Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

31789451 .. 31790141

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1217900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGATGGAGATGGAGATGGAGATGGAAAGCTATATGAAAGACAGCAATGTAGGTGTTGGCGTCGTCGTTGGTGGAGTAGAGACGCCCACTGACACTGCCAATCACAAGCTTGCTGCTCGGGCCTTGCTGAAGTCGTGGATCCCAGCCTTGATTTTTGGAGCTGTATGTCAATTTATAAAAGCAAAAGGTAGTTGGGAGATTAACGAGATAAAGACAACGGAGAAAGCAATTGCAACTAGGTACTACTGTCACAGGTGTCGTCAAGTGGTCACTGTGGATGTCGAAACATCATGCCCTTCCTGCCAAGGCGGCTTCATCCAAGCATGCGAGGGTGTTGCCTCACTCTACCTAGCCATGCCATCCGAGTCTGAGCTTTCTGAAAGTGGTTCAGATGGAGAGAGCACCACTGTAATTTATCCTTTGATCAAACTTTCCTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

149

Amino Acids

16.08

Weight (kDa)

4.82

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	80 - 108	2.3e-08	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	2 cut(s)	136, 149
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	63, 86
AfaI	GTAC	1 cut(s)	245
AluBI	AGCT	4 cut(s)	33, 112, 164, 376
AluI	AGCT	4 cut(s)	33, 112, 164, 376
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	136, 149
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	120
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BamHI	GGATCC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	5 cut(s)	7, 13, 19, 370, 389
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	240, 353
BglI	GCCNNNNNGGC	1 cut(s)	312
BisI	GCNGC	2 cut(s)	117, 313
BlsI	GCNGC	2 cut(s)	118, 314
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	143
BsaHI	GRCGYC	2 cut(s)	63, 86
BsaJI	CCNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	3 cut(s)	286, 318, 362
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	141, 426
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	136, 149
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	141, 426
BssNI	GRCGYC	2 cut(s)	63, 86
BssT1I	CCWWGG	1 cut(s)	307
Bst4CI	ACNGT	3 cut(s)	251, 277, 412
BstACI	GRCGYC	2 cut(s)	63, 86
BstC8I	GCNNGC	2 cut(s)	114, 328
BstDEI	CTNAG	2 cut(s)	372, 444
BstF5I	GGATG	3 cut(s)	286, 318, 362
BstKTI	GATC	2 cut(s)	144, 429
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	141, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 303, 312
BstNSI	RCATGY	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	3 cut(s)	286, 318, 362
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	4 cut(s)	90, 96, 273, 408
Cac8I	GCNNGC	2 cut(s)	114, 328
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	2 cut(s)	52, 94
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	3 cut(s)	294, 327, 358
CviJI	RGCY	8 cut(s)	33, 112, 125, 149, 164, 315, 356, 376
CviKI_1	RGCY	8 cut(s)	33, 112, 125, 149, 164, 315, 356, 376
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	372, 444
DpnI	GATC	2 cut(s)	143, 428
DpnII	GATC	2 cut(s)	141, 426
Eco130I	CCWWGG	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	297, 330, 361
FaiI	YATR	7 cut(s)	36, 38, 169, 179, 295, 328, 359
FatI	CATG	3 cut(s)	293, 326, 357
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	117, 313
FokI	GGATG	3 cut(s)	293, 305, 349
Fsp4HI	GCNGC	2 cut(s)	117, 313
FspBI	CTAG	2 cut(s)	240, 353
GluI	GCNGC	2 cut(s)	117, 313
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	2 cut(s)	52, 94
Hin1I	GRCGYC	2 cut(s)	63, 86
Hin1II	CATG	3 cut(s)	297, 330, 361
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	368
Hpy188I	TCNGA	4 cut(s)	367, 373, 382, 394
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	3 cut(s)	251, 277, 412
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 303, 312
HpyF3I	CTNAG	2 cut(s)	372, 444
Hsp92I	GRCGYC	2 cut(s)	63, 86
Hsp92II	CATG	3 cut(s)	297, 330, 361
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	141, 426
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	3 cut(s)	159, 241, 316
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	240, 353
MaeIII	GTNAC	2 cut(s)	251, 271
MalI	GATC	2 cut(s)	143, 428
MboI	GATC	2 cut(s)	141, 426
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	3 cut(s)	173, 231, 414
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	325, 352
MseI	TTAA	1 cut(s)	204
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	122, 303, 312
NdeII	GATC	2 cut(s)	141, 426
NlaIII	CATG	3 cut(s)	297, 330, 361
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	2 cut(s)	251, 271
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	118, 314
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	117, 313
Sau3AI	GATC	2 cut(s)	141, 426
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	9 cut(s)	35, 58, 114, 166, 193, 245, 260, 354, 378
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	3 cut(s)	173, 231, 414
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	240, 353
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	251, 277, 412
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	173, 231, 414
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	4 cut(s)	97, 103, 280, 415
TseFI	GTSAC	2 cut(s)	251, 271
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	251, 271
TspDTI	ATGAA	2 cut(s)	53, 307
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	4 cut(s)	97, 103, 280, 415
XceI	RCATGY	1 cut(s)	330
XspI	CTAG	2 cut(s)	240, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.