Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

35167302 .. 35170064

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGATAGCGGCTTGAGTGAGAGTTTGATCGGGGTGGCACCACCACCACCACCACTATCGTCGGAGACGGCAAGCCAGCGATGGAGGAGATTGTGTGGCCTCCTCAAGAACCGCAAGCCAAGCAAGATAACGTTCCCCGTTGCAGTGCTGATGAGATATGCACAATACCAATTTATCAACGGAATAGACAATCTAGATCTAGATAGTCAGGACGAGGAACAGACAGAGACAACAGAGGAAGCAAATGTTCCTAGCAGGTTTTACTGTTATCAGTGTCGTCAAGTGGTCAGTGTCACTGTGGATGTCGAAATTGCATGCCCTCTCTGCCATAGCGGCTGGATACAAGAATGTAGTACCGTTGGCCTACTCTATCTTACTATGCCATCAGAATCTGAGCATTCTGCTGGTGATTCTGATGGTCAGGGCCCCATTCTGATCCATCCTTCCAGTCCAACTGTCATAGACATTGTCGAGGACAGCTATGGCTCAGATCCCAACCCCAACAGGTCCCCTTTTCATAGCACTGGTTCCTATGATTACAACAACTATGTCGAGTCACACCAGACAACGGGCAATTATGATTCTAGTTTGGAACAGGGATTACTTACACTTAGCATTGATGCAAATATTGTTCCTAACCAGCCTCATCATGGGACAGGGGTTACTACTACATCAGTCTGGATCTTTTCAGCCACTGGTTTCACCTTTGAGGCTTTATCGGCATTTTTCGATCAGGTTTCCACCCCACAGAAGCCTCAATATTCATTGTATGGCATGCTGTTGTCCATCGTGGCTGTACCTGTTTGCATCCTGGACCTGATTCACAATGCCCTGATACAAAGACAAAGAGGACTCACATCTGCGAGTAACATTCTTTGGGGTATCTTGCCCGAAATTTTTGGTTTACCTCTCGCATGTATTCAATGCATTAGCTCGGCACTGCAGTTTTTATTTCTCTGTAGGCATGCTGCTAATCCTATGAAAATATCGCTAGCGCCTTTCTTATTTTTCTTAGTTTTGTTTGCTTTCAAATATAGAGAAGGAAGGAATGGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.75

Weight (kDa)

4.96

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	85 - 116	6.7e-06	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	3 cut(s)	9, 112, 333
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	3 cut(s)	430, 485, 689
AcsI	RAATTY	1 cut(s)	894
AfaI	GTAC	2 cut(s)	355, 798
AfiI	CCNNNNNNNGG	2 cut(s)	568, 650
AgsI	TTSAA	2 cut(s)	923, 1030
AjnI	CCWGG	1 cut(s)	810
AluBI	AGCT	2 cut(s)	480, 933
AluI	AGCT	2 cut(s)	480, 933
Alw26I	GTCTC	2 cut(s)	59, 221
AlwI	GGATC	3 cut(s)	430, 485, 689
AlwNI	CAGNNNCTG	2 cut(s)	392, 695
AoxI	GGCC	3 cut(s)	97, 361, 424
ApaI	GGGCCC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	968
ApoI	RAATTY	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	997
AspS9I	GGNCC	4 cut(s)	424, 425, 507, 814
AsuHPI	GGTGA	2 cut(s)	419, 694
AsuNHI	GCTAGC	1 cut(s)	991
AvaII	GGWCC	2 cut(s)	507, 814
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	955
BccI	CCATC	5 cut(s)	75, 391, 410, 447, 794
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	812
BciVI	GTATCC	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	59, 221
BfaI	CTAG	5 cut(s)	194, 200, 252, 585, 992
BfmI	CTRYAG	2 cut(s)	941, 958
BfoI	RGCGCY	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	10, 334, 969
BlsI	GCNGC	3 cut(s)	11, 335, 970
Bme1390I	CCNGG	1 cut(s)	812
Bme18I	GGWCC	2 cut(s)	507, 814
BmgT120I	GGNCC	4 cut(s)	424, 425, 507, 814
BmiI	GGNNCC	5 cut(s)	39, 426, 427, 509, 529
BmrFI	CCNGG	1 cut(s)	812
BmsI	GCATC	2 cut(s)	610, 816
BmtI	GCTAGC	1 cut(s)	995
BpuEI	CTTGAG	2 cut(s)	34, 89
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 650
Bse1I	ACTGG	3 cut(s)	447, 529, 700
BseBI	CCWGG	1 cut(s)	812
BseGI	GGATG	3 cut(s)	307, 439, 807
BseLI	CCNNNNNNNGG	2 cut(s)	568, 650
BseMII	CTCAG	2 cut(s)	384, 501
BseNI	ACTGG	3 cut(s)	447, 529, 700
BseRI	GAGGAG	2 cut(s)	92, 100
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	955
BshFI	GGCC	3 cut(s)	99, 363, 426
BshNI	GGYRCC	1 cut(s)	37
BslFI	GGGAC	2 cut(s)	493, 667
BslI	CCNNNNNNNGG	2 cut(s)	568, 650
BsmAI	GTCTC	2 cut(s)	59, 221
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	493, 667
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	99, 363, 426
Bsp120I	GGGCCC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
BspACI	CCGC	3 cut(s)	9, 112, 333
BspANI	GGCC	3 cut(s)	99, 363, 426
BspCNI	CTCAG	2 cut(s)	385, 500
BspLI	GGNNCC	5 cut(s)	39, 426, 427, 509, 529
BspMAI	CTGCAG	1 cut(s)	945
BspMI	ACCTGC	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	995
BspPI	GGATC	3 cut(s)	430, 485, 689
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	447, 529, 700
BssMI	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	4 cut(s)	266, 298, 358, 457
BstC8I	GCNNGC	7 cut(s)	73, 77, 116, 316, 776, 966, 993
BstDEI	CTNAG	4 cut(s)	393, 487, 611, 1012
BstF5I	GGATG	3 cut(s)	307, 439, 807
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	1 cut(s)	997
BstKTI	GATC	6 cut(s)	30, 199, 438, 493, 684, 733
BstMAI	GTCTC	2 cut(s)	59, 221
BstMBI	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 324, 333, 719
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	4 cut(s)	318, 778, 918, 968
BstSCI	CCNGG	1 cut(s)	810
BstSFI	CTRYAG	2 cut(s)	941, 958
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	955
BstX2I	RGATCY	3 cut(s)	196, 490, 681
BstYI	RGATCY	3 cut(s)	196, 490, 681
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	99, 363, 426
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	307, 439, 807
BtsI	GCAGTG	2 cut(s)	150, 938
BtsIMutI	CAGTG	7 cut(s)	150, 278, 294, 295, 522, 693, 938
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	7 cut(s)	73, 77, 116, 316, 776, 966, 993
CaiI	CAGNNNCTG	2 cut(s)	392, 695
CfoI	GCGC	1 cut(s)	997
Cfr13I	GGNCC	4 cut(s)	424, 425, 507, 814
Csp6I	GTAC	2 cut(s)	354, 797
CviAII	CATG	5 cut(s)	315, 650, 775, 915, 965
CviQI	GTAC	2 cut(s)	354, 797
DdeI	CTNAG	4 cut(s)	393, 487, 611, 1012
DpnI	GATC	6 cut(s)	29, 198, 437, 492, 683, 732
DpnII	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
Eco24I	GRGCYC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	507, 814
EcoO109I	RGGNCCY	3 cut(s)	424, 425, 507
EcoRII	CCWGG	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	929
EcoT38I	GRGCYC	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	5 cut(s)	318, 653, 778, 918, 968
FaqI	GGGAC	2 cut(s)	493, 667
FatI	CATG	5 cut(s)	314, 649, 774, 914, 964
Fnu4HI	GCNGC	3 cut(s)	10, 334, 969
FokI	GGATG	3 cut(s)	314, 426, 794
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	10, 334, 969
FspBI	CTAG	5 cut(s)	194, 200, 252, 585, 992
GlaI	GCGC	1 cut(s)	996
GluI	GCNGC	3 cut(s)	10, 334, 969
HaeII	RGCGCY	1 cut(s)	998
HaeIII	GGCC	3 cut(s)	99, 363, 426
HhaI	GCGC	1 cut(s)	997
Hin1II	CATG	5 cut(s)	318, 653, 778, 918, 968
Hin6I	GCGC	1 cut(s)	995
HinP1I	GCGC	1 cut(s)	995
HinfI	GANTC	6 cut(s)	389, 410, 554, 581, 820, 852
HphI	GGTGA	2 cut(s)	419, 694
Hpy166II	GTNNAC	1 cut(s)	905
Hpy188I	TCNGA	6 cut(s)	64, 388, 394, 415, 435, 490
Hpy188III	TCNNGA	5 cut(s)	106, 194, 200, 209, 679
Hpy8I	GTNNAC	1 cut(s)	905
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	453, 1034, 1038
HpyCH4III	ACNGT	4 cut(s)	266, 298, 358, 457
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	7 cut(s)	143, 161, 314, 623, 807, 927, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 324, 333, 719
HpyF3I	CTNAG	4 cut(s)	393, 487, 611, 1012
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	318, 653, 778, 918, 968
HspAI	GCGC	1 cut(s)	995
Kzo9I	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
Lsp1109I	GCAGC	1 cut(s)	955
LweI	GCATC	2 cut(s)	610, 816
MaeI	CTAG	5 cut(s)	194, 200, 252, 585, 992
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	4 cut(s)	292, 555, 661, 866
MalI	GATC	6 cut(s)	29, 198, 437, 492, 683, 732
MboI	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
MflI	RGATCY	3 cut(s)	196, 490, 681
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	4 cut(s)	170, 309, 574, 894
MlyI	GAGTC	2 cut(s)	563, 846
MmeI	TCCRAC	2 cut(s)	42, 476
Mph1103I	ATGCAT	1 cut(s)	929
MspR9I	CCNGG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	4 cut(s)	120, 324, 333, 719
NdeII	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
NheI	GCTAGC	1 cut(s)	991
NlaIII	CATG	5 cut(s)	318, 653, 778, 918, 968
NlaIV	GGNNCC	5 cut(s)	39, 426, 427, 509, 529
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	2 cut(s)	292, 555
NsiI	ATGCAT	1 cut(s)	929
NspI	RCATGY	4 cut(s)	318, 778, 918, 968
PaeI	GCATGC	3 cut(s)	318, 778, 968
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	389, 410, 581, 820
PflFI	GACNNNGTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	3 cut(s)	11, 335, 970
PleI	GAGTC	2 cut(s)	562, 846
PpsI	GAGTC	2 cut(s)	562, 846
PpuMI	RGGWCCY	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	5 cut(s)	39, 426, 427, 509, 529
PspOMI	GGGCCC	1 cut(s)	424
PspPI	GGNCC	4 cut(s)	424, 425, 507, 814
PspPPI	RGGWCCY	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	585, 617
PstI	CTGCAG	1 cut(s)	945
PstNI	CAGNNNCTG	2 cut(s)	392, 695
PsuI	RGATCY	3 cut(s)	196, 490, 681
PsyI	GACNNNGTC	1 cut(s)	467
RsaI	GTAC	2 cut(s)	355, 798
RsaNI	GTAC	2 cut(s)	354, 797
SatI	GCNGC	3 cut(s)	10, 334, 969
Sau3AI	GATC	6 cut(s)	27, 196, 435, 490, 681, 730
Sau96I	GGNCC	4 cut(s)	424, 425, 507, 814
SchI	GAGTC	2 cut(s)	563, 846
ScrFI	CCNGG	1 cut(s)	812
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	610, 816
SfcI	CTRYAG	2 cut(s)	941, 958
SinI	GGWCC	2 cut(s)	507, 814
SmlI	CTYRAG	2 cut(s)	13, 104
SmoI	CTYRAG	2 cut(s)	13, 104
SphI	GCATGC	3 cut(s)	318, 778, 968
Sse9I	AATT	4 cut(s)	170, 309, 574, 894
SsiI	CCGC	3 cut(s)	9, 112, 333
SspI	AATATT	2 cut(s)	628, 761
SspMI	CTAG	5 cut(s)	194, 200, 252, 585, 992
StyD4I	CCNGG	1 cut(s)	810
TaaI	ACNGT	4 cut(s)	266, 298, 358, 457
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	306, 471, 552, 729
TasI	AATT	4 cut(s)	170, 309, 574, 894
TauI	GCSGC	2 cut(s)	12, 336
TfiI	GAWTC	4 cut(s)	389, 410, 581, 820
TscAI	CASTG	7 cut(s)	150, 278, 295, 301, 529, 700, 945
TseFI	GTSAC	2 cut(s)	292, 555
TseI	GCWGC	1 cut(s)	968
Tsp45I	GTSAC	2 cut(s)	292, 555
TspDTI	ATGAA	3 cut(s)	506, 753, 995
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	7 cut(s)	150, 278, 295, 301, 529, 700, 945
Tth111I	GACNNNGTC	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	507, 814
XapI	RAATTY	1 cut(s)	894
XbaI	TCTAGA	2 cut(s)	193, 199
XceI	RCATGY	4 cut(s)	318, 778, 918, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XspI	CTAG	5 cut(s)	194, 200, 252, 585, 992
Zsp2I	ATGCAT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.