Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

58319696 .. 58325077

Gene Structure 5382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGCATGGGACATGGATCATGAGGCATGCAAGCGAGTTGGATAAAGAGGATAAGGTATTCTCCTTGGGGGCACTGGTACGTGTCCTTTATTTGGAGGGACTTGAATTGTTCCGCAGCGTCCGCTCTGCAATCTTGACCTTTTATGCTGCACGGCAACTTACGAATGGAATAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCAGCAGTGTGCTGTCCCTTTGGATGTCAATATGGCATACCCTCTTTGCCAAGGCTGTTTTATGGAAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAACCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGAGTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGTAGAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTCCAGAATGTTTCAAGTTCCAATAATGGGTTGCTTCCACTTAACCTTGTTGTGAATGATGGCCCTGTCCAGCCACATGATGGGACATGGGTTACTTCATCGGTCTGGATCTTTTCAGCCGCTGGTTTCGGATTTGAGGCTGTTTCGGCATTTTTTGATCAGGCTTCCACCCCACAGAAGCCTTACTATGCATTATATGGCATGCTGTTGTCTTTCGTGGCTGTACTGGTTTGCATATTGGACCTCATTCTCAATGCCATGAAACAAAACACATCTGAGAATAACATACTTTGGAACATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTGTTCAGTTCGTTAGCTCGGCACTGCAGTTTTCATTTCTCTGCAGGCACGCTGCTAATCCTGTGAAAGTATCCGTTGTGCCTTTCTTATTTTTCTTCGTCTTGTTTGCTTTCAAATGTAGAAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

40.2

Weight (kDa)

5.47

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	4 cut(s)	115, 124, 525, 753
AclWI	GGATC	2 cut(s)	26, 749
AcuI	CTGAAG	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	2 cut(s)	81, 858
AfiI	CCNNNNNNNGG	4 cut(s)	94, 541, 660, 713
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	107, 648, 1078
AjnI	CCWGG	2 cut(s)	534, 622
AluBI	AGCT	3 cut(s)	342, 956, 981
AluI	AGCT	3 cut(s)	342, 956, 981
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	26, 749
AlwNI	CAGNNNCTG	1 cut(s)	755
AoxI	GGCC	2 cut(s)	625, 694
ApeKI	GCWGC	4 cut(s)	117, 149, 243, 1016
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	695, 874
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	874
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	538
BbvI	GCAGC	4 cut(s)	129, 136, 255, 1003
BccI	CCATC	4 cut(s)	170, 581, 686, 707
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	536, 624
BciVI	GTATCC	1 cut(s)	1045
BclI	TGATCA	2 cut(s)	595, 790
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	188, 564
BfmI	CTRYAG	2 cut(s)	989, 1006
BfoI	RGCGCY	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	1045
BisI	GCNGC	6 cut(s)	118, 150, 244, 526, 753, 1017
BlsI	GCNGC	6 cut(s)	119, 151, 245, 527, 754, 1018
Bme1390I	CCNGG	3 cut(s)	440, 536, 624
Bme18I	GGWCC	1 cut(s)	874
BmgT120I	GGNCC	2 cut(s)	695, 874
BmiI	GGNNCC	2 cut(s)	502, 540
BmrFI	CCNGG	3 cut(s)	440, 536, 624
BpuMI	CCSGG	1 cut(s)	440
BsaAI	YACGTR	2 cut(s)	83, 581
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	4 cut(s)	66, 307, 408, 496
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 541, 660, 713
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	81, 864
BseBI	CCWGG	2 cut(s)	536, 624
BseDI	CCNNGG	4 cut(s)	66, 307, 408, 496
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	4 cut(s)	94, 541, 660, 713
BseMII	CTCAG	1 cut(s)	900
BseNI	ACTGG	2 cut(s)	81, 864
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	129, 136, 255, 1003
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	627, 696
BshNI	GGYRCC	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	440, 542
BslFI	GGGAC	5 cut(s)	25, 114, 257, 422, 730
BslI	CCNNNNNNNGG	4 cut(s)	94, 541, 660, 713
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	5 cut(s)	25, 114, 257, 422, 730
BsnI	GGCC	2 cut(s)	627, 696
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	18, 595, 741, 790
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	4 cut(s)	115, 124, 525, 753
BspANI	GGCC	2 cut(s)	627, 696
BspCNI	CTCAG	1 cut(s)	901
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	502, 540
BspMAI	CTGCAG	2 cut(s)	993, 1010
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	26, 749
BspT107I	GGYRCC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	81, 864
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	4 cut(s)	66, 307, 408, 496
BssMI	GATC	4 cut(s)	18, 595, 741, 790
BssNI	GRCGYC	1 cut(s)	539
BssT1I	CCWWGG	4 cut(s)	66, 307, 408, 496
Bst2UI	CCWGG	2 cut(s)	536, 624
Bst4CI	ACNGT	3 cut(s)	194, 257, 436
BstACI	GRCGYC	1 cut(s)	539
BstBAI	YACGTR	2 cut(s)	83, 581
BstC8I	GCNNGC	7 cut(s)	30, 34, 543, 620, 836, 1010, 1014
BstDEI	CTNAG	1 cut(s)	909
BstDSI	CCRYGG	1 cut(s)	408
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	4 cut(s)	21, 598, 744, 793
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	4 cut(s)	18, 595, 741, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 522, 624, 779
BstNI	CCWGG	2 cut(s)	536, 624
BstNSI	RCATGY	3 cut(s)	32, 361, 838
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	438, 534, 622
BstSFI	CTRYAG	2 cut(s)	989, 1006
BstSLI	GKGCMC	1 cut(s)	76
BstSNI	TACGTA	1 cut(s)	581
BstV1I	GCAGC	4 cut(s)	129, 136, 255, 1003
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	1045
BsuRI	GGCC	2 cut(s)	627, 696
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	2 cut(s)	269, 986
BtsIMutI	CAGTG	4 cut(s)	74, 269, 390, 986
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	7 cut(s)	30, 34, 543, 620, 836, 1010, 1014
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	695, 874
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	80, 857
CviQI	GTAC	2 cut(s)	80, 857
DdeI	CTNAG	1 cut(s)	909
DinI	GGCGCC	1 cut(s)	540
DpnI	GATC	4 cut(s)	20, 597, 743, 792
DpnII	GATC	4 cut(s)	18, 595, 741, 790
DraI	TTTAAA	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	581
Eco130I	CCWWGG	4 cut(s)	66, 307, 408, 496
Eco47I	GGWCC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	960
Eco91I	GGTNACC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	534, 622
EcoT14I	CCWWGG	4 cut(s)	66, 307, 408, 496
EcoT22I	ATGCAT	1 cut(s)	826
EgeI	GGCGCC	1 cut(s)	540
EheI	GGCGCC	1 cut(s)	540
ErhI	CCWWGG	4 cut(s)	66, 307, 408, 496
FaqI	GGGAC	5 cut(s)	25, 114, 257, 422, 730
FbaI	TGATCA	2 cut(s)	595, 790
Fnu4HI	GCNGC	6 cut(s)	118, 150, 244, 526, 753, 1017
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	6 cut(s)	118, 150, 244, 526, 753, 1017
FspBI	CTAG	2 cut(s)	188, 564
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	6 cut(s)	118, 150, 244, 526, 753, 1017
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	627, 696
HapII	CCGG	2 cut(s)	440, 542
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	539
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	3 cut(s)	368, 464, 554
HpaII	CCGG	2 cut(s)	440, 542
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	5 cut(s)	367, 373, 595, 764, 910
Hpy188III	TCNNGA	6 cut(s)	22, 136, 188, 197, 637, 739
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	387, 432, 1086
HpyCH4III	ACNGT	3 cut(s)	194, 257, 436
HpyCH4IV	ACGT	2 cut(s)	82, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 522, 624, 779
HpyF3I	CTNAG	1 cut(s)	909
HpySE526I	ACGT	2 cut(s)	82, 580
Hsp92I	GRCGYC	1 cut(s)	539
HspAI	GCGC	1 cut(s)	539
KasI	GGCGCC	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Ksp22I	TGATCA	2 cut(s)	595, 790
Kzo9I	GATC	4 cut(s)	18, 595, 741, 790
Lsp1109I	GCAGC	4 cut(s)	129, 136, 255, 1003
MaeI	CTAG	2 cut(s)	188, 564
MaeII	ACGT	2 cut(s)	82, 580
MaeIII	GTNAC	4 cut(s)	386, 412, 604, 724
MalI	GATC	4 cut(s)	20, 597, 743, 792
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	4 cut(s)	18, 595, 741, 790
MboII	GAAGA	1 cut(s)	1051
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	107, 1096
Mly113I	GGCGCC	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	377, 473
MmeI	TCCRAC	4 cut(s)	21, 345, 455, 582
MnlI	CCTC	9 cut(s)	18, 43, 91, 217, 309, 363, 429, 763, 887
Mph1103I	ATGCAT	1 cut(s)	826
MroNI	GCCGGC	1 cut(s)	541
MseI	TTAA	2 cut(s)	182, 675
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	2 cut(s)	440, 542
MspR9I	CCNGG	3 cut(s)	440, 536, 624
MvaI	CCWGG	2 cut(s)	536, 624
MwoI	GCNNNNNNNGC	4 cut(s)	123, 522, 624, 779
NaeI	GCCGGC	1 cut(s)	543
NarI	GGCGCC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	18, 595, 741, 790
NgoMIV	GCCGGC	1 cut(s)	541
NlaIV	GGNNCC	2 cut(s)	502, 540
NmeAIII	GCCGAG	1 cut(s)	962
NmuCI	GTSAC	2 cut(s)	386, 604
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	3 cut(s)	32, 361, 838
PaeI	GCATGC	2 cut(s)	32, 838
PagI	TCATGA	1 cut(s)	21
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	6 cut(s)	119, 151, 245, 527, 754, 1018
PleI	GAGTC	2 cut(s)	376, 472
PluTI	GGCGCC	1 cut(s)	542
PpsI	GAGTC	2 cut(s)	376, 472
Ppu21I	YACGTR	2 cut(s)	83, 581
Psp6I	CCWGG	2 cut(s)	534, 622
PspEI	GGTNACC	1 cut(s)	412
PspGI	CCWGG	2 cut(s)	534, 622
PspN4I	GGNNCC	2 cut(s)	502, 540
PspPI	GGNCC	2 cut(s)	695, 874
PstI	CTGCAG	2 cut(s)	993, 1010
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	2 cut(s)	81, 858
RsaNI	GTAC	2 cut(s)	80, 857
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	182, 675
SatI	GCNGC	6 cut(s)	118, 150, 244, 526, 753, 1017
Sau3AI	GATC	4 cut(s)	18, 595, 741, 790
Sau96I	GGNCC	2 cut(s)	695, 874
SchI	GAGTC	2 cut(s)	377, 473
ScrFI	CCNGG	3 cut(s)	440, 536, 624
SduI	GDGCHC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	989, 1006
SfoI	GGCGCC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	874
SmiMI	CAYNNNNRTG	1 cut(s)	333
SnaBI	TACGTA	1 cut(s)	581
SphI	GCATGC	2 cut(s)	32, 838
Sse9I	AATT	2 cut(s)	107, 1096
SsiI	CCGC	4 cut(s)	115, 124, 525, 753
SspDI	GGCGCC	1 cut(s)	538
SspMI	CTAG	2 cut(s)	188, 564
StyD4I	CCNGG	3 cut(s)	438, 534, 622
StyI	CCWWGG	4 cut(s)	66, 307, 408, 496
TaaI	ACNGT	3 cut(s)	194, 257, 436
TaiI	ACGT	2 cut(s)	85, 583
TaqII	GACCGA	2 cut(s)	558, 724
TasI	AATT	2 cut(s)	107, 1096
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	2 cut(s)	528, 755
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	2 cut(s)	182, 675
Tru9I	TTAA	2 cut(s)	182, 675
TscAI	CASTG	4 cut(s)	81, 269, 397, 993
TseFI	GTSAC	2 cut(s)	386, 604
TseI	GCWGC	4 cut(s)	117, 149, 243, 1016
Tsp45I	GTSAC	2 cut(s)	386, 604
TspDTI	ATGAA	4 cut(s)	417, 720, 908, 987
TspGWI	ACGGA	1 cut(s)	1027
TspRI	CASTG	4 cut(s)	81, 269, 397, 993
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	874
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	3 cut(s)	32, 361, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XspI	CTAG	2 cut(s)	188, 564
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.