Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

34208966 .. 34210549

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATAGCGGCCTGAGTGAGAGTTTGATCGGGGTCGCACCACCACCACCACCACTATCATCGGAGACGGCAAGCCAGCGATGGAGGAGATTGTGTGGCCTCCTCAAGAACCGCAAGCCAAGCAAGATAACGTTCCCCGTTGCAGTGCTGATGAGATATGCACAATACCAATTTATCAACGGAATAGACAATCTAAATCTAGATAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCAAATGTTCCTAGCAGGTTTTACTGTTATCAGTGTCGTCAAGTGGTCAGTGTCACTGTGGATGTCGAAATTACATGCCCTCTCTGCCATGGCGGCTGGATACAAGAATGTAGTACCGTTGGCCTACTCTATCTTACTATGCCATCAGAATCTGAGCATTCTGCTGGTGATTCTGATGGACAGGGCCCCATTCTGATCCATCCTTCCAGTCCAACTGTCATAGACATTGTTGAGGACGGCTATGGTTCAGATCCCAACCCCAACAGGTCCCCTTTTCATAGCACTGGTTCCTATGATTACAACAACTATGTCGAGTCACACCAGGCAACGGGCAATTATGATTCTAGTTTGGAACAGGGATTACTTACACTTAGCATTGATGCAAATATTGTTGCTAACCAGCCTCATCATGGGACAGGGGTAGGGGTCAAAACCCAGAACTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

230

Amino Acids

25.07

Weight (kDa)

4.76

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	85 - 116	2.2e-06	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	246
AciI	CCGC	3 cut(s)	9, 112, 333
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	2 cut(s)	430, 485
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	568, 650
AjnI	CCWGG	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	59, 221
AlwI	GGATC	2 cut(s)	430, 485
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	4 cut(s)	10, 97, 361, 424
ApaI	GGGCCC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	424, 425, 507
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	428
BccI	CCATC	4 cut(s)	75, 391, 410, 447
BceAI	ACGGC	2 cut(s)	84, 493
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	59, 221
BfaI	CTAG	3 cut(s)	200, 252, 585
BfuAI	ACCTGC	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	2 cut(s)	10, 334
BlsI	GCNGC	2 cut(s)	11, 335
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	3 cut(s)	424, 425, 507
BmiI	GGNNCC	4 cut(s)	426, 427, 509, 529
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 650
Bse1I	ACTGG	2 cut(s)	447, 529
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	307, 439
BseLI	CCNNNNNNNGG	2 cut(s)	568, 650
BseMII	CTCAG	2 cut(s)	5, 384
BseNI	ACTGG	2 cut(s)	447, 529
BseRI	GAGGAG	2 cut(s)	92, 100
BseSI	GKGCMC	1 cut(s)	428
BshFI	GGCC	4 cut(s)	12, 99, 363, 426
BslFI	GGGAC	2 cut(s)	493, 667
BslI	CCNNNNNNNGG	2 cut(s)	568, 650
BsmAI	GTCTC	2 cut(s)	59, 221
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	493, 667
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	12, 99, 363, 426
Bsp120I	GGGCCC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	3 cut(s)	27, 435, 490
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	3 cut(s)	9, 112, 333
BspANI	GGCC	4 cut(s)	12, 99, 363, 426
BspCNI	CTCAG	2 cut(s)	6, 385
BspLI	GGNNCC	4 cut(s)	426, 427, 509, 529
BspMI	ACCTGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	430, 485
BsrI	ACTGG	2 cut(s)	447, 529
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	27, 435, 490
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	4 cut(s)	266, 298, 358, 457
BstC8I	GCNNGC	3 cut(s)	73, 77, 116
BstDEI	CTNAG	3 cut(s)	14, 393, 611
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	307, 439
BstKTI	GATC	3 cut(s)	30, 438, 493
BstMAI	GTCTC	2 cut(s)	59, 221
BstMBI	GATC	3 cut(s)	27, 435, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 324, 333
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	4 cut(s)	12, 99, 363, 426
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	307, 439
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	5 cut(s)	150, 278, 294, 295, 522
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	73, 77, 116
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	3 cut(s)	424, 425, 507
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	3 cut(s)	315, 329, 650
CviJI	RGCY	9 cut(s)	12, 75, 99, 118, 336, 363, 426, 480, 643
CviKI_1	RGCY	9 cut(s)	12, 75, 99, 118, 336, 363, 426, 480, 643
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	14, 393, 611
DpnI	GATC	3 cut(s)	29, 437, 492
DpnII	GATC	3 cut(s)	27, 435, 490
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	507
EcoO109I	RGGNCCY	3 cut(s)	424, 425, 507
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	3 cut(s)	318, 332, 653
FaqI	GGGAC	2 cut(s)	493, 667
FatI	CATG	3 cut(s)	314, 328, 649
Fnu4HI	GCNGC	2 cut(s)	10, 334
FokI	GGATG	2 cut(s)	314, 426
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	2 cut(s)	10, 334
FspBI	CTAG	3 cut(s)	200, 252, 585
GluI	GCNGC	2 cut(s)	10, 334
HaeIII	GGCC	4 cut(s)	12, 99, 363, 426
Hin1II	CATG	3 cut(s)	318, 332, 653
HinfI	GANTC	4 cut(s)	389, 410, 554, 581
HphI	GGTGA	1 cut(s)	419
Hpy188I	TCNGA	6 cut(s)	64, 388, 394, 415, 435, 490
Hpy188III	TCNNGA	3 cut(s)	106, 200, 209
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	4 cut(s)	266, 298, 358, 457
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	143, 161, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 324, 333
HpyF3I	CTNAG	3 cut(s)	14, 393, 611
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	318, 332, 653
Kzo9I	GATC	3 cut(s)	27, 435, 490
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	3 cut(s)	200, 252, 585
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	292, 555
MalI	GATC	3 cut(s)	29, 437, 492
MboI	GATC	3 cut(s)	27, 435, 490
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	4 cut(s)	170, 309, 574, 685
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	7 cut(s)	78, 110, 113, 229, 330, 466, 654
MseI	TTAA	1 cut(s)	688
MspR9I	CCNGG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	3 cut(s)	120, 324, 333
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	3 cut(s)	27, 435, 490
NlaIII	CATG	3 cut(s)	318, 332, 653
NlaIV	GGNNCC	4 cut(s)	426, 427, 509, 529
NmuCI	GTSAC	2 cut(s)	292, 555
NspI	RCATGY	1 cut(s)	318
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	389, 410, 581
PkrI	GCNGC	2 cut(s)	11, 335
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	4 cut(s)	426, 427, 509, 529
PspOMI	GGGCCC	1 cut(s)	424
PspPI	GGNCC	3 cut(s)	424, 425, 507
PspPPI	RGGWCCY	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	585, 617
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	688
SatI	GCNGC	2 cut(s)	10, 334
Sau3AI	GATC	3 cut(s)	27, 435, 490
Sau96I	GGNCC	3 cut(s)	424, 425, 507
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	3 cut(s)	134, 260, 509
SfaNI	GCATC	1 cut(s)	610
SinI	GGWCC	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	170, 309, 574, 685
SsiI	CCGC	3 cut(s)	9, 112, 333
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	200, 252, 585
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	266, 298, 358, 457
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	306, 552
TasI	AATT	4 cut(s)	170, 309, 574, 685
TauI	GCSGC	2 cut(s)	12, 336
TfiI	GAWTC	3 cut(s)	389, 410, 581
Tru1I	TTAA	1 cut(s)	688
Tru9I	TTAA	1 cut(s)	688
TscAI	CASTG	5 cut(s)	150, 278, 295, 301, 529
TseFI	GTSAC	2 cut(s)	292, 555
Tsp45I	GTSAC	2 cut(s)	292, 555
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	5 cut(s)	150, 278, 295, 301, 529
VpaK11BI	GGWCC	1 cut(s)	507
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XspI	CTAG	3 cut(s)	200, 252, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.