Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

17060956 .. 17064322

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGTTAATGTGATGATCATGTTTGCTGGTTTTCAAGAACATCAGGAGAAAGAAAAGTATCTTCTGATCATCAACCATGGTTTTAGGTTTGATCAACTCTTAATTTTCTTCCTGATCATTCTTTCAAGCTTGTGGAATTGTCATGTTGCTGCTGCAGCAGACAATATTGGGGACAGACTCAAAATAGGCGACACTCTCAATTCCTCAAGCGCTTTAGTTTCCACCACTGGGAAGTTCACTTTGCTTTTCTTGCCCCTCAGTTCAAGTTCCAACTACAGCTATCTATATATTAGGCGGTACAATGTAAGTGGTGCGAATAAGGCTTGGGTTGGCAACCGAGACTCGCCTGTTTTATACCCTTTTGGAGTTCTTACCTTGGACTCCAACAACACATTAAAAATCATTACAGACAACGAAGGTGGCGGTGGCGATCCTCCTATAGTGCTTGGCTCCGCACCAAAAAGTAGTAGTAATGTTGCGGCTACTCTGTCAGATTCTGGCAATTTTATCCTACAAGAGTTGAACTCCGATGGATCAACGAAGCAGGTGTGGTGGCAAAGTTTTGATTATCCAGCAGATACCTTTTTACCAGGCATGAAGTTAGGTGTCAACCGTAGCAATGGGCACATTTGGTCTCTTACATCATGGACATCCGTTAACTACCCACCGCCGGGGCCTTTCATCCTAGATTGGGACCCAACTGCCCGCCAATTGGAAATTCGGAGAGAAGGGGTGGTTTATTGGAGAAGCGGAAACTATAGTGCTACAAACAACAGATTCCAAAACATTTTGCCGAATGCAAAGGTTAGCTACAAGTTTAGCATTGTTTCAAATGAGAATGAAGACTACCTCACTTACACTTCTGAAGATGGTCCATATGAGTTACCAGAATGGATTCTAAATTATTATGGGAAGCTTTTTAATTATTATGGATCGGGAATTGATATTGCACGAGCAGATCAGTGTGGAGGCTACAACACAGATGGAGTAGGGTGCCAGACAACTAGCCGGCCAACCACTTGTATGGCAGATGTCGGCAGTCCATTTCGGCTAAAAAAAGGTTCCTTTAAACCAATCACCTCGAGTTCAACTTCAAGATGCCCATACTCGCTCAACTTTGTATCAAATGGAAGTCACAGTGGTACTAGTATTAACTGTAACAATACTTGTTTGCAAGACTGTGACTGCCTTGGATTCGACTTTCTATTTGATAATCAGACAGGATGCCGATTTTGGAGTGTGGACTGTGAGTTCGTTGAAGACCGCACTCAACCTGGTAATGCAAGCAATTTGGTTTTGACAAAGCTAATGCCAACAACAAAATCACCACCGCCAAAGTCACCACCAAGCAAAAGTGGTGCAACGCATAAATGGATTTGGATTGGGGTTGCTATTAGTGCTGCTCTAGTGATAATGGCCTTTTCCATCTTGTGCTATCTACGAAGAAGAGGAAGAAAATCTAAACTTTCAGGTGAGGGTGAGATCGACCAGAATCAATTGCTTAACTTCAGGAATCCTAGGAGGCCTACTGATTTGAATGGACTTCAAAATGATGGAAAGATGGGACATGACTTGAGCGTATTTAGCTATGCATCTGTAATGGCTGCCACAATCAACTTCGCTGAAGAAAACAAGCTTGGAGAAGGGGGCTTTGGACCTGTTTATAAGGGAAAATTGGCAACGGGACAAGAAGTAGCTGTGAAGAGGCTTTCAAAATGTTCAGGGCAAGGAACACTAGAGTTTAAGAATGAATTGATCCTCATACATGAACTTCAACATACAAACCTTGTCCAGCTTTTTGGATTCTGCATTCACGGTGAAGAGAGGATGTTGATATATGAGTACATGCCAAACAAAAGTCTGGACTACCTTTTATTTGATTCAATCAGAGGTGTTTTTCTAGATTGGAGCAAGCGTTTCAGCATAATTGAAGGAATCGCTCAAGGATTGCTTTATTTGCACAAATTCTCAAGAACAAGAGTAATTCATAGAGATCTAAAAGCTAGTAACGTACTACTTGATGAAAATATGAACCCCAAAATTTCAGATTTTGGTATGGCAAGGATTTTCTCCATTAATGACCTGGAAGCAAATACTAGTAGGATTGTTGGGACACGTGGTTACATGCCTCCTGAGTATGCAATGGAAGGAATTTTCTCTACAAAATCCGATGTCTACAGTTTTGGAGTGTTAGTGCTTGAAATCATAAGTGGTAGGAGAAACAATAGCTTCTACAATGATGATCGTGCCATCAATTTAGTAGGATATGCATGGGAGTTGTGGAAAGAAGGCGCAGGGCTACAACTAATGGATCCAACACTAGCTGATTCGTCTACTAACGAAGATCAACTGTTAAGATGCGTTCAAGTTGGTCTTCTATGCGTGGAGGATAGTGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGCGTTGACAAATGAAAGCTCACGATTACCTGCACCTACAAAGCCAGCATTTTCTACAGATAGGCATGCGGTCACCAGTAGTATAGTTGAAAAGGAGCCACAAATTTTATCTGTAAATGATCTGACCATTTCTGATTGTGATGGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

859

Amino Acids

95.47

Weight (kDa)

5.99

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	109 - 216	3.1e-23	D-mannose binding lectin
Pkinase	PF00069	541 - 743	5.5e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	543 - 743	4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1665
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	2 cut(s)	535, 2467
AccB1I	GGYRCC	1 cut(s)	993
AccI	GTMKAC	2 cut(s)	2175, 2333
AccII	CGCG	1 cut(s)	2432
AclWI	GGATC	6 cut(s)	425, 541, 940, 1750, 2306, 2319
AcoI	YGGCCR	1 cut(s)	1010
AcsI	RAATTY	5 cut(s)	717, 1964, 2040, 2151, 2532
AcuI	CTGAAG	3 cut(s)	885, 1492, 1644
AcvI	CACGTG	1 cut(s)	2117
AfaI	GTAC	4 cut(s)	299, 1144, 1844, 2013
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	5 cut(s)	228, 670, 671, 691, 712
AflIII	ACRYGT	1 cut(s)	2114
AhlI	ACTAGT	2 cut(s)	1145, 2096
AjnI	CCWGG	3 cut(s)	589, 1273, 2082
AjuI	GAANNNNNNNTTGG	6 cut(s)	702, 734, 1620, 1635, 1652, 1667
AloI	GAACNNNNNNTCC	2 cut(s)	1235, 1267
Alw21I	GWGCWC	1 cut(s)	2427
Alw26I	GTCTC	2 cut(s)	333, 639
AlwI	GGATC	6 cut(s)	425, 541, 940, 1750, 2306, 2319
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	1081
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	4 cut(s)	674, 1010, 1416, 1523
ApeKI	GCWGC	6 cut(s)	149, 152, 155, 1400, 1604, 2396
ApoI	RAATTY	5 cut(s)	717, 1964, 2040, 2151, 2532
ArsI	GACNNNNNNTTYG	4 cut(s)	1190, 1222, 1235, 1267
AseI	ATTAAT	1 cut(s)	2076
Asp700I	GAANNNNTTC	1 cut(s)	894
AspA2I	CCTAGG	1 cut(s)	1517
AspLEI	GCGC	2 cut(s)	212, 2294
AspS9I	GGNCC	4 cut(s)	674, 694, 872, 1655
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	7 cut(s)	1069, 1317, 1332, 1484, 1490, 1829, 2494
AvaI	CYCGRG	1 cut(s)	1081
AvaII	GGWCC	3 cut(s)	694, 872, 1655
AvrII	CCTAGG	1 cut(s)	1517
BaeGI	GKGCMC	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	2311
BanI	GGYRCC	1 cut(s)	993
BauI	CACGAG	1 cut(s)	951
BbrPI	CACGTG	1 cut(s)	2117
BbsI	GAAGAC	3 cut(s)	849, 1266, 2366
Bbv12I	GWGCWC	1 cut(s)	2427
BbvI	GCAGC	6 cut(s)	136, 139, 167, 1387, 1591, 2408
BccI	CCATC	8 cut(s)	524, 863, 977, 1433, 1547, 1555, 2258, 2564
BciT130I	CCWGG	3 cut(s)	591, 1275, 2084
BclI	TGATCA	4 cut(s)	15, 66, 91, 114
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	333, 639
BcuI	ACTAGT	2 cut(s)	1145, 2096
BfmI	CTRYAG	6 cut(s)	153, 274, 438, 757, 2176, 2484
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	535, 2467
BglII	AGATCT	1 cut(s)	1993
BisI	GCNGC	7 cut(s)	150, 153, 156, 480, 1401, 1605, 2397
BlnI	CCTAGG	1 cut(s)	1517
BlsI	GCNGC	7 cut(s)	151, 154, 157, 481, 1402, 1606, 2398
Bme1390I	CCNGG	4 cut(s)	591, 672, 1275, 2084
Bme18I	GGWCC	3 cut(s)	694, 872, 1655
BmeT110I	CYCGRG	1 cut(s)	1081
BmgT120I	GGNCC	4 cut(s)	674, 694, 872, 1655
BmiI	GGNNCC	8 cut(s)	451, 675, 695, 696, 995, 1063, 2313, 2526
BmrFI	CCNGG	4 cut(s)	591, 672, 1275, 2084
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	4 cut(s)	1088, 1214, 1601, 2348
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	3 cut(s)	849, 1266, 2366
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpuEI	CTTGAG	4 cut(s)	190, 1594, 1926, 1954
BpuMI	CCSGG	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	2117
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	5 cut(s)	76, 375, 671, 1189, 1517
BsaXI	ACNNNNNCTCC	4 cut(s)	1900, 1930, 2178, 2208
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 670, 671, 691, 712
Bse118I	RCCGGY	1 cut(s)	1008
Bse1I	ACTGG	2 cut(s)	232, 2505
Bse3DI	GCAATG	2 cut(s)	625, 2148
BseBI	CCWGG	3 cut(s)	591, 1275, 2084
BseDI	CCNNGG	5 cut(s)	76, 375, 671, 1189, 1517
BseGI	GGATG	4 cut(s)	650, 681, 1229, 1833
BseLI	CCNNNNNNNGG	5 cut(s)	228, 670, 671, 691, 712
BseMI	GCAATG	2 cut(s)	625, 2148
BseMII	CTCAG	2 cut(s)	271, 2124
BseNI	ACTGG	2 cut(s)	232, 2505
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	6 cut(s)	136, 139, 167, 1387, 1591, 2408
BsgI	GTGCAG	2 cut(s)	2415, 2445
Bsh1236I	CGCG	1 cut(s)	2432
BshFI	GGCC	4 cut(s)	676, 1012, 1418, 1525
BshNI	GGYRCC	1 cut(s)	993
BsiHKAI	GWGCWC	1 cut(s)	2427
BsiHKCI	CYCGRG	1 cut(s)	1081
BsiSI	CCGG	2 cut(s)	671, 1009
BslFI	GGGAC	5 cut(s)	185, 707, 1578, 1698, 2125
BslI	CCNNNNNNNGG	5 cut(s)	228, 670, 671, 691, 712
BsmAI	GTCTC	2 cut(s)	333, 639
BsmFI	GGGAC	5 cut(s)	185, 707, 1578, 1698, 2125
BsmI	GAATGC	2 cut(s)	802, 1809
BsnI	GGCC	4 cut(s)	676, 1012, 1418, 1525
Bso31I	GGTCTC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	1081
Bsp1286I	GDGCHC	2 cut(s)	627, 2427
Bsp19I	CCATGG	1 cut(s)	76
BspANI	GGCC	4 cut(s)	676, 1012, 1418, 1525
BspCNI	CTCAG	2 cut(s)	270, 2125
BspFNI	CGCG	1 cut(s)	2432
BspLI	GGNNCC	8 cut(s)	451, 675, 695, 696, 995, 1063, 2313, 2526
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	2 cut(s)	535, 2467
BspPI	GGATC	6 cut(s)	425, 541, 940, 1750, 2306, 2319
BspT107I	GGYRCC	1 cut(s)	993
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	2 cut(s)	625, 2148
BsrFI	RCCGGY	1 cut(s)	1008
BsrI	ACTGG	2 cut(s)	232, 2505
BssAI	RCCGGY	1 cut(s)	1008
BssECI	CCNNGG	5 cut(s)	76, 375, 671, 1189, 1517
BssSI	CACGAG	1 cut(s)	951
BssT1I	CCWWGG	4 cut(s)	76, 375, 1189, 1517
Bst2BI	CACGAG	1 cut(s)	951
Bst2UI	CCWGG	3 cut(s)	591, 1275, 2084
Bst4CI	ACNGT	8 cut(s)	614, 1139, 1157, 1181, 1247, 1817, 2180, 2352
Bst6I	CTCTTC	3 cut(s)	1441, 1697, 1815
BstBAI	YACGTR	1 cut(s)	2117
BstC8I	GCNNGC	6 cut(s)	706, 1010, 1285, 1913, 2475, 2496
BstDEI	CTNAG	2 cut(s)	257, 2133
BstDSI	CCRYGG	1 cut(s)	76
BstEII	GGTNACC	1 cut(s)	2500
BstF5I	GGATG	4 cut(s)	650, 681, 1229, 1833
BstFNI	CGCG	1 cut(s)	2432
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 2294
BstMAI	GTCTC	2 cut(s)	333, 639
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 250, 320, 1397, 1584, 1957
BstNI	CCWGG	3 cut(s)	591, 1275, 2084
BstNSI	RCATGY	3 cut(s)	1849, 2128, 2498
BstPI	GGTNACC	1 cut(s)	2500
BstSCI	CCNGG	4 cut(s)	589, 670, 1273, 2082
BstSFI	CTRYAG	6 cut(s)	153, 274, 438, 757, 2176, 2484
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	1 cut(s)	2432
BstV1I	GCAGC	6 cut(s)	136, 139, 167, 1387, 1591, 2408
BstV2I	GAAGAC	3 cut(s)	849, 1266, 2366
BstX2I	RGATCY	2 cut(s)	1993, 2311
BstXI	CCANNNNNNTGG	2 cut(s)	1024, 1799
BstYI	RGATCY	2 cut(s)	1993, 2311
BsuRI	GGCC	4 cut(s)	676, 1012, 1418, 1525
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	650, 681, 1229, 1833
BtsIMutI	CAGTG	3 cut(s)	225, 968, 1144
BveI	ACCTGC	2 cut(s)	535, 2467
Cac8I	GCNNGC	6 cut(s)	706, 1010, 1285, 1913, 2475, 2496
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	2 cut(s)	212, 2294
Cfr10I	RCCGGY	1 cut(s)	1008
Cfr13I	GGNCC	4 cut(s)	674, 694, 872, 1655
CsiI	ACCWGGT	1 cut(s)	1273
Csp6I	GTAC	4 cut(s)	298, 1143, 1843, 2012
CspCI	CAANNNNNGTGG	4 cut(s)	289, 324, 400, 435
CviQI	GTAC	4 cut(s)	298, 1143, 1843, 2012
DdeI	CTNAG	2 cut(s)	257, 2133
DraI	TTTAAA	1 cut(s)	1069
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	3 cut(s)	1441, 1697, 1815
EarI	CTCTTC	3 cut(s)	1441, 1697, 1815
Eco130I	CCWWGG	4 cut(s)	76, 375, 1189, 1517
Eco147I	AGGCCT	1 cut(s)	1525
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	694, 872, 1655
Eco47III	AGCGCT	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	885, 1492, 1644
Eco72I	CACGTG	1 cut(s)	2117
Eco88I	CYCGRG	1 cut(s)	1081
Eco91I	GGTNACC	1 cut(s)	2500
EcoO109I	RGGNCCY	2 cut(s)	674, 694
EcoO65I	GGTNACC	1 cut(s)	2500
EcoRII	CCWGG	3 cut(s)	589, 1273, 2082
EcoT14I	CCWWGG	4 cut(s)	76, 375, 1189, 1517
EcoT22I	ATGCAT	2 cut(s)	1594, 2272
ErhI	CCWWGG	4 cut(s)	76, 375, 1189, 1517
FalI	AAGNNNNNCTT	4 cut(s)	1935, 1967, 2358, 2390
FaqI	GGGAC	5 cut(s)	185, 707, 1578, 1698, 2125
FauI	CCCGC	1 cut(s)	713
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	4 cut(s)	15, 66, 91, 114
FblI	GTMKAC	2 cut(s)	2175, 2333
Fnu4HI	GCNGC	7 cut(s)	150, 153, 156, 480, 1401, 1605, 2397
FokI	GGATG	4 cut(s)	637, 668, 1236, 1840
Fsp4HI	GCNGC	7 cut(s)	150, 153, 156, 480, 1401, 1605, 2397
GlaI	GCGC	2 cut(s)	211, 2293
GluI	GCNGC	7 cut(s)	150, 153, 156, 480, 1401, 1605, 2397
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	676, 1012, 1418, 1525
HapII	CCGG	2 cut(s)	671, 1009
HhaI	GCGC	2 cut(s)	212, 2294
Hin6I	GCGC	2 cut(s)	210, 2292
HinP1I	GCGC	2 cut(s)	210, 2292
HincII	GTYRAC	3 cut(s)	610, 658, 2436
HindII	GTYRAC	3 cut(s)	610, 658, 2436
HindIII	AAGCTT	3 cut(s)	127, 914, 1634
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	2 cut(s)	671, 1009
HphI	GGTGA	7 cut(s)	1069, 1317, 1332, 1484, 1490, 1829, 2494
Hpy166II	GTNNAC	7 cut(s)	237, 610, 658, 1243, 2176, 2334, 2436
Hpy8I	GTNNAC	7 cut(s)	237, 610, 658, 1243, 2176, 2334, 2436
HpyAV	CCTTC	6 cut(s)	410, 722, 1637, 1925, 2141, 2282
HpyCH4III	ACNGT	8 cut(s)	614, 1139, 1157, 1181, 1247, 1817, 2180, 2352
HpyCH4IV	ACGT	3 cut(s)	2010, 2116, 2575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 250, 320, 1397, 1584, 1957
HpyF3I	CTNAG	2 cut(s)	257, 2133
HpySE526I	ACGT	3 cut(s)	2010, 2116, 2575
HspAI	GCGC	2 cut(s)	210, 2292
KflI	GGGWCCC	1 cut(s)	694
KroI	GCCGGC	1 cut(s)	1008
KroNI	GCCGGC	1 cut(s)	1010
Ksp22I	TGATCA	4 cut(s)	15, 66, 91, 114
KspAI	GTTAAC	1 cut(s)	658
LmnI	GCTCC	3 cut(s)	455, 1908, 2524
Lsp1109I	GCAGC	6 cut(s)	136, 139, 167, 1387, 1591, 2408
LweI	GCATC	4 cut(s)	1088, 1214, 1601, 2348
MabI	ACCWGGT	1 cut(s)	1273
MaeII	ACGT	3 cut(s)	2010, 2116, 2575
MaeIII	GTNAC	8 cut(s)	882, 1133, 1157, 1181, 1338, 2006, 2120, 2500
MfeI	CAATTG	2 cut(s)	710, 1496
MflI	RGATCY	2 cut(s)	1993, 2311
MhlI	GDGCHC	2 cut(s)	627, 2427
MlyI	GAGTC	3 cut(s)	171, 335, 374
MmeI	TCCRAC	3 cut(s)	294, 408, 2339
Mph1103I	ATGCAT	2 cut(s)	1594, 2272
MroNI	GCCGGC	1 cut(s)	1008
MroXI	GAANNNNTTC	1 cut(s)	894
MslI	CAYNNNNRTG	1 cut(s)	1022
MspI	CCGG	2 cut(s)	671, 1009
MspR9I	CCNGG	4 cut(s)	591, 672, 1275, 2084
MunI	CAATTG	2 cut(s)	710, 1496
Mva1269I	GAATGC	2 cut(s)	802, 1809
MvaI	CCWGG	3 cut(s)	591, 1275, 2084
MvnI	CGCG	1 cut(s)	2432
MwoI	GCNNNNNNNGC	6 cut(s)	155, 250, 320, 1397, 1584, 1957
NaeI	GCCGGC	1 cut(s)	1010
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	877
NgoMIV	GCCGGC	1 cut(s)	1008
NlaIV	GGNNCC	8 cut(s)	451, 675, 695, 696, 995, 1063, 2313, 2526
NmuCI	GTSAC	4 cut(s)	1133, 1181, 1338, 2500
NsiI	ATGCAT	2 cut(s)	1594, 2272
NspI	RCATGY	3 cut(s)	1849, 2128, 2498
PaeI	GCATGC	1 cut(s)	2498
PaeR7I	CTCGAG	1 cut(s)	1081
PaqCI	CACCTGC	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	1525
PctI	GAATGC	2 cut(s)	802, 1809
PdiI	GCCGGC	1 cut(s)	1010
PdmI	GAANNNNTTC	1 cut(s)	894
PkrI	GCNGC	7 cut(s)	151, 154, 157, 481, 1402, 1606, 2398
PleI	GAGTC	3 cut(s)	171, 335, 374
PmaCI	CACGTG	1 cut(s)	2117
PmlI	CACGTG	1 cut(s)	2117
PpsI	GAGTC	3 cut(s)	171, 335, 374
Ppu21I	YACGTR	1 cut(s)	2117
PpuMI	RGGWCCY	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	2076
PsiI	TTATAA	1 cut(s)	1665
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	3 cut(s)	589, 1273, 2082
PspCI	CACGTG	1 cut(s)	2117
PspEI	GGTNACC	1 cut(s)	2500
PspGI	CCWGG	3 cut(s)	589, 1273, 2082
PspN4I	GGNNCC	8 cut(s)	451, 675, 695, 696, 995, 1063, 2313, 2526
PspPI	GGNCC	4 cut(s)	674, 694, 872, 1655
PspPPI	RGGWCCY	1 cut(s)	694
PspXI	VCTCGAGB	1 cut(s)	1081
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	1993, 2311
RsaI	GTAC	4 cut(s)	299, 1144, 1844, 2013
RsaNI	GTAC	4 cut(s)	298, 1143, 1843, 2012
RseI	CAYNNNNRTG	1 cut(s)	1022
SatI	GCNGC	7 cut(s)	150, 153, 156, 480, 1401, 1605, 2397
Sau96I	GGNCC	4 cut(s)	674, 694, 872, 1655
SchI	GAGTC	3 cut(s)	171, 335, 374
ScrFI	CCNGG	4 cut(s)	591, 672, 1275, 2084
SduI	GDGCHC	2 cut(s)	627, 2427
SexAI	ACCWGGT	1 cut(s)	1273
SfaNI	GCATC	4 cut(s)	1088, 1214, 1601, 2348
SfcI	CTRYAG	6 cut(s)	153, 274, 438, 757, 2176, 2484
Sfr274I	CTCGAG	1 cut(s)	1081
SinI	GGWCC	3 cut(s)	694, 872, 1655
SlaI	CTCGAG	1 cut(s)	1081
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	5 cut(s)	205, 1081, 1573, 1941, 1969
SmoI	CTYRAG	5 cut(s)	205, 1081, 1573, 1941, 1969
SpeI	ACTAGT	2 cut(s)	1145, 2096
SphI	GCATGC	1 cut(s)	2498
SseBI	AGGCCT	1 cut(s)	1525
SspI	AATATT	1 cut(s)	166
StuI	AGGCCT	1 cut(s)	1525
StyD4I	CCNGG	4 cut(s)	589, 670, 1273, 2082
StyI	CCWWGG	4 cut(s)	76, 375, 1189, 1517
TaaI	ACNGT	8 cut(s)	614, 1139, 1157, 1181, 1247, 1817, 2180, 2352
TaiI	ACGT	3 cut(s)	2013, 2119, 2578
TaqI	TCGA	4 cut(s)	1082, 1197, 1485, 2404
TatI	WGTACW	1 cut(s)	1842
TauI	GCSGC	1 cut(s)	482
TscAI	CASTG	3 cut(s)	232, 968, 1144
TseFI	GTSAC	4 cut(s)	1133, 1181, 1338, 2500
TseI	GCWGC	6 cut(s)	149, 152, 155, 1400, 1604, 2396
Tsp45I	GTSAC	4 cut(s)	1133, 1181, 1338, 2500
TspDTI	ATGAA	9 cut(s)	611, 670, 855, 1764, 1782, 1976, 2037, 2045, 2457
TspGWI	ACGGA	1 cut(s)	643
TspRI	CASTG	3 cut(s)	232, 968, 1144
VpaK11BI	GGWCC	3 cut(s)	694, 872, 1655
VspI	ATTAAT	1 cut(s)	2076
XapI	RAATTY	5 cut(s)	717, 1964, 2040, 2151, 2532
XbaI	TCTAGA	1 cut(s)	1900
XceI	RCATGY	3 cut(s)	1849, 2128, 2498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2080
XhoI	CTCGAG	1 cut(s)	1081
XmaJI	CCTAGG	1 cut(s)	1517
XmiI	GTMKAC	2 cut(s)	2175, 2333
XmnI	GAANNNNTTC	1 cut(s)	894
Zsp2I	ATGCAT	2 cut(s)	1594, 2272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.