Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001204.1

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

52132 .. 55626

Gene Structure 3495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001204.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggggcatgggacacggatcatgaggcatgcgagcgagttggataaagaggatgaggtactgtccttgggggcactggcacatgtcctttatttggagggacttgaattgttccgcaccgtccactttgcaatcttgaccttatatgctgcatggcaatttaagaaaggattagatggtttaaatctagacagtcaggacaaggaacagacagagacaacagaggaagcgaataatgttggcagcaggtattactgtcagcagtgtgatcaactggtcaccgtccctttggatgtcaatatggcataccctctttgccaaggctgttttatgggaaaacatggttgtgtcagctcgttgcaccctcacatgctgtcggagtcagagccttctgcaagtgacgctgataggaatgaacccatggtaatccctccttccaatccaacagtcccggatattgtcaacaacaacaatggttcagcactaaacagattgctttctcatagccttggttcccatgattacagcaactatggcggcacacaccaggcgccggcacatgatgattccaaccctagtcggtcatttttacgaacagatggctctgatcatgctgtcaccagcaatagcgtgccaggccatgcagtcccttatgtttcaagttccaatagtgggtcgcatccacgtaaccttgttgcgaatgttggcactgaccagccacatcatgggacaagggttacttcatcggtctggatcttttcagccattggtttcggatttgaggctgtttcggcattttttgatcaagtttccaccccacagaagcctcactatgcattatatggcatgctgttgtctttcgtggctgtactggtttgcatattggacctcattctcaatgccaggaaacaaagcacacctgagaataacatactttggaatatcttacctgaagtttttggattagctctcgcctgtgttcagttcagtagctcggcactgcagttttcatttctctgcaggcacgctgctaatcctgtgaaagtatccgttgtgcctttcttatttttcttcgtcttgtttgctttcaaatgtagaaatggaaggaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

40.53

Weight (kDa)

5.94

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	725
AciI	CCGC	2 cut(s)	115, 537
AclWI	GGATC	2 cut(s)	26, 761
AcuI	CTGAAG	1 cut(s)	972
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	2 cut(s)	60, 870
AfiI	CCNNNNNNNGG	4 cut(s)	94, 553, 672, 725
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	107, 660, 1090
AjnI	CCWGG	3 cut(s)	546, 634, 902
AluBI	AGCT	3 cut(s)	354, 968, 993
AluI	AGCT	3 cut(s)	354, 968, 993
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	26, 761
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	149, 243, 1028
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	886
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	271, 610
AvaII	GGWCC	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	136, 255, 1015
BccI	CCATC	2 cut(s)	170, 593
BciT130I	CCWGG	3 cut(s)	548, 636, 904
BciVI	GTATCC	1 cut(s)	1057
BclI	TGATCA	3 cut(s)	268, 607, 802
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	188, 576
BfmI	CTRYAG	2 cut(s)	1001, 1018
BfoI	RGCGCY	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	1057
BisI	GCNGC	4 cut(s)	150, 244, 538, 1029
BlsI	GCNGC	4 cut(s)	151, 245, 539, 1030
Bme1390I	CCNGG	4 cut(s)	452, 548, 636, 904
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	1 cut(s)	886
BmiI	GGNNCC	2 cut(s)	514, 552
BmrFI	CCNGG	4 cut(s)	452, 548, 636, 904
BmsI	GCATC	1 cut(s)	688
BpuMI	CCSGG	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	4 cut(s)	66, 319, 420, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 553, 672, 725
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	81, 279, 876
BseBI	CCWGG	3 cut(s)	548, 636, 904
BseDI	CCNNGG	4 cut(s)	66, 319, 420, 508
BseGI	GGATG	3 cut(s)	58, 298, 679
BseLI	CCNNNNNNNGG	4 cut(s)	94, 553, 672, 725
BseMII	CTCAG	1 cut(s)	912
BseNI	ACTGG	3 cut(s)	81, 279, 876
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	136, 255, 1015
BshFI	GGCC	1 cut(s)	639
BshNI	GGYRCC	1 cut(s)	550
BsiSI	CCGG	2 cut(s)	452, 554
BslFI	GGGAC	6 cut(s)	25, 114, 269, 434, 632, 742
BslI	CCNNNNNNNGG	4 cut(s)	94, 553, 672, 725
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	6 cut(s)	25, 114, 269, 434, 632, 742
BsnI	GGCC	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	5 cut(s)	18, 268, 607, 753, 802
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	2 cut(s)	115, 537
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	514, 552
BspMAI	CTGCAG	2 cut(s)	1005, 1022
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	26, 761
BspT107I	GGYRCC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	81, 279, 876
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	4 cut(s)	66, 319, 420, 508
BssMI	GATC	5 cut(s)	18, 268, 607, 753, 802
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	4 cut(s)	66, 319, 420, 508
Bst2UI	CCWGG	3 cut(s)	548, 636, 904
Bst4CI	ACNGT	6 cut(s)	63, 121, 194, 257, 283, 448
BstACI	GRCGYC	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	7 cut(s)	30, 34, 555, 632, 848, 1022, 1026
BstDEI	CTNAG	1 cut(s)	921
BstDSI	CCRYGG	1 cut(s)	420
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	58, 298, 679
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	5 cut(s)	21, 271, 610, 756, 805
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	18, 268, 607, 753, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 534, 636, 791
BstNI	CCWGG	3 cut(s)	548, 636, 904
BstNSI	RCATGY	4 cut(s)	32, 86, 373, 850
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	4 cut(s)	450, 546, 634, 902
BstSFI	CTRYAG	2 cut(s)	1001, 1018
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	136, 255, 1015
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
BsuI	GTATCC	1 cut(s)	1057
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	3 cut(s)	58, 298, 679
BtsI	GCAGTG	2 cut(s)	269, 998
BtsIMutI	CAGTG	4 cut(s)	74, 269, 708, 998
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	7 cut(s)	30, 34, 555, 632, 848, 1022, 1026
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	886
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	59, 869
CviQI	GTAC	2 cut(s)	59, 869
DdeI	CTNAG	1 cut(s)	921
DinI	GGCGCC	1 cut(s)	552
DpnI	GATC	5 cut(s)	20, 270, 609, 755, 804
DpnII	GATC	5 cut(s)	18, 268, 607, 753, 802
DraI	TTTAAA	1 cut(s)	183
Eco130I	CCWWGG	4 cut(s)	66, 319, 420, 508
Eco47I	GGWCC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	972
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	546, 634, 902
EcoT14I	CCWWGG	4 cut(s)	66, 319, 420, 508
EcoT22I	ATGCAT	1 cut(s)	838
EgeI	GGCGCC	1 cut(s)	552
EheI	GGCGCC	1 cut(s)	552
ErhI	CCWWGG	4 cut(s)	66, 319, 420, 508
FalI	AAGNNNNNCTT	2 cut(s)	724, 756
FaqI	GGGAC	6 cut(s)	25, 114, 269, 434, 632, 742
FbaI	TGATCA	3 cut(s)	268, 607, 802
Fnu4HI	GCNGC	4 cut(s)	150, 244, 538, 1029
FokI	GGATG	3 cut(s)	65, 305, 666
Fsp4HI	GCNGC	4 cut(s)	150, 244, 538, 1029
FspBI	CTAG	2 cut(s)	188, 576
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	4 cut(s)	150, 244, 538, 1029
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	452, 554
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	553
Hin1I	GRCGYC	1 cut(s)	551
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	380, 566
HpaII	CCGG	2 cut(s)	452, 554
HphI	GGTGA	2 cut(s)	271, 610
Hpy166II	GTNNAC	2 cut(s)	124, 463
Hpy188I	TCNGA	4 cut(s)	379, 385, 607, 776
Hpy188III	TCNNGA	5 cut(s)	22, 136, 188, 197, 751
Hpy8I	GTNNAC	2 cut(s)	124, 463
HpyAV	CCTTC	3 cut(s)	399, 444, 1098
HpyCH4III	ACNGT	6 cut(s)	63, 121, 194, 257, 283, 448
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	9 cut(s)	131, 152, 361, 395, 644, 836, 879, 1003, 1020
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 534, 636, 791
HpyF3I	CTNAG	1 cut(s)	921
HpySE526I	ACGT	1 cut(s)	685
Hsp92I	GRCGYC	1 cut(s)	551
HspAI	GCGC	1 cut(s)	551
KasI	GGCGCC	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
Ksp22I	TGATCA	3 cut(s)	268, 607, 802
Kzo9I	GATC	5 cut(s)	18, 268, 607, 753, 802
Lsp1109I	GCAGC	3 cut(s)	136, 255, 1015
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	2 cut(s)	188, 576
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	5 cut(s)	277, 398, 616, 686, 736
MalI	GATC	5 cut(s)	20, 270, 609, 755, 804
MboI	GATC	5 cut(s)	18, 268, 607, 753, 802
MboII	GAAGA	1 cut(s)	1063
MflI	RGATCY	1 cut(s)	753
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	107, 158, 1108
Mly113I	GGCGCC	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	4 cut(s)	21, 357, 467, 594
Mph1103I	ATGCAT	1 cut(s)	838
MroNI	GCCGGC	1 cut(s)	553
MseI	TTAA	2 cut(s)	162, 182
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	2 cut(s)	452, 554
MspR9I	CCNGG	4 cut(s)	452, 548, 636, 904
MvaI	CCWGG	3 cut(s)	548, 636, 904
MwoI	GCNNNNNNNGC	4 cut(s)	401, 534, 636, 791
NaeI	GCCGGC	1 cut(s)	555
NarI	GGCGCC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	5 cut(s)	18, 268, 607, 753, 802
NgoMIV	GCCGGC	1 cut(s)	553
NlaIV	GGNNCC	2 cut(s)	514, 552
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	3 cut(s)	277, 398, 616
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	4 cut(s)	32, 86, 373, 850
PaeI	GCATGC	2 cut(s)	32, 850
PagI	TCATGA	1 cut(s)	21
PciI	ACATGT	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	725
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	151, 245, 539, 1030
PleI	GAGTC	1 cut(s)	388
PluTI	GGCGCC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	686
PscI	ACATGT	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	546, 634, 902
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	3 cut(s)	546, 634, 902
PspN4I	GGNNCC	2 cut(s)	514, 552
PspPI	GGNCC	1 cut(s)	886
PstI	CTGCAG	2 cut(s)	1005, 1022
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	2 cut(s)	60, 870
RsaNI	GTAC	2 cut(s)	59, 869
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	162, 182
SatI	GCNGC	4 cut(s)	150, 244, 538, 1029
Sau3AI	GATC	5 cut(s)	18, 268, 607, 753, 802
Sau96I	GGNCC	1 cut(s)	886
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	452, 548, 636, 904
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	2 cut(s)	1001, 1018
SfoI	GGCGCC	1 cut(s)	552
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	1 cut(s)	345
SphI	GCATGC	2 cut(s)	32, 850
Sse9I	AATT	3 cut(s)	107, 158, 1108
SsiI	CCGC	2 cut(s)	115, 537
SspDI	GGCGCC	1 cut(s)	550
SspMI	CTAG	2 cut(s)	188, 576
StyD4I	CCNGG	4 cut(s)	450, 546, 634, 902
StyI	CCWWGG	4 cut(s)	66, 319, 420, 508
TaaI	ACNGT	6 cut(s)	63, 121, 194, 257, 283, 448
TaiI	ACGT	1 cut(s)	688
TaqII	GACCGA	2 cut(s)	570, 736
TasI	AATT	3 cut(s)	107, 158, 1108
TatI	WGTACW	1 cut(s)	868
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	162, 182
Tru9I	TTAA	2 cut(s)	162, 182
TscAI	CASTG	4 cut(s)	81, 269, 715, 1005
TseFI	GTSAC	3 cut(s)	277, 398, 616
TseI	GCWGC	3 cut(s)	149, 243, 1028
Tsp45I	GTSAC	3 cut(s)	277, 398, 616
TspDTI	ATGAA	3 cut(s)	429, 732, 999
TspGWI	ACGGA	2 cut(s)	31, 1039
TspRI	CASTG	4 cut(s)	81, 269, 715, 1005
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	886
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	4 cut(s)	32, 86, 373, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XspI	CTAG	2 cut(s)	188, 576
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.