Rorug05G0179800

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002406
Physical Location & Seq
Reverse (-)
17214538 .. 17215689
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0179800.1

Sequence Viewer

Length: 1152 bp
ATGCCGTTGTATGCTATGAATTGCTACTTGTTACCAAAAGGGTTGTGCGATGATATTCATCAACTATGTGCGTCTTTCTTTTGGGGAGACACTGATGCTAAAAAAAAGATTCAATGGCGTAGCTGGGAAAAATTGTGCCTCACCAAGCAAGAAGGAGGTATGGGCTTTAAAAATATTTATGCATATAATCTGGCCATGTTAGCTAAGCAGGGATGGAGATTTTTATTGAACCCGGACTCCTTAGTTGCTCGATTGTTTAAAGCTCGATATTTCCCTAACTGCACTTTTTGGGAGGCTCAACTAGGAGATGCTCCATCCTTCTCTTGGAGAAGTATCCTTGAGGGTAGACCTATCTTGAAGGCAGGGGTTAAATGGAGAATTGGAGATGGATCAAATGTGCATATGTGGAATGATCAATGGATTCCAAACTGTTCCAGCTTTCTACTTCAACAATCAAGACATTCTTCTTCCTTCAATATGGTCTCTGATCTTATTAATCCACATGATCGTACGTGGATCCATGCTACTATTAATACTCTCTTCCCAGCTGTTATTGCAGAGCAGATCTTGACTATTCCCTTGAGTAGGAGAACAGTGGCAGATAAAATTATGTGGGCACCGGAAAAGAGGGGTTTCTTTACGGTCAAGTCAGCTTATTGGATAGCACGTCAACAGGTTTTGGGACATGTTCTCACTACTTCTTCTAGCGGGGATCCTTTTAGAGAATTATGGCGTAGACTATGGAAAGCAAGGGTGCCTGGCAAAGTACATATTTGTGTATGGCGGGCATGTCAGAATCTTTTGCCTACTAGAGACCGTCTACTGACTAAGGGTTACAATGGTGATACAAGATGCTTATTGTGCTCCGCCACTGTGGAGGACACCACACATATTTTCTGTAAATGTCCGCTGGCCATTGAGCTTCTCTCTGCCTCTCCATTTCATCTAGCTTCTTCTTTGATTCCTAACATGCCTTTTAAGGAATGGATGTTGGAAGTTGCCCTCAAGCTTAAACCCAAGGTGTTTGAGCAATTATTGATGATCATTTGGTCGTTATGGAAGAACCGAAATGCTGTGCTATGGGAGAATAGTTTGAAGCCTGCTTCTGTACTTTTCTTCTTTGCTTCAATTTCACTTTCCCGGCATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
FNIP LRR_8 NB-ARC

Protein Analysis

383

Amino Acids

44.25

Weight (kDa)

9.57

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 213 - 307 4.2e-17 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 616, 754
AccI GTMKAC 3 cut(s) 346, 736, 820
AciI CCGC 4 cut(s) 708, 784, 867, 908
AclWI GGATC 5 cut(s) 397, 511, 524, 707, 720
AcoI YGGCCR 2 cut(s) 192, 912
AfaI GTAC 3 cut(s) 511, 768, 1110
AfiI CCNNNNNNNGG 2 cut(s) 324, 585
AflIII ACRYGT 1 cut(s) 685
AgsI TTSAA 7 cut(s) 113, 229, 358, 449, 475, 1096, 1128
AjiI CACGTC 1 cut(s) 668
AjnI CCWGG 1 cut(s) 757
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 9 cut(s) 123, 203, 263, 438, 548, 653, 922, 950, 1009
AluI AGCT 9 cut(s) 123, 203, 263, 438, 548, 653, 922, 950, 1009
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 3 cut(s) 81, 487, 807
AlwI GGATC 5 cut(s) 397, 511, 524, 707, 720
AoxI GGCC 2 cut(s) 192, 912
AseI ATTAAT 2 cut(s) 495, 531
AsuC2I CCSGG 2 cut(s) 233, 1141
AsuHPI GGTGA 2 cut(s) 133, 854
BaeGI GKGCMC 1 cut(s) 619
BalI TGGCCA 2 cut(s) 194, 914
BamHI GGATCC 2 cut(s) 516, 712
BanI GGYRCC 2 cut(s) 616, 754
Bbv12I GWGCWC 1 cut(s) 866
BccI CCATC 3 cut(s) 207, 322, 380
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 344
BclI TGATCA 2 cut(s) 412, 1041
BcnI CCSGG 2 cut(s) 233, 1141
BcoDI GTCTC 3 cut(s) 81, 487, 807
BfaI CTAG 4 cut(s) 302, 705, 810, 947
BfuI GTATCC 1 cut(s) 344
BglII AGATCT 1 cut(s) 564
BlpI GCTNAGC 1 cut(s) 204
Bme1390I CCNGG 3 cut(s) 233, 759, 1141
BmgBI CACGTC 1 cut(s) 668
BmiI GGNNCC 4 cut(s) 518, 618, 714, 756
BmrFI CCNGG 3 cut(s) 233, 759, 1141
BmsI GCATC 3 cut(s) 85, 298, 842
BplI GAGNNNNNCTC 2 cut(s) 911, 943
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 3 cut(s) 359, 601, 989
BpuMI CCSGG 2 cut(s) 233, 1141
BsaAI YACGTR 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 57
BsaI GGTCTC 2 cut(s) 487, 807
BsaJI CCNNGG 1 cut(s) 1017
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 585
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 1 cut(s) 1017
BseGI GGATG 3 cut(s) 218, 314, 993
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 324, 585
BseSI GKGCMC 1 cut(s) 619
BseYI CCCAGC 2 cut(s) 123, 544
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 194, 914
BshNI GGYRCC 2 cut(s) 616, 754
BsiHKAI GWGCWC 1 cut(s) 866
BsiSI CCGG 3 cut(s) 233, 620, 1141
BsiWI CGTACG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 2 cut(s) 324, 585
BsmAI GTCTC 3 cut(s) 81, 487, 807
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 2 cut(s) 194, 914
Bso31I GGTCTC 2 cut(s) 487, 807
Bsp1286I GDGCHC 2 cut(s) 619, 866
Bsp143I GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 4 cut(s) 708, 784, 867, 908
BspANI GGCC 2 cut(s) 194, 914
BspLI GGNNCC 4 cut(s) 518, 618, 714, 756
BspPI GGATC 5 cut(s) 397, 511, 524, 707, 720
BspT107I GGYRCC 2 cut(s) 616, 754
BspTNI GGTCTC 2 cut(s) 487, 807
BssECI CCNNGG 1 cut(s) 1017
BssMI GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
BssT1I CCWWGG 1 cut(s) 1017
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 5 cut(s) 431, 595, 643, 818, 874
Bst6I CTCTTC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 786, 912, 1101
BstDEI CTNAG 3 cut(s) 204, 241, 828
BstENI CCTNNNNNAGG 1 cut(s) 583
BstF5I GGATG 3 cut(s) 218, 314, 993
BstKTI GATC 8 cut(s) 392, 415, 490, 508, 519, 567, 715, 1044
BstMAI GTCTC 3 cut(s) 81, 487, 807
BstMBI GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
BstMWI GCNNNNNNNGC 3 cut(s) 200, 554, 861
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 3 cut(s) 689, 792, 973
BstSCI CCNGG 3 cut(s) 231, 757, 1139
BstSLI GKGCMC 1 cut(s) 619
BstX2I RGATCY 3 cut(s) 516, 564, 712
BstYI RGATCY 3 cut(s) 516, 564, 712
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 2 cut(s) 194, 914
BtgZI GCGATG 1 cut(s) 63
BtrI CACGTC 1 cut(s) 668
BtsCI GGATG 3 cut(s) 218, 314, 993
BtsIMutI CAGTG 3 cut(s) 90, 600, 870
Cac8I GCNNGC 3 cut(s) 786, 912, 1101
CseI GACGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 510, 767, 1109
CviAII CATG 6 cut(s) 196, 503, 521, 686, 789, 970
CviQI GTAC 3 cut(s) 510, 767, 1109
DdeI CTNAG 3 cut(s) 204, 241, 828
DpnI GATC 8 cut(s) 391, 414, 489, 507, 518, 566, 714, 1043
DpnII GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
DraI TTTAAA 2 cut(s) 169, 259
EaeI YGGCCR 2 cut(s) 192, 912
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
EciI GGCGGA 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 1017
Eco31I GGTCTC 2 cut(s) 487, 807
EcoNI CCTNNNNNAGG 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 1017
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 1017
FaeI CATG 6 cut(s) 199, 506, 524, 689, 792, 973
FalI AAGNNNNNCTT 2 cut(s) 448, 480
FaqI GGGAC 1 cut(s) 696
FatI CATG 6 cut(s) 195, 502, 520, 685, 788, 969
FauI CCCGC 2 cut(s) 701, 777
FauNDI CATATG 2 cut(s) 402, 1146
FbaI TGATCA 2 cut(s) 412, 1041
FblI GTMKAC 3 cut(s) 346, 736, 820
FokI GGATG 3 cut(s) 225, 301, 1000
FspBI CTAG 4 cut(s) 302, 705, 810, 947
GsaI CCCAGC 2 cut(s) 127, 548
HaeIII GGCC 2 cut(s) 194, 914
HapII CCGG 3 cut(s) 233, 620, 1141
HgaI GACGC 1 cut(s) 60
Hin1II CATG 6 cut(s) 199, 506, 524, 689, 792, 973
HincII GTYRAC 1 cut(s) 671
HindII GTYRAC 1 cut(s) 671
HindIII AAGCTT 1 cut(s) 1007
HinfI GANTC 5 cut(s) 109, 236, 421, 796, 961
HpaII CCGG 3 cut(s) 233, 620, 1141
HphI GGTGA 2 cut(s) 133, 854
Hpy166II GTNNAC 4 cut(s) 347, 671, 737, 821
Hpy188I TCNGA 2 cut(s) 487, 795
Hpy188III TCNNGA 3 cut(s) 355, 456, 568
Hpy8I GTNNAC 4 cut(s) 347, 671, 737, 821
HpyAV CCTTC 4 cut(s) 146, 328, 352, 481
HpyCH4III ACNGT 5 cut(s) 431, 595, 643, 818, 874
HpyCH4IV ACGT 2 cut(s) 512, 667
HpyCH4V TGCA 4 cut(s) 182, 282, 400, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 554, 861
HpyF3I CTNAG 3 cut(s) 204, 241, 828
HpySE526I ACGT 2 cut(s) 512, 667
Hsp92II CATG 6 cut(s) 199, 506, 524, 689, 792, 973
Ksp22I TGATCA 2 cut(s) 412, 1041
Kzo9I GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
LmnI GCTCC 2 cut(s) 316, 869
LweI GCATC 3 cut(s) 85, 298, 842
MaeI CTAG 4 cut(s) 302, 705, 810, 947
MaeII ACGT 2 cut(s) 512, 667
MaeIII GTNAC 2 cut(s) 30, 833
MalI GATC 8 cut(s) 391, 414, 489, 507, 518, 566, 714, 1043
MboI GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
MboII GAAGA 7 cut(s) 456, 459, 532, 693, 945, 1072, 1108
MflI RGATCY 3 cut(s) 516, 564, 712
MhlI GDGCHC 2 cut(s) 619, 866
MlsI TGGCCA 2 cut(s) 194, 914
MluCI AATT 7 cut(s) 19, 131, 378, 606, 725, 1031, 1128
MluNI TGGCCA 2 cut(s) 194, 914
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 972
MnlI CCTC 8 cut(s) 149, 149, 286, 334, 621, 871, 943, 1013
Mox20I TGGCCA 2 cut(s) 194, 914
Mph1103I ATGCAT 1 cut(s) 184
MscI TGGCCA 2 cut(s) 194, 914
MseI TTAA 7 cut(s) 168, 258, 369, 495, 531, 978, 1011
MslI CAYNNNNRTG 1 cut(s) 774
Msp20I TGGCCA 2 cut(s) 194, 914
MspA1I CMGCKG 2 cut(s) 548, 910
MspI CCGG 3 cut(s) 233, 620, 1141
MspR9I CCNGG 3 cut(s) 233, 759, 1141
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 3 cut(s) 200, 554, 861
NciI CCSGG 2 cut(s) 233, 1141
NdeI CATATG 2 cut(s) 402, 1146
NdeII GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
NlaIII CATG 6 cut(s) 199, 506, 524, 689, 792, 973
NlaIV GGNNCC 4 cut(s) 518, 618, 714, 756
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 3 cut(s) 689, 792, 973
PciI ACATGT 1 cut(s) 685
PfeI GAWTC 4 cut(s) 109, 421, 796, 961
Pfl23II CGTACG 1 cut(s) 509
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 513
PscI ACATGT 1 cut(s) 685
PshBI ATTAAT 2 cut(s) 495, 531
Psp6I CCWGG 1 cut(s) 757
PspFI CCCAGC 2 cut(s) 123, 544
PspGI CCWGG 1 cut(s) 757
PspLI CGTACG 1 cut(s) 509
PspN4I GGNNCC 4 cut(s) 518, 618, 714, 756
PsuI RGATCY 3 cut(s) 516, 564, 712
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 511, 768, 1110
RsaNI GTAC 3 cut(s) 510, 767, 1109
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 7 cut(s) 168, 258, 369, 495, 531, 978, 1011
Sau3AI GATC 8 cut(s) 389, 412, 487, 505, 516, 564, 712, 1041
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 233, 759, 1141
SduI GDGCHC 2 cut(s) 619, 866
SfaNI GCATC 3 cut(s) 85, 298, 842
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 3 cut(s) 338, 580, 1004
SmoI CTYRAG 3 cut(s) 338, 580, 1004
Sse9I AATT 7 cut(s) 19, 131, 378, 606, 725, 1031, 1128
SsiI CCGC 4 cut(s) 708, 784, 867, 908
SspI AATATT 1 cut(s) 175
SspMI CTAG 4 cut(s) 302, 705, 810, 947
StyD4I CCNGG 3 cut(s) 231, 757, 1139
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 5 cut(s) 431, 595, 643, 818, 874
TaiI ACGT 2 cut(s) 515, 670
TaqI TCGA 2 cut(s) 250, 265
TasI AATT 7 cut(s) 19, 131, 378, 606, 725, 1031, 1128
TatI WGTACW 2 cut(s) 766, 1108
TfiI GAWTC 4 cut(s) 109, 421, 796, 961
Tru1I TTAA 7 cut(s) 168, 258, 369, 495, 531, 978, 1011
Tru9I TTAA 7 cut(s) 168, 258, 369, 495, 531, 978, 1011
TscAI CASTG 3 cut(s) 97, 600, 877
TspDTI ATGAA 3 cut(s) 32, 47, 932
TspRI CASTG 3 cut(s) 97, 600, 877
VspI ATTAAT 2 cut(s) 495, 531
XagI CCTNNNNNAGG 1 cut(s) 583
XceI RCATGY 3 cut(s) 689, 792, 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XmiI GTMKAC 3 cut(s) 346, 736, 820
XspI CTAG 4 cut(s) 302, 705, 810, 947
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.