC	2 cut(s)	73, 412
Hpy188I	TCNGA	4 cut(s)	328, 334, 556, 725
Hpy188III	TCNNGA	4 cut(s)	85, 137, 146, 700
Hpy8I	GTNNAC	2 cut(s)	73, 412
HpyAV	CCTTC	3 cut(s)	348, 393, 1047
HpyCH4III	ACNGT	5 cut(s)	70, 143, 206, 232, 397
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	9 cut(s)	80, 101, 310, 344, 593, 785, 828, 952, 969
HpyF10VI	GCNNNNNNNGC	4 cut(s)	350, 483, 585, 740
HpyF3I	CTNAG	1 cut(s)	870
HpySE526I	ACGT	1 cut(s)	634
Hsp92I	GRCGYC	1 cut(s)	500
HspAI	GCGC	1 cut(s)	500
KasI	GGCGCC	1 cut(s)	499
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Ksp22I	TGATCA	3 cut(s)	217, 556, 751
Kzo9I	GATC	4 cut(s)	217, 556, 702, 751
Lsp1109I	GCAGC	3 cut(s)	85, 204, 964
LweI	GCATC	2 cut(s)	46, 637
MaeI	CTAG	3 cut(s)	137, 525, 821
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	5 cut(s)	226, 347, 565, 635, 685
MalI	GATC	4 cut(s)	219, 558, 704, 753
MboI	GATC	4 cut(s)	217, 556, 702, 751
MboII	GAAGA	1 cut(s)	1012
MflI	RGATCY	1 cut(s)	702
MluCI	AATT	3 cut(s)	56, 107, 1057
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	3 cut(s)	306, 416, 543
MnlI	CCTC	7 cut(s)	166, 270, 324, 390, 724, 786, 848
Mph1103I	ATGCAT	1 cut(s)	787
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	2 cut(s)	401, 503
MspR9I	CCNGG	5 cut(s)	53, 401, 497, 585, 853
MvaI	CCWGG	4 cut(s)	53, 497, 585, 853
MwoI	GCNNNNNNNGC	4 cut(s)	350, 483, 585, 740
NaeI	GCCGGC	1 cut(s)	504
NarI	GGCGCC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	2 cut(s)	42, 369
NdeII	GATC	4 cut(s)	217, 556, 702, 751
NgoMIV	GCCGGC	1 cut(s)	502
NlaIV	GGNNCC	2 cut(s)	463, 501
NmeAIII	GCCGAG	1 cut(s)	923
NmuCI	GTSAC	3 cut(s)	226, 347, 565
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	2 cut(s)	322, 799
PaeI	GCATGC	1 cut(s)	799
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	100, 194, 488, 979
PleI	GAGTC	1 cut(s)	337
PluTI	GGCGCC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	635
Psp6I	CCWGG	4 cut(s)	51, 495, 583, 851
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	4 cut(s)	51, 495, 583, 851
PspN4I	GGNNCC	2 cut(s)	463, 501
PspPI	GGNCC	1 cut(s)	835
PstI	CTGCAG	2 cut(s)	954, 971
PsuI	RGATCY	1 cut(s)	702
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	4 cut(s)	99, 193, 487, 978
Sau3AI	GATC	4 cut(s)	217, 556, 702, 751
Sau96I	GGNCC	1 cut(s)	835
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	5 cut(s)	53, 401, 497, 585, 853
SfaNI	GCATC	2 cut(s)	46, 637
SfcI	CTRYAG	2 cut(s)	950, 967
SfoI	GGCGCC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	835
SmiMI	CAYNNNNRTG	1 cut(s)	294
SpeI	ACTAGT	1 cut(s)	820
SphI	GCATGC	1 cut(s)	799
Sse9I	AATT	3 cut(s)	56, 107, 1057
SsiI	CCGC	2 cut(s)	64, 486
SspDI	GGCGCC	1 cut(s)	499
SspMI	CTAG	3 cut(s)	137, 525, 821
StyD4I	CCNGG	5 cut(s)	51, 399, 495, 583, 851
StyI	CCWWGG	4 cut(s)	42, 268, 369, 457
TaaI	ACNGT	5 cut(s)	70, 143, 206, 232, 397
TaiI	ACGT	1 cut(s)	637
TaqII	GACCGA	2 cut(s)	519, 685
TasI	AATT	3 cut(s)	56, 107, 1057
TatI	WGTACW	1 cut(s)	817
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	3 cut(s)	218, 664, 954
TseFI	GTSAC	3 cut(s)	226, 347, 565
TseI	GCWGC	3 cut(s)	98, 192, 977
Tsp45I	GTSAC	3 cut(s)	226, 347, 565
TspDTI	ATGAA	3 cut(s)	378, 681, 948
TspGWI	ACGGA	1 cut(s)	988
TspRI	CASTG	3 cut(s)	218, 664, 954
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	835
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	2 cut(s)	322, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XspI	CTAG	3 cut(s)	137, 525, 821
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.