Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

21471873 .. 21472297

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAACGAGATCAATACAACGGAGCAAGCAATTCCAACTAGGTACTACTGCTACAGGTGTCGCCATGCGGTCACTGTGCATGTCGAAATGAAATGCCCTTTCTGCCAAGGCGGCTTCATCCAACCATGCGAGGGTGTCTACCTAGCTATGCCATCCGAATCTGAGCATTCTGAAAGTGGTTCAGATGGAGAGAGCACCACTGGTATCTACGATTCAAATCCCAGTGGTTTTGTTACACTTGGCATTGATTCCCAAGATGTAAATAATGAGGTTGACGAGCAACGCCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

98

Amino Acids

10.75

Weight (kDa)

4.5

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	2 cut(s)	68, 111
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	216
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	197
BccI	CCATC	2 cut(s)	160, 179
BfaI	CTAG	2 cut(s)	39, 143
BfmI	CTRYAG	1 cut(s)	52
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	106, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	205, 222
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	106, 286
BseGI	GGATG	2 cut(s)	117, 152
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	205, 222
BsiHKAI	GWGCWC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	2 cut(s)	68, 111
BspCNI	CTCAG	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	205, 222
BssECI	CCNNGG	2 cut(s)	106, 286
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	106, 286
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	117, 152
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 111
BstNSI	RCATGY	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	117, 152
BtsIMutI	CAGTG	3 cut(s)	72, 198, 229
Cac8I	GCNNGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	4 cut(s)	65, 80, 126, 287
CviJI	RGCY	2 cut(s)	114, 146
CviKI_1	RGCY	2 cut(s)	114, 146
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	106, 286
EcoT14I	CCWWGG	2 cut(s)	106, 286
ErhI	CCWWGG	2 cut(s)	106, 286
FaeI	CATG	4 cut(s)	68, 83, 129, 290
FaiI	YATR	5 cut(s)	66, 81, 127, 149, 288
FatI	CATG	4 cut(s)	64, 79, 125, 286
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	2 cut(s)	104, 139
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	39, 143
GluI	GCNGC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	68, 83, 129, 290
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	158, 212, 248
Hpy166II	GTNNAC	2 cut(s)	139, 274
Hpy188I	TCNGA	4 cut(s)	157, 163, 172, 184
Hpy8I	GTNNAC	2 cut(s)	139, 274
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 111
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	68, 83, 129, 290
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	40, 186, 235
MaeI	CTAG	2 cut(s)	39, 143
MaeIII	GTNAC	2 cut(s)	70, 232
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	30
MmeI	TCCRAC	2 cut(s)	59, 145
MnlI	CCTC	2 cut(s)	124, 262
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	102, 111
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	4 cut(s)	68, 83, 129, 290
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	83
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	158, 212, 248
PkrI	GCNGC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	5 cut(s)	44, 59, 144, 148, 273
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	2 cut(s)	68, 111
SspMI	CTAG	2 cut(s)	39, 143
StyI	CCWWGG	2 cut(s)	106, 286
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	30
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	158, 212, 248
TscAI	CASTG	3 cut(s)	79, 205, 229
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	17, 104, 106
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	3 cut(s)	79, 205, 229
XceI	RCATGY	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	39, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.